RNA id: XM_036979574.1


Basic Information

Item Value
RNA id XM_036979574.1
length 4338
RNA type mRNA
GC content 0.47
exon number 26
gene id LOC110524569
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51358288 ~ 51424303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAgctggagagagaacgagagagcgagggaaagagagagagagagctctgtttAATAGCAGTAGTCAGCGGTGGCGCTCGCCTAGTGATGGGAAGATGGCAGAAGAAACACCAGAGAGCTCAGGGACTTCACTGCTTCATAACTCAGCAGACACATCTAGCAAGCCCAGGCACTTCTTAAAGGATGTGGTTTTTCATGGCAAATTTCAAcTCCTGAACTCCCTGACACCCGAGGAGAACACCCAATGCCAGCACGGCCTATACTTCCAGGATGGAGAGAGGCGTGTGGACTACATCCTCACCTACCACATCAAAAAGCCCAGCAGCTCCCGCTCTAACAGACAGTCCTCCCGCTTCACCGACAATGCCTTCACACGGAGCCTCCGCCGCGGGACGGCCAGGCTGGGACGACCCCCGCCCCCGCAGCCCAGAGGTGACCCGGAGGTGGCCTCTCAGGACCACAGCATGGACTACCACGAGGACGACAAGCGCTACCGCCGGGAAGAGTTTGAGGGCAACCTGAGGGATATGGGCCTGGAGCTGGAGAAGGATGAGGATACTAAAACTCCAGGTGTGGGTTTTGTGAAGATCCACGCTCCATGGCATGTGCTCTGTCGAGAGGCAGAGTTTATGAAGCTCAAGATGCCCACGAAAAAAGTATATGAAGTGAAGCAGTGCAGTGGTGTTGGGGCGAAGATCAACACATTGGTAAACAAAGCCACTGAACCACTTCACCCCAACGTGGAAGAGAACAGGGGACAACACGTTAAGCATCTCTCCTACGCATTTTCCAGAGAAAAACAACACTTGTTTGATTTATCAGACAGAGACTCCTTCTTTGACAGTAAAACAAGAGCTTCAATAGTTTTTGAAGTATTGAAACGTACAAAATGCACAAAGGCTAAGTATAGTATGGGGATCACCAGCCTGCTAGGTAGTGGAGTCTACACAGCTGCCTATCCGCTACATGATGGAGATGTGGATGGTGAAAACGTGGAGCCCAATGATAGGAAGCTCTTGTATGAGGAGTGGGCGAGTTACAGTGTATTTTACAAATACCAGCCTATCGGGCTAGTGAGGAAGTACTTTGGGGAGAAGATAGGGCTGTACTTTGCTTGGCTGGGGCTGTACACCCAGATGCTGATCCCTGCTTCTCTAGTGGGAGTCATCGTGTTCCTGTACGGCTGTGCCACTGTAGACAACAACATTCCCAGCATGGAGATCTGCCACCCCAGGAACAACATCACCATGTGCCCGCTGTGTGACAGAGCCTGTAACTACTGGAAACTGAAGGAAGCCTGCGGGACAGCCCGGGCCAGCCACCTTTTTGACAACCCTGCCACCGTCTTCTTCTCCATCTTCATGGCCCTCTGGGCTGCCATGTTCATGGAGCACTGGAAGAGAAGACAGATGCGTCTCAACTACGAATGGGATCTGACCGGCttcgaggaggaggagGAAGAGCTGAAGGACCACCCGAGAGCTGAGTACGAGCTCTGCGTTATGCAGAAGTCCCTGAAGAAAGAACACAAGACGCAGAAGCCTACAGAGATAGCAGAAGAACCAACAAACAAATGGAAGCAAACGGTTCAATCTGCCATGGCTGGGCTTAAACTGACTGAAAAAGAAAAGCTGACCTGCAGAGACCGGTTACCGGCATACATGACCAACATAGTCATGATGCTTCTGATGATCGGGGTGACCTTTGCTATAGTGTTCGGGGTCATCCTCTACCGGATCTCCATCACGGCAGCGCTGCACATGAGCAACAACCCCACGACGCGATCCAACGTCCGTCTGATGGTAAAAACAACGGCCGCAATCATCAACCTGGTGGTCATTCTGATCCTGGACGAGGTCTACGGAGCCGTGGCCCGCTGGCTCACTGTCCTCGAGGTCCCAAAGACAGACAGGAGCTTTGAGGAGAGGTTGATATTCAAGACGTTCGTCCTAAAGTTTGTGAATGCCTTTACTCCCATCATATACATAGCATTCTTCAGAGGCAGGCTTGTTGGACGACCTGGAAGTTATCTGTATGTGTTTGAGTCGTACCGCATGGAAGAGTGTGCTCATGGAGGATGTCTGATGGAGTTGTGTATTCAGCTCAGTATCACCATGTTGGGAAAGCAACTCATCCAGAACAATTTATTTGAAATCGGTATCCCGAAGCTGAAGAAGTTGATCAGGTACATCAAGTCTAAGAGAAGGTCCTtccaggaagaggagagggagaagaagttaCAGCGCTATGAGACGGACCACTTCCTAGAGCCCTTCGCAGGCCTCACTCCAGAGTACATGGAGATGATAATCCAGTTTGGGTTTGTGACCTTGTTCGTGGCGTCGTTTCCGCTGGCCCCACTGTTCGCCCTGCTCAACAACATCATCGAGATACGCCTGGATGCCAAGAAGTTTGTGGCTGAGCTCAGGAGGCCGGTCGCTGCGAGGGCAAAAGACATTGGTATATGGTACAACCTTCTCCGAGGTGTGGCTAAAGTGGCCGTCATCATAAACGCGTTTGTGATCTCCTTCACGTCAGACTTCATCCCGAGGCTAGTCTACCAGTACATGTACAGCCCAGATGGCTCCATGCACGGCTTTGTCAACCACACCATGTCCTATTTTAACGTCTCAGACTTCCAGGATGGTAAAGAACCTATGGATCCTCATCATCTGGGTTACCAGGTGGAGATGTGTAGGTATAAGGACTACAGGGAGCCTCCATGGTCCAACACGCCCTATGTGGTCTCTAAAGAGTTCTGGGCGGTCCTGGCCGCCCGACTGGCCTTCGTCATAGTCTTTCAGAACGTGGTGATGCTGATGAGTGACATCGTGGACTGGTTGATCCCAGACATCCCTAAAGACATCAGCCTTCAGATCCACAAGGAGAAGATCCTGATGGTGGAGCTGTTCATGAAGGAGGAGCAGGGCAAGATGCAGTTCATAGACAGCATGACTCCTTGTGACGGCAAGGGGCGCAACAACCACGCCCCTATAGCCCGCTCGCGctccatcccacacacacacagtcacacgcaCGCCAACAACTTCTAGCAGCTCCTATAAGGTCTAGCCTTGCTAGCTAAGCCAAGGGTTACTACTCTCTGTGTCTTTATCCATGTCCAGACATTCCGTAGAAAGGGAGAAGTGTTCCCTTCAAGACGTTGTCGGAGGCCGAACTACGAGAAACAGAAACAGTCCCCGTGCACAATGCCTTCCTGTCAAACCATTCAGTGaataactaactagctaactgCCAACCAGATAACGAACTGCCAGCCAGTGGGGTCATGGTTTTGAGGGATGATCTTAAATGTGGCGGACCATACCATATTCAGAGCagccagagaagagagaaaatgtTTGTTTAAAATGTTCTTTACGTGCTTTACGTTACAGCATATCTTGCATCTGAGGTATTTCGATGTTTGCCTCTTTATAAACAGGATGTAGATTATACATAATCCTTTTACTCTTACGACTCAACCATATCCATGGTGCAACCGTGCGAATAACCACTCTCATAAACGCTAAACTTTGTATTCAATTCTTACACAACATTAATGAACAATTATTTTCTTTacctagatttttttttatttgtatttttaactATAAAAAAAACTAACTTGGATATCTTGAAATGTATGTGTGTAGAGCAAAGGATATCATCTTAAATGGGTGACAGGTTTTTGTATGTCTTTGATTCAAAGATCTCAAATGTTTTTAGCTACCAAGCACACAGTTGAGCATGGTTGATACATCACCTGGTTGTGGGCTCCCATGCTATCATATAGCAAAAGCTGTTAGTAGAGTATTTTATTGCGTTACAGTATTCAAGTAAAATAGCAATGTATGATGACTAGAATGCTGCTAAACATAGTAAAATACGTTAAATCACTTTAGTTCAGAATATATACGACTTAGCAGTGTTGTAAGAATATACCCCTGTTGTAACATGTACAGTTCAGGCAAACCTTTCTCTGCCACAAGACATACATTATACTATGTGACTTCTACGCTTCAAAGCCAATCAGGATATTCTCTTACATGTGGAGCAATAATAATGAAACCTTTCAGTTGTACTTAAAATTGTATATTGTTTACACTTACTTCTGTCTACTGGATATACTAAGAAATATAATATTTCTCATTCTTTACTTGCCTTTCTTCAGAGGACAAGGACACTTTGATCCTTTTATATGTCAAACTAATGTCTTCATACAAAATGAGAGTGATTTCATAGCAGCATATTTTACTGTATTGATACTGACTATGTTGTAAATCATTTTGATGTGATGTTGAATAAATAATGCATTAAATTGAATGTAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62495 lncRNA upstream 29681 51333433 ~ 51342260 (+) False shank2b
