RNA id: XM_021604437.2


Basic Information

Item Value
RNA id XM_021604437.2
length 4955
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110524604
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51801997 ~ 51852291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTACCAAGAAAGAACTGTCCTGCGGGTTTCATaagagagccagggagagagagagagaggaagattatTTTTTAACTTAATTGCAGGCCAATTCATAGATTTAACGATTTAATCAAATAAACAGCCTACATTTCGAATGACTACCCGTTTATGATATGCAATAACAAACACTCTGGAAGAGTCCCAGTAAATGGAAACGGGTAAACTCGCGGTTAAACCTTCAACGTTTTCCAGACTACCAAGAATTCcatccgtttctctctctctctctctagaattGGTGGGGGTTGCTTGTTTAAGCCAATTGGCAGAGAGCAACGCTAATGTCATATCGGTGTTGGTCGTGAGCTGAGATCATTACGAACCGGAGATACGGTGACATTCGTAGGTGAACTTTACAGAGTAGACCCTTCACTCGTTTTGCCAACAACATGCAGTCGCCAACATTTGGACGAATCTAACCGCTCAGTTCCGGACAAGTCTACCGGACAGCGGTGCGCTTTCTGGACATTTCATCCTATGCCAATGCGACGTAACGTGAATCGTTTCTACAACTCAAGGAATATTGGTTCTGAACTCTTTGGGGtAGACGGCGTGGTGTGTGATGAACCCGGAGAGTGCGTGTGGTTACCAGGTCGGGGTGCGGGGCCCACGGTCTGTGATGGAACAGAAGGTCAAAAGTCGACTGAACTATGGCTTCCAGAGGAGCTCCACGTCAGACGACGACTCCGGATGTGCCCTGGAGGAGTATGCCTGGGTGCCGCCCGGCCTCAGACCCGAACAGGTCCAGCTGTACTTCTCCTGTCTGCCAGAGGACAAGGTCCCTTATGTTAACAGTCCCGGAGAGAAGTTCAGAATCAAACAACTCCTGTATCAACTGCCTCCGCATGACAATGAGgtGCGATACTGCCAGTCTCTcagtgaggaggagaagaaggagctCCACATGTTCAGTGTCCAGAGGAAGAAGGAGGCACTGGGGAGGGGCTCCCTCAAACTGTTGCCCCGGGCCCTGCTACACAGTGTCTGTGAACATTGTGGGGAGAGCGTCAATGGTGGAGAGATGGCGGTGTTTGCCTCCAGAGCGGGTCCTGGGCTGGTCTGGCACCCAGCATGCTTTGCGTGCTCCATGTGTAGTGAACTGCTGGTGGACCTCATCTACTTCTACCAGGACGGAAAGATCCACTGTGGCCGACACCACGCTGAACTGCTCAAACCACGTTGCTCAGCCTGCGACGAGGTTATCTTCTCTGATGAGTGCACAGAGGCGGAGGGGCGTCATTGGCACATGAAGCACTTCTCCTGTTTCGAGTGTGAGACGGTGCTGGGGGGACAGCGCTATATCATGAAGGACGGGCGGCCATATTGCTGCGGCTGCTTCGGCTCGCTCTTCGCCGAGTATTGCGAGGCCTGCAGAGAACACATCGGGGTGGACAATCCCCAGATGACGTATGACGGTCTCCACTGGCATGCCACCGAGGGTTGTTTCTGCTGTGCCCAGTGTAAGAGCTCTCTACTGGGCTGTCCCTTCCTGCCCAAGCAGGGCCGCATTTACTGCTCCAAGGCCTGCAGTCTGGGAGAGGATGTCCACACCTCGGACTCCGCTGACTCCGCCTTCCAGTCTGCTCGCTCCCGCGAATCCCGCCGCAGCGTCCGCATGGGCAAGAGCAGCCGCTCGGCtgaccagtgccgccagtcactCCTCTTCTCGCCCTCCGTCAACTACAAGTTCCCTGGGTTCACCGGTGATTCCGGCAACACTGACACCCTCACCAACAAGCTGGCCCACCTGGGTTTAACCAACGAGGAGCAATtttggaaggggagggagggcaCTGAGGCTCCAGAGGAccgggaggaagaggagtgggccGAGCACGAGGACTACATGACACAGCTGCTGCTCAAGTTTGGGGAGCAAGGTGTCTTCCAGCAGGGTGAGACAGTCGACTCCAGACCCCCAACAGATCTGTGGATGACCGAGGCAGAGGTCAAGATGAAACAGTGTGAGCCTCAGGGCTCAAGggctgggagaggtggaggagggtcaGGCAGCCAAAGCCTGGCCAGTAAGAAGTACCAGGCAGATATGTACTGGGCTCAGTCCCAGGATGGGTTAGGGGATTCAGCCTACGGTAGCCACCCAGGCCCTGCTAGCAGCAGAAAGCTCCAGGAGCTGGAGATGGAGCACAGGGCTGGTAGCATCGGGGATAAAGGCTTCCAGAGGGAGGAAAAACAGTGGTATGATGACTCTCTGGAGTGTATCACAGATGGGCTGAAACAGACAGATCAGAGCGCCAGGGACTCGATGGACTCACTGGCACTGTCCAACATCACCGcGGCATCAGTAAACGGAGACAGTAAAGAGCGCCCTCTGGTCTACTCCTTACAAAACTTCCAGGAGCTTGAGGCAGAGAACTGTGAGAACACAAGCAACATGGGAACTCTCAATTCCTCCACGTTACACTGCAGTGCCAATTCCCTGAAGAGCCTTACATCCGAGCTGGAGCAGGTGGAGGAGAATGTACCAGAGGAAGAAGcggctcctcttccctctcccccaaAGCCACCTCACGTCCCGGAGTTGAGGAGGACTCGCTCCCAGTCCCGACCCCAACAGGTCAAGTTCTCCCCAGACGTCATTGACAACAGTCACTATGGTGACCTGCCAGTGCGCCAGCCCCCCATGAGCGAGCGGACGCGGCGGcgtgcctaccactttgaagagcAGGACCCGGAGCTTCTTGGTTCAAGCTCCGGCCGccatcacaaccaccaccatcaccacaggAGGCGCCGCAGCCGCAAGTCCCGCTCCGACAACGCTCTCCACCTGGTGCCCAAGGAGAGGGCCAACCGCATGTACTTCAGAGAGGACCATAGAAGCCATAGGAGCCACGGCCACAAGGGTCCCCAGCAGCAGACCTTCCTGCCCAACCAGCAGAGGTATGGCCAGGGCCAACCTGGTCACCCCCATCCCCACCACACCACCTCAGATTACGGGCTCCAGCAGGGCCCAGCCATGGAGAGGTTCCTGGGGATGTGTGGGGACAGGGGCGAGGATGACTGGTGCTCCACCTGCTCGTCTTCCTCCTCAGAGTCTGAGTCTGAGGAGGAAGGCTTTTTCCTGGGGCAGCCCATCCCCCAGCCACACAGACACTACTATGATAACCTACCCAGCCCTAGCCACGTAGCAGGCCTGCCCTCCCCGCCTTACGGGGGAGTCCCACGGACTAAGTCCAAAAAAAAGAAGGGGCACAAGGGGAAAAACTGTATAATTTCATAACTTTTTTGTGGAGTACCCTTTTAAATTATACTGTCTGCATTGCAACCCCCCTCTAGATCTCTCATTGCCACTGTTCGGAATATGGAAATGGCCTGCCTGCTTGCAACAAATGCCCAAATTCTTTTGCCAACTGGTTGTACTACATGTCTTCTCGAGATGGATGACAAAAAACAGACATGTTTGTCAGTGGAATGGCATTGAAAGACTAAACAGATtgcatattattttttttaacctttatttaagtaggcaagtcagttaagaacaaattctcatttacaatgatggccaaaccctaacaacgctgggccaattgtgcaccgcactatgggactcccaatcacttccggttgtgatacagcctggaatcaaaccaaggtctgtagtgacgcctttagcactgagatgcagtgccttggaccgcggcaccactcgggagccccagttATTAAAGGATCTACTATTTTGCTAACCAGGGTTTTAAAAATGAAAGTATGATAGTTTCTGCCAGCAAAGGTattatagaatacagtatgatGACATCAGCTATTTCCATGTATGTGCTTCTTTTGTATTTAGGCTTACCAGTATGCATTTGCAGCCCTGACAAGTGGGGATAGCATATGTACTATAAAGGGCCTGGTTGGGTTGACTATTTTATTTATGGGTCATATTATATTGTAAACAGATCAGTCATCTGTATAAATGTAAAAACTGGAATATAAAAGGCTAAGATAATAattgtaataaaaaaaacataacgtcaggttttttgtttattttaaaaGGAGAGCAATGTCCCCCAAAAGTTTGTACAGAACGAGTATGTGTATGAAGAATGAATATAGTGTAGAGGAACAGAAACTCCAGAAAGCTTGTTAAATAACTTTTATTACCTAACAGAAAAAGTAACACAAAGAacagacagtaccagtcaaaagtttggtttgcgcttagtgggactatcatttgtttttcaacaggacaatgacccagggaactccttcaagacgattggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaaactgtcaatgcaaagggtggctactttgaagaatctcaaatagaaaatacattttgctctgtttaacactttcttggttactacatgattccatagtttgtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttgactggtactgtatgacaGTAAACACCATAAAATATGCAAAACATTGGTTTTCGGACAAGTTTTCTGGAGAGAACTAAACGGTATTGAAACAACTCAAAACTCTTCATTACGGTACACAAATGTTGATGACTGAACTCCAAAAAGCGTATTCTTTCCATTCCTtcggtgtacacacacacacacagtgtacctTTTAAAAAATCTGTGTGATTTGGTTGTTTAAGTTGGTCAGAAAGCCAGAAGTGGAGTTCTGCAATGTGTCTAACTAAGGAGTGAAGAAATTACTGCTGGACATGAGGTTTAAAGGAACGACACCTGAAATCTATATAAACAGcatgggaaaaaaacaaaaatattctTTCTAACGCCATAAAGTGACCTCAAATAAGCATGTTTCCAATAATAAAATATTTTAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63229 