RNA id: XM_021604493.2


Basic Information

Item Value
RNA id XM_021604493.2
length 4631
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110524646
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51992437 ~ 52100196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtgtgtgagtgagtgagagacagagatagagagaggagacgagagagagagagaggagacgagagagagagaggagacgagagagagagagagagagagagagagaggcaccggCTGATGCTGAAACCGCTACCATTACTATCACAGCTGCTCCTACTGCTGTATCCATTACAGTGCTTCACATTAGAGCTTCCTTCTGTTCTACCACGCTGGAGCTTTGCATATCCTTGGCTCGGTGTGTATGAGGGTGTTTGTTTGCGAATGTGAGTGTGTcaatgtgtggtgtgtgtgagatgCCCACTACGGAGTGACTGATGAGAACGGGTGCACCGGTCTGGAGGGTGACCCCCTGTCCGTACGGTtccactgctgctgctgtcgcTCGGGGACGATTGGACGCCCGGCGTTGCCACGACGATTAGAATGGGCTGCAATCTGTGCACTTTACAGAAACGAGAGGAACACTATAAGCTGCTGTATGAGATCGCACAGGTGAATGGAAAGGACCTCTCCAAGGCCAGTCATGACGAGGCAGTGGAGGCGTTTCGCTCTGCTAAGGAACCCATTGTGGTGCAGGTCCTCAGGAGGAACACTGCTGGCCgcggcagccatgttagctccactCAGGAAGGGGACGTGGTGGACGTGGTGGACATGTGCACGCAGACCGACATCACCTTTGAACATATCATGGCCCTGGCCAAGCTCCGGGCCACTACTCCTCCCGTGCCGGACATCTGCCCCTTCCTGCTGTCTGACAGCTGTCACTCTCTCCACACCATGGAACAGGATTACTATGAGGGGAGAGCtgatggagggaggacagaggagtttGAGTATGAGGAGGTGGAGCTGTGTCGACTGAACAGCCAGGAGAAGCTGGGCCTGACGTTGTGCTACAGGACAGACGAGGAGGAGGACATGGCTATCTATGTCAGTGAGGTTGGGCCAAACAGCATCGCTGCAAGGGACGGGCGCATAAGAGAAGGAGACCACATTTTACAGATCAATGGTCAGGATgtgcaggacagagaggaggctgtaGCTGTGCTCTCCAGTGAAGACACAAGGAATATCATACTGCTGGTCGCCAGGCCCGAGTTACAGCTAGAGGAGGCGTGGTTGGATGATGAACACAGTGAGTTCCTGGAGCAGTTGAAGATGGAGATGTTGGAGGAGcagcagagagaagagatggagctGGAGGCACTACAGGAGGAACAGGAGCAGCCCAGAGGAACACAAGAGGATGACATCACTGCCACCTGTTCCTCCCTAACTCAGGACATGGACAGTGAGCTGGGGATGTCTGACCACAATGCCCTTCTAACCCACATCCAGAGACGACTGTCCCAGTGCCTGAGGGATAGACAGGACACTGGGCATCATCGTCtggacgaggaagaggaggaagaggagttggaggtggaggagggtgaCCGCTTCCAGCAGCTCCTGGAGCTGAAGTGTCAGATCCGTAACAGCGGGGAGTACGACCTGTTCTACAGCAGACACAGCACCATCGAGTGTAGTCTGGGAGAGCCGGCTGGCGGCGTGCAGCATGAGCTCCGCATGCTCAACGAGGAGCTCTGCAGCATTGAGCTTGAGTGCCAGAACATCATGCAGGCCCACAAGCTCCGCAAGGGACCGGGGGGGACCCAGAGAGACCAGGTGCAGCAGGTGTCAACCATAACCGGCCACCCAGTGCCCAAGGACCAAAGCTTCCTACGAGGCAGCAGGGACTCGCCCAGCAGGGGCAAGCTGGCTGACATCAACAAGCGCCAAGAGAAACCGGAGAAGTCAGACAAGGACAGCTCGAGCGCCTACAACACGGCAGAGAGCTCGCGCAGCACGCCGCTGGCCATGGACCGATCCCCCGAGCACTCCCTCCAGAGGAGGATGGTCACCATCACCAACCAGAGGAACCTCCGCAGCAGCCTGGCAAGCCTTCATGCCACAGCCAGCCCCAGTCCTAGTCCCAGCCCAACACAACGGTCGCTCCACCGAACCCCCATCCCAGGCAAGGCCAGTAGCCCCGACCACAGCCCCAACCGCTTCGAGTCGGACCAGACTGCCCCGGCAGACGATGAAAGGAGCGGGAACGGGAAGGTGAAGCCTCAGCATCCTCCCAGGGCTTCCCAGATCCCTTACCTCTCCCCGTCCCGTAGCTCCCAGCATAGGCAGCCCAACACCAACATCCCGGCACACTACCAGAGCTACATGCAGCTGATCCAGCAGCGCTCGGCCGTGGAGTACGCTCAGAGCCAGCTCAGCCTGCTCAGCGTGGTCAAGGAGCCCCAGTTGATCCCCACCAGCGAGCCCAAGATGGAGTGGAAGGTCAAGATCCGTTCCGATGGCACGCGCTACATCACAAAGAGACCCATCAGGGATAAGATCCTGCGGGAACGCGCCCTCAAGATCAAGGAGGAGCGCAGCGGCGGGATGACCACGGACGACGACGCTATGTCCGAGATGAAGATGGGGCGGTACTGGAGTAAGGAGGAGAGGAAGCAGCATCTGGTCAGGGCTAAAGAACAGCGGAGGAGACGAGAGTTCATGCAGCGGAGCAGGCTGGAAAGCCTGAGGGAGAGTCCTCAGAGCAGCAGCGAAGGACGCAAGGAGGTcagcatcatcgaactgagcCACAGGAAGATGATGAAGAAGCGCAACAAGAAGATCCTGGACAACTGGATGACCATTCAGGAACTGATGACTCACGGGGCCAAGGCCCCTGATGACCCCAGGGCCAAAGTACATAACGCCTTCCTGTCGGTCACCACTGTATAATATACAACAAACACAATCTAcagcagtgtttctcaaccttATTCATACCAGGGGCCAGCAAGCTATGGTTCTTACCTTCTTGGAAGGCAGCTTATTTTAATAGGGACTAACATGAGTACTGACAAAAAAATGAGTTTCAGCTATTAAACATCTTAGGGACCGGTCGGCAACATCCCAGGGACTGTTCCTGGCCCTTAGACCAGAGGTTGAGAAATACTGATCTAGCTACAGTACCCCATGTGGTATAATATACTTGCCTCGTTCAATGTGGCATTTTTATGAGGACGATAGTAATATTTTCACAACTTTGTTACCCGAAAAAATAGCATTTTGTAAAGAATTTTAACCAATGTCAattttgtttatatttttcttcatgtTTTTCATGATGTCACCCTCTTCCAGATCCAGAAGCACTTTTGTATGAGATTACTGTGCAATTATCTTTCTTAGTTGATCGTTTTCTTAGTTCATCCTGTGAAAATGttaaattattttcatatttCTGTTCTGTTATGCAGTGATTCCAACCCACGCAGATCAGGAGACTTGGACTCCCTCAGGGGGAGACATGTTGAATTTAATGTACAGTACACGGAAATGTATTGTCATCCTACTTCTTGCCGGTCTAGATTTGATGAACCAGCCATTAGATTTATCGTTCAGGACTTTCTACAAATGTCACAGATACATTCAGAACTTTCGGCCAATTCCACACGAGCCCATACGACTTCAACTACAACCACTGATTTACCAAATATAATGATACATTCCTTCAAAACAAGATGGTTAAGTTGGCATTTGATAACGATAACTTGGACTGAATGCATACAGCTTCTACCTGCATATTCTAAGGGAACCCATGTTGAGATAGACAGATTAGCTAAGGACTGGACTACCTGACCTATACCGTTTACAGTATGGATCATCTAAGCTTTTCAAGCCAAGAATGTATCCCCATTCCAAAACAAAGGACCATTTGCAATTTCCTTTGCAATCATTTTAATTGCAAAGGATTATTTTATTCCAAGAGGCTATGAAGACTAGCTGTGATATGTTGCAGCCAACAATTACTCTGCAGTGCATCAGGAGTTCTTCCAATGCAATACTGGTAAACCCTCTTTCATAAGATTTTGCATATTTATGTTTACATAATCCTTTATTTTACACACAGTAGGTATTGTACAATGTTAATGTTTCTCAACAAAGCCTTAAACAGTTGCCAATTAGATTCATGTAACTTTGTTGTGGCAAGAAATTCGTTATGAGCTGTCTATGGTTCTCTGTTGCAGCTCAAAATGGTTCAAACTTGAAGCTCAGGCTTCACTTGATGTTTTTAACAACGCCAGCTCATTTCAGAGCCCACCCAACACTCTGTATGCTTGTACTTACTAGTTATGGATTGGATGATTGCCAGTGAGCAGGACTCATAACTTGGCAGTACATTTTCCAATTGTGAAATCAGGTTTTGCATATGTATAACTGCATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTTTCAGTCTGGTTCTGTGTACAGTAGAATACATACTTGTTTCAAACAGCTCATTTTCAGTTTAAATATTGTAAATGTGAACTTTGAAACCAACTCCTGTATTTGTTTCAAGTCAATGTCAATGGTCTTATTTCAAGTAATATGTAGTTGGCACACCTGTAGCCAGGTAAACGTGTGGTATAATTGTGATCATTGAAAAATGACATGAGAATAAATgatagttttttttctttctttatggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63495 lncRNA downstream 103278 51888404 ~ 51889159 (-) True G57114