TU62494 lncRNA upstream 31014 51339067 ~ 51340927 (+) True shank2b
TU62530 lncRNA upstream 82429 51289109 ~ 51289512 (+) True G56185
TU62506 lncRNA upstream 116297 51255351 ~ 51255644 (+) True G56162
TU62500 lncRNA upstream 125690 51245958 ~ 51246251 (+) True G56156
TU62766 lncRNA downstream 18661 51442964 ~ 51443171 (+) True G56415
TU62808 lncRNA downstream 49393 51473696 ~ 51473921 (+) True G56455
TU62828 lncRNA downstream 75902 51500205 ~ 51500443 (+) True G56475
TU62841 lncRNA downstream 94432 51518735 ~ 51555869 (+) True G56487
TU62861 lncRNA downstream 125066 51549369 ~ 51565773 (+) True G56507
XM_036979571.1 mRNA upstream 30308 51214830 ~ 51341633 (+) False shank2b
XM_036979569.1 mRNA upstream 30308 51232161 ~ 51341633 (+) False shank2b
XM_021604338.2 mRNA upstream 201597 51164077 ~ 51170344 (+) True acte1
XR_005051364.1 mRNA upstream 216545 51154507 ~ 51155396 (+) True LOC118964319
XM_021604316.2 mRNA upstream 296496 51071696 ~ 51075445 (+) True LOC110524544
XM_021604377.2 mRNA downstream 25050 51449353 ~ 51451460 (+) False LOC110524575
XM_021604390.2 mRNA downstream 30828 51455131 ~ 51458797 (+) True LOC110524584
trnap-ugg-2 mRNA downstream 205865 51630168 ~ 51630239 (+) True trnap-ugg-2
trnap-agg mRNA downstream 206529 51630832 ~ 51630903 (+) True trnap-agg
XM_021604437.2 mRNA downstream 377694 51801997 ~ 51851775 (+) False LOC110524604
TU60888 other upstream 1287945 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2478029 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2988684 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3346983 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 4113043 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 25519 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2241912 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2563837 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2620546 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3296885 54721188 ~ 54721463 (+) True G59963

Expression Profile