lncRNA upstream 14960 51786836 ~ 51787037 (+) True G56861
TU63228 lncRNA upstream 15205 51786456 ~ 51786792 (+) True G56860
TU63201 lncRNA upstream 37003 51764781 ~ 51764994 (+) True G56835
TU62896 lncRNA upstream 127263 51673575 ~ 51674734 (+) True G56541
TU62910 lncRNA upstream 194006 51607614 ~ 51607991 (+) True G56554
TU63245 lncRNA downstream 15926 51867701 ~ 51919894 (+) True G56876
TU63360 lncRNA downstream 139334 51991109 ~ 51993312 (+) True G56985
TU63653 lncRNA downstream 261100 52112875 ~ 52113109 (+) True G57262
TU63703 lncRNA downstream 309777 52161552 ~ 52161839 (+) True G57312
TU63731 lncRNA downstream 350929 52202704 ~ 52208886 (+) True G57337
trnap-agg mRNA upstream 171094 51630832 ~ 51630903 (+) True trnap-agg
trnap-ugg-2 mRNA upstream 171758 51630168 ~ 51630239 (+) True trnap-ugg-2
XM_021604390.2 mRNA upstream 343200 51455131 ~ 51458797 (+) True LOC110524584
XM_021604377.2 mRNA upstream 350537 51449353 ~ 51451460 (+) False LOC110524575
XM_036979590.1 mRNA upstream 377694 51371941 ~ 51424303 (+) False LOC110524569
XM_021604462.2 mRNA downstream 36625 51888400 ~ 51894917 (+) True LOC110524623
XM_021604484.2 mRNA downstream 48548 51900323 ~ 51917984 (+) False LOC110524629
XR_002473620.2 mRNA downstream 48556 51900331 ~ 51916905 (+) False LOC110524629
XR_005052038.1 mRNA downstream 48556 51900331 ~ 51916905 (+) False LOC110524629
XM_021604473.2 mRNA downstream 48556 51900331 ~ 51917984 (+) True LOC110524629
TU62774 other upstream 351062 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 1718001 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2908085 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 3418740 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3777039 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 1814440 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2136365 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2193074 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 2869413 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 4053733 55905508 ~ 55923376 (+) True G61202

Expression Profile