TU63471 lncRNA downstream 125555 51850982 ~ 51866882 (-) True LOC110524618
TU63478 lncRNA downstream 143337 51848061 ~ 51849100 (-) True G57097
TU63477 lncRNA downstream 147415 51844485 ~ 51845022 (-) True G57096
TU63433 lncRNA downstream 149222 51794340 ~ 51843215 (-) True G57056
TU63654 lncRNA upstream 12665 52112861 ~ 52113083 (-) True G57263
TU63672 lncRNA upstream 27630 52127826 ~ 52128078 (-) True G57281
TU63675 lncRNA upstream 33312 52133508 ~ 52133750 (-) True G57284
TU63692 lncRNA upstream 42656 52142852 ~ 52143091 (-) True G57301
TU64013 lncRNA upstream 212210 52312406 ~ 52313295 (-) True G57589
XM_021604448.2 mRNA downstream 105761 51850982 ~ 51886676 (-) False LOC110524618
XM_036979643.1 mRNA downstream 105761 51850982 ~ 51886676 (-) False LOC110524618
XM_021604414.2 mRNA downstream 317464 51673553 ~ 51674973 (-) False LOC110524599
XM_036979616.1 mRNA downstream 500718 51479046 ~ 51491719 (-) True LOC110524590
XM_036979564.1 mRNA downstream 847692 51092525 ~ 51144745 (-) False zgc:101566
XM_036989650.1 mRNA upstream 92426 52192622 ~ 52197205 (-) True LOC118966705
XM_021604512.2 mRNA upstream 106600 52206796 ~ 52267115 (-) False LOC110524655
XM_021604503.2 mRNA upstream 106600 52206796 ~ 52321595 (-) True LOC110524655
XM_036979682.1 mRNA upstream 233699 52333895 ~ 52399230 (-) False LOC110524680
XM_036979695.1 mRNA upstream 233699 52333895 ~ 52399230 (-) False LOC110524680
TU63128 other downstream 245217 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 588094 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1200368 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 1208593 50777747 ~ 50783844 (-) False LOC110524514
TU64168 other upstream 395702 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 1039262 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 1234528 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 1236413 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 1325768 53425964 ~ 53426316 (-) True G58718

Expression Profile