RNA id: TU62774


Basic Information

Item Value
RNA id TU62774
length 531
RNA type TUCP
GC content 0.53
exon number 3
gene id LOC110524575
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51449353 ~ 51451460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTACGAGCACCTTGGGGGAGCACCGAGACACAGAAAGTTGTACTGTGCCACAAAGTATCACTTACAAATACATCCCAACGGGAGAATAGACGGGACCCTGGAGGAGAATAACCCTTTCAGCATATTGGAGATAGCAGCAGTGGATGTGGGAGTGGTGGTGATTAAAGGACTGTTCTCTGATAGATATCTGGCCATGAACGAAAAAGGAGGACTATATGCATCGGCTGCCTTCAACCAGGAGTGTGAGTTCATGGAGCGGATCCATGAGTTAGGCTACAACACGTACGCCTCTCGCAACTACCAgacaacccctccctccacctcaaCAGGAAGCAGCAGCAGGCGAAGGGCGAGCGCTGAGAGGCTCTGGTACGTGTCAATCAATGGAAAGGGCCGGCCAAAGCGTGGCCTGAAGACTCGCAGGACAGAGAAGGCCTCCCTCTTCCTGCCCAGGGTCCTTGGCCACAAGGACCATGACATGGTTCACCTGTTGTTCAACAGTAGTCTCGGGTACAGACAGACTGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62766 lncRNA upstream 6651 51442964 ~ 51443171 (+) True G56415
TU62495 lncRNA upstream 107562 51333433 ~ 51342260 (+) False shank2b
TU62494 lncRNA upstream 108895 51339067 ~ 51340927 (+) True shank2b
TU62530 lncRNA upstream 160310 51289109 ~ 51289512 (+) True G56185
TU62506 lncRNA upstream 194178 51255351 ~ 51255644 (+) True G56162
TU62808 lncRNA downstream 22761 51473696 ~ 51473921 (+) True G56455
TU62828 lncRNA downstream 49270 51500205 ~ 51500443 (+) True G56475
TU62841 lncRNA downstream 67800 51518735 ~ 51555869 (+) True G56487
TU62861 lncRNA downstream 98434 51549369 ~ 51565773 (+) True G56507
TU62910 lncRNA downstream 156679 51607614 ~ 51607991 (+) True G56554
XM_036979578.1 mRNA upstream 25519 51358288 ~ 51424303 (+) False LOC110524569
XM_036979586.1 mRNA upstream 25519 51368597 ~ 51424303 (+) False LOC110524569
XM_036979593.1 mRNA upstream 25519 51368597 ~ 51424303 (+) False LOC110524569
XM_036979603.1 mRNA upstream 25519 51368597 ~ 51424303 (+) False LOC110524569
XM_036979606.1 mRNA upstream 25519 51371939 ~ 51424303 (+) False LOC110524569
XM_021604390.2 mRNA downstream 4196 51455131 ~ 51458797 (+) True LOC110524584
trnap-ugg-2 mRNA downstream 179233 51630168 ~ 51630239 (+) True trnap-ugg-2
trnap-agg mRNA downstream 179897 51630832 ~ 51630903 (+) True trnap-agg
XM_021604437.2 mRNA downstream 351062 51801997 ~ 51851775 (+) False LOC110524604
XM_036979638.1 mRNA downstream 364402 51815337 ~ 51851775 (+) False LOC110524604
TU60888 other upstream 1365826 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2555910 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 3066565 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3424864 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 4190924 47227246 ~ 47258898 (+) True LOC110520864
TU65446 other downstream 2215280 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2537205 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2593914 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3270253 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 4454573 55905508 ~ 55923376 (+) True G61202

Expression Profile