RNA id: trnap-ugg-2


Basic Information

Item Value
RNA id trnap-ugg-2
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-2
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51630168 ~ 51630239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62910 lncRNA upstream 22177 51607614 ~ 51607991 (+) True G56554
TU62861 lncRNA upstream 64395 51549369 ~ 51565773 (+) True G56507
TU62841 lncRNA upstream 74299 51518735 ~ 51555869 (+) True G56487
TU62828 lncRNA upstream 129725 51500205 ~ 51500443 (+) True G56475
TU62808 lncRNA upstream 156247 51473696 ~ 51473921 (+) True G56455
TU62896 lncRNA downstream 43336 51673575 ~ 51674734 (+) True G56541
TU63201 lncRNA downstream 134542 51764781 ~ 51764994 (+) True G56835
TU63228 lncRNA downstream 156217 51786456 ~ 51786792 (+) True G56860
TU63229 lncRNA downstream 156597 51786836 ~ 51787037 (+) True G56861
TU63288 lncRNA downstream 215691 51845930 ~ 51846185 (+) True G56916
XM_021604390.2 mRNA upstream 171371 51455131 ~ 51458797 (+) True LOC110524584
XM_021604377.2 mRNA upstream 178708 51449353 ~ 51451460 (+) False LOC110524575
XM_036979574.1 mRNA upstream 205865 51371941 ~ 51424303 (+) False LOC110524569
trnap-agg mRNA downstream 593 51630832 ~ 51630903 (+) True trnap-agg
XM_021604437.2 mRNA downstream 171758 51801997 ~ 51851775 (+) False LOC110524604
XM_036979638.1 mRNA downstream 185098 51815337 ~ 51851775 (+) False LOC110524604
XM_021604428.2 mRNA downstream 197619 51827858 ~ 51851775 (+) False LOC110524604
XM_021604462.2 mRNA downstream 258161 51888400 ~ 51894917 (+) True LOC110524623
TU62774 other upstream 179233 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 1546172 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2736256 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 3246911 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3605210 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 2035976 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2357901 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2414610 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3090949 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 4275269 55905508 ~ 55923376 (+) True G61202