RNA id: XM_021604448.2


Basic Information

Item Value
RNA id XM_021604448.2
length 2500
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110524618
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51850982 ~ 51886676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAAGATAGGCGGCGGTAAACCCCGCGTAACATACTGCACTCCGCCAATCAAACACCGACGAGGAAGAGGTTGAATTTTACTCGTGGTGTTTGTTGTCAAATGTTGCACATGCAGAAAGGGTTGGAACTGTATAAAAAAATCAACCACTTTATCGCAAAAAGTGCAAAACTACCTTTTAATACACAGAGCACGTTCAACTGGTTTTACATTCTCCAAGTCCCACATCGAGGAGCCCTTCAGCAACTTGGATGGCGTACAGGCGAGACCGAAGCCGAATCAGAGAGGCCACCGATGAGCATATTTCAGAGAGAGCGGGAACGTACCAGAGAGTTGTGAATGTTGTTGAGAGGAGGACTGCTGTGACAAGACCGGAGCAAGAATATGACAGAGAATTTGAATATGAAACCAAGCGGTATGGTGGCGTTCAAAGTTACCATGACGATGACCAGATAGGATACCCTAGCGACAACATTCACACAGGAAGTGATCGTGGGTACCATGGTGACGTGGTAGGGAGCATCCGAGGGAAGAACTCCCCATCTCCCCGACAGGAGGACTACAGGGATCCATACTACAGGGGATCCAGAGTTGATTCTCAGATGGGCCGTCAAGGAGGGATGAGGAACAGCAGCAGAGTGGGCTCCCATCCCAGCAGCAGAGTTCAAGTGATAGCTCCTCTCTCGAGGACCATGTCTCCAGCCTACCCCAACCTGAGGGAGAACCCTGAGGGTATCAGGCGGAGAGTCCTGGGCCCCTACCCTGCAAGCCCTGCCGGGGACTCGTACACTAGATTACGGGACCGCTCTCCTATCAGAAGGGATACTCCACCAATAACAGGCTCCGTTCTCATGCGCTCCGGGTCCAACACCAGCAGAAGGAGCTACTCCCCAGACAGGGACCAGGCTGGCTTCCCCTACCATCAGAAGAGGTATAAAGAAGAGCCTCACAGCCAGAGCAGAGAGCCTGATAAGCCCAGGTTGCTAGGCCACACAAAGACTGCCTCCATAGACGGTTCTCCACACAGCGCTGTCTCAATCAAGGAGGAACTTGACCCCACCCCAGCCCTGCTAGCAGAGCCTGAGGACACAGTGCCGGCCAAGGATGAGACCGACCAGACACAGAAGGCCAACTTCAAGACACGGCGCTCTCAAGCCATCGCAGCTAAAGCCCTCGAAATTGAGAAGctaTACAAGCAGGACTGCGAGACGTTTGGAACGGTTGTCAAGATGCTGGTGGTCAAGGAGCCCAGTCTGGAGAAGCTGCTCCAGAACCCTCTGAAAGACAACCTGATTGAGATCAGGGAGCTTTGCCTTGACGACCTCCGACACTTTATCATAGAGCTGGACCAGGTCATGAAGCCAGAACCATCAACATGAGGGGGAACCACAAAACCCTTATTACGTGCAGGTATTGATGGACCAGAGGTGGCATTTGTGTGGTGGCATAGAATACTGTGAGAGGAGGCAACCTAGTGTGGCATCCTCTCCACACTGTGATTAAGAAGAAATCATATTCATAGAAAAAAAATggtaccccttttttctccccaatttcgtgatattcAATTGATAGTTAGTCTTGTcgccatcgctgcaactcccgtacggactcgggagaggcaaaggtcgagagccatgcatcctctgaaacacgaccctgccaagatATTCAAGTACATTTTCAAGAAAAAACACTAACAATTGTTCACTAAAATATTTTATTATTGGAAACATGCTTATTTGAGGTCACTTTATGGCGTTAGAAagaatatttttgtttttttcccatgCTGTTTATATAGATTTCAGGTGTCGTTCCTTTAAACCTCATGTCCAGCAGTAATTTCTTCACTCCTTAGTTAGACACATTGCAGAACTCCACTTCTGGCTTTCTGACCAACTTAAACAACCAAATCACACAGATTTTTTAAAaggtacactgtgtgtgtgtgtgtacaccgaAGGAATGGAAAGAATACGCTTTTTGGAGTTCAGTCATCAACATTTGTGTACCGTAATGAAGAGTTTTGAGTTGTTTCAATACCGTTTAGTTCTCTCCAGAAAACTTGTCCGAAAACCAATGTTTTGCATATTTTATGGTGTTTACtgtcatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacaaactatggaatcatgtagtaaccaagaaagtgttaaacagagcaaaatgtattttctatttgagattcttcaaagtagccaccctttgcattgacagttttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaatcgtcttgaaggagttccctgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccaaacttttgactggtactgtctgtTCTTTGTGTTACTTTTTCTGTTAGGTAATAAAAGTTATTTAACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63478 lncRNA downstream 1882 51848061 ~ 51849100 (-) True G57097
TU63477 lncRNA downstream 5960 51844485 ~ 51845022 (-) True G57096
TU63433 lncRNA downstream 7767 51794340 ~ 51843215 (-) True G57056
TU63200 lncRNA downstream 86484 51764175 ~ 51764498 (-) True G56834
TU63130 lncRNA downstream 156082 51683936 ~ 51694900 (-) True G56766
TU63495 lncRNA upstream 1728 51888404 ~ 51889159 (-) True G57114
TU63565 lncRNA upstream 105827 51992503 ~ 51993698 (-) True LOC110524646
TU63654 lncRNA upstream 226185 52112861 ~ 52113083 (-) True G57263
TU63672 lncRNA upstream 241150 52127826 ~ 52128078 (-) True G57281
TU63675 lncRNA upstream 246832 52133508 ~ 52133750 (-) True G57284
XM_021604414.2 mRNA downstream 176009 51673553 ~ 51674973 (-) False LOC110524599
XM_036979616.1 mRNA downstream 359263 51479046 ~ 51491719 (-) True LOC110524590
XM_036979564.1 mRNA downstream 706237 51092525 ~ 51144745 (-) False zgc:101566
LOC110532401 mRNA downstream 859584 50897530 ~ 50991398 (-) True LOC110532401
XM_021604286.2 mRNA downstream 962486 50871475 ~ 50888496 (-) True mapk8ip1a
XM_021604493.2 mRNA upstream 105761 51992437 ~ 52100196 (-) False LOC110524646
XM_036989650.1 mRNA upstream 305946 52192622 ~ 52197205 (-) True LOC118966705
XM_021604512.2 mRNA upstream 320120 52206796 ~ 52267115 (-) False LOC110524655
XM_021604503.2 mRNA upstream 320120 52206796 ~ 52321595 (-) True LOC110524655
XM_036979682.1 mRNA upstream 447219 52333895 ~ 52399230 (-) False LOC110524680
TU63128 other downstream 103762 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 446639 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1058913 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 1067138 50777747 ~ 50783844 (-) False LOC110524514
TU61958 other downstream 1067138 50777747 ~ 50783844 (-) True LOC110524514
TU64168 other upstream 609222 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 1252782 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 1448048 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 1449933 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 1539288 53425964 ~ 53426316 (-) True G58718

Expression Profile