RNA id: XM_021604512.2


Basic Information

Item Value
RNA id XM_021604512.2
length 5251
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC110524655
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52206796 ~ 52321595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTCCAACACGCTGATATTCTTGACGCTTCCAAACAGAGGAGTCTACAGCCATGACTTAGGGCGAAGCTACTGTGGTGCTGACTGAAAAGCAGCCTGTCCTGCTAATGTTTCGTCATCAGCCGTGGTTCTAAGCATCACCTCAGGGGGTTCTACACAGAGCAACATGCTGCACCTCACTGtgctcctccttttcctcctgtCCCTCACTTTCCCCTCCACGGATGCATCTGTCTTCGGAGGGGAACCTGGTTTCTACGGAGACGATGCTACAGGTTACGGTCCGGTGTTTGAGGATCAGCCGGTCGAAACCATCTACCCCGAGGAGTCGCCTGAGGCCAAAATCACCATGAGCTGTCGAGCACGAGCCAACCCACCTGCCACATACCAGTGGAGGTTGAACAGCCGGAGCATAGACCTGGATGGTGATAACCATTACACTCAGGTCGGGGGCGACCTGGTCATCTCTAACCCCATCAAGAACAAACACGTTGGGAACTACTCCTGTGTGGCCACCAACGACTACGGCACTGTGGTCAGCCGAGAGGCTGGCGTCCGGTTTGGATacctGGACTTCTTCTCATCTGAGGAAAGAGAGGCGGTGCACGTGAAGGAGGGCCAGGGGGCAGTCCTGCTCTGCGCTCCCCCACCACACTACCCACACGAGCTGTCATTCCGCTGGATTCTGAACGAGTTCCCTATCTTCATCACGCTGGATAAACGTCGCTTTGTCTCCCAGACTACAGGGAACCTCTACATCTCAAAGGTGGATTTATCAGACAGTGGCAACTACTCCTGCTTCGTCTCCAGTGCCTCCATCGCCAAGAGCGTCTTCAGCAAGTTCATCCCCCTCGTCCCCCTGACTGAACGTCCAATCAGGAAATACCCCGCTGACATCAAAGTCAAGTTCCCAGACACTTACGCACTGGTGGGACAGAATGTCACAATGGAATGCTTCGCCCTGGGAAAccccatccctcagatCCGCTGGAAGAAGATGAACGGAGAGCTGCCGTCCAATCACGACGTCAGCATGGCGGGGGCCCACCTCCACCTGTACAACGTGCAGTATGAGGACGAGGGGACATACGAGTGTGAGGCCCTCAACTCCAAAGGAAAGGACTGGCACAGGGCACGCGTCTCTGTAGAAGCATTCCCGGAGTGGACCGAGTCCATCAACAGTACAGAGAAGGACATCAGTAGTGACTACACCATGTCCTGTGTGGCTAGCGGCAAGCCCAAACCCCACGTACAGTGGCTCAAGAACAGCTATGCCTACGATAAGCGTGATTTGAGGTTCAGTGCTCTGACGTTTAAGGACTCTGGGATGTACCAGTGTATAGCAGAGAATCGCCATGGAGTCATCTATGCTAACGCAGAGCTGCGAGTGATTGCGTGCGCCCCTACGTTTGAGCACAACCCTGTGAAGTGGAGGATTCTGGGAGCTAAGAACGGCAGAGTGGTCATAGAGTGTAAACCTAAAGCAGCTCCCAAACCCTCGTTCTCCTGGAGCAAGGGCACTGAACTGCTCTTCAACTCTACCAGGGTGTTAATCTGGGAGGATGGTAGTCTGGAAATTCTGAATGTGACCGAAGCAGACGAGGGGCGTTACACCTGCTTTGCTGAGAACAATCGGGGCAAGGCCAACAGCACAGGCTCCCTCTCCATCACAGAGGCCACTAAGATCACCTTGGCTCCTTCCAACGCAGACGTGACGGTGGGGGAGAGTACCCACATGCAGTGTGCCGCGTCACATGACTCCACGCTGGACATCACATTCGTCTGGACCCTGGACGCCCACTCCATCGACTTCGACCGGGAGGGATCCCACTATGAACGCAACCTGAATGGTGGTTCCAGTGGAGAGCTGCTCATTAAGAACACCCAGCTGAAGCATTCTGGACGTTACACCTGCACCGCCCAGACCCCTGTGGACAACGTCACCGCATCCGCCAATCTGGTAGTCAGAGgTCCGCCTGGGTCTCCAGGTGGGGTGCGCGTGGAGGAGATCAGGGATAAGAGTGTGCGTCTGATCTGGAGCCGAGGTACAGACAACCACAGCCCCATCTCTAAATACACTATCCAGTGCCGGGACTCGTTCTCTCAGGAGGACTGGCGAGACGCCACCACATccCCTCCAGATGTGGAAGGAAATGCAGAGTCGGCCACGGTGGTGGACTTGTTTCCCTGGACAGAGTATGAGTTCAGGGTGATAGCCACCAACACCCTGGGGACAGGAGACCCCAGCAGCCCCTCTCCCAAAGTCACTACGCTGGAGGCAGTTCCTGTGGTGGCGCCCTCAGACATCGGCGGCGGCGGCGGGACCAGCAGGGAGCTGACCATAACTTGGACGCCAGTGCAGCCACAGTACTACTATGGACGTAACTTTGGCTACATCATCGCCTTTAAGCCCCGGGATGGCTACGAGTGGAGGAAGGTGACTGTGGCAGACCCCGGGGCTAAACACTACGTCCACAAAGACCCGTCCATCCTCGCCTCCACAGAGTTTGAGGTCAAAGTGAAGGCCTTCAACAGCAAAGGGGAAGGACCCTATAGTCTCATGGCTGTCATCTACTCTGCGCAGGACGTGCCATCTAAAGCCCCGACTAGTGTGGGGGCCAGGGCGCTGTCCGCCACTGAGGCCATCGTGTGGTGGCTTCCTGTCACCCAGCACACTGTAGAAGGCTACCAGGTGCGGTACTGGAGGAAGGCGGAGGACAGCGAGACGTCCAGTCAGAGGGTGGTGGTGTCCAGCAGAGAGAACCAGACCAGGCTGGATAACATGAGGCCAGACTCCCACTACCTCATAGAGGTCAAGGCCTACAATGCAGCCGGATACGGACCCCCCAGCCAACACTTACAGATCTACACCAAGAAAGCCCCCCCAAGCCGGCCTCCTAAAATAATCAGTAAAAAGCTGAAAGGCACATCAGTGAATATCGCCTGGGAACATGTTGAGCCCTTGGCCAACGAGTCAACAATAGATGGCTACAAGGTCCTGTACAGGCAGGCCAGCAAATCCACTGGGATGCTGTTTACCACTGGGAAGCGGTCCATAGACCTGCCCATGCACAAGGATGGGGACTACATAGTGGAGGTCAGGGCTCACAGCGAGGGAGGGGACGGGGCTGTGGCCCAAATACGCATCTCAGgtGGAGGCATCATGGCTGCCAAGTCCCTCAGCTTGGCCTCCCTGCTTCTGGTGGCTCTGCTCTGCCTGATGGGCCTCTGAATGTAGCGCCATCTTTCTCTGTCTTCACTGTCCAGTCCAGTGAAGGAGACTCTGTGAAGTTGACGCCTATCTATGACAACTTTGGTTTCCACAACCTTTGGTTTCACCTTGCAGgccaaaaaaaaacatattcccCGTTTCGAGGAATTAAGGCTCTGTTTGTGGGGAAAAAGACACAATACAAAATTTGGACAGAGAAGATATCTGGGATCTCTCTTATTTTAAACCTACATTATCGTTGAAGGAGGAGTGTCTAAAGGGGGTGTTTCAACTTTTTCAATATGCCTTATATGTGAACGGTTACACTTATCTTTCACAATGCCATGACTGGCTCTTGACTGGGTGAGGTGTTAGTGCATAGGTACTGCACCAAGATGGCAggtaactgtttaaaaaaaatattgtgatTACAGGCCTTTCTTGTTCATTCATGAAGGTACAGTAGCTTCAAAGTGTGTGTTTCATTTGATGTATGGCATTATGGGCAATTGTTACAACATAGCATtccatatatagtgtatatatatatatataagcttAGCAGGTAATATAGTTGTGAAGGATAAGTGTATGAGTTTCTGAAAATGTCTTTGTGTTTTATATGCATTTCAGTGACTTTTTCTTCCccctttttcttttcttttttcaaGATGAATTACACCATCCCCTTTACAGAGatacagtcaaatcaaatcttGGTCCCCGGCATCCTACGATTTCTCTTATCGAACATCATCAGACAAAAGAGCAATTCATGtaatactaatataatatatgcaaTGTATATGGTTCTGCTATCTTAATAAGTACATATAGCCAGTACATATAGCTTACTATTAACGCTGTAACTTCTTTGTTCAGAGAAACGTTGATTTTTATCTCACAGAAACATGCTTATTTCCAACTCGTAACGCTCTCGAAAACGAATGGACCCCGTTTACAAGTGTTTGCATGTAGCCATTGTTATCAGAAAGAGTTTCCTGACAAAACAAGAGAAACTTCTCAGCCAGAGTGATGCGAGCATTTTTAGCACATGCATATCTGTGTATGTAAAAGTTGAATGTATTGATGAACTGTGGGAACGAGAAATTAGCTTGAAAACATATCAGACCTGCagtttgtatatatccataaaaaggatgcggattcatgatttcgactggctgagaaaagctgcctgcctgtctgtctcatccggACTCCCGGCACGTTCAttgctatgggacagctggagatcgaatttgaatattgtaACAATGTTGCAAATACCTGAGGGACACACCGCAAGGTTTATACAAAaatccgctgttgaaaactaaatgttagtcttaaagaaatgtgagataatgtctagatgctttttatagtggagatcaagtttataaattgtgaCCGACCGGCTTAAATCGGTCTCGTGccgcaaaatttgaaattgtgttttttttttttttacattggataaaagtggagactcagagctacaaaatggtatttcatacactgcatttgaggaacaatgggaaagtaattctgctttgaaagttgataaacttataaactcacttttgagaaaattgccttttgaatgttttggtacctactggagtagggtgtctacacccattcagcattgttcacaccctcttaaaatgggtggggctaaacaatgaaccataatcccaatccatagagtGCTAGCTAAAGTTATCCAAATAGGTTCagtgttagctagttagcttgctaacattaggctataactagcaatgcgaaATGGCATTCTGATATAACATTAAAGTTACTACACACAGATCATAAGCATAATATTAGCTAGCGAGCCTGCCATctaatgtcagctagctagctaacagcaagctttagcttgcaatgaaaacaactttctgacaaaattataaacgtataatatctgaaactgtagctagactcttacccatatacatggacGAATGCTTCATGGCAGATTGCAACCCCGTTCATTAAATAAGACATCCTGTGTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63692 lncRNA downstream 63705 52142852 ~ 52143091 (-) True G57301
TU63675 lncRNA downstream 73046 52133508 ~ 52133750 (-) True G57284
TU63672 lncRNA downstream 78718 52127826 ~ 52128078 (-) True G57281
TU63654 lncRNA downstream 93713 52112861 ~ 52113083 (-) True G57263
TU63565 lncRNA downstream 213098 51992503 ~ 51993698 (-) True LOC110524646
TU64013 lncRNA upstream 45291 52312406 ~ 52313295 (-) True G57589
TU64099 lncRNA upstream 182722 52449837 ~ 52450058 (-) True G57674
TU64121 lncRNA upstream 199194 52466309 ~ 52466668 (-) True G57696
TU64123 lncRNA upstream 200550 52467665 ~ 52467906 (-) True G57698
TU64141 lncRNA upstream 211961 52479076 ~ 52479302 (-) True G57715
XM_036989650.1 mRNA downstream 9591 52192622 ~ 52197205 (-) True LOC118966705
XM_021604493.2 mRNA downstream 106600 51992437 ~ 52100196 (-) False LOC110524646
XM_021604448.2 mRNA downstream 320120 51850982 ~ 51886676 (-) False LOC110524618
XM_036979643.1 mRNA downstream 320120 51850982 ~ 51886676 (-) False LOC110524618
XM_021604414.2 mRNA downstream 531823 51673553 ~ 51674973 (-) False LOC110524599
XM_036979682.1 mRNA upstream 66780 52333895 ~ 52399230 (-) False LOC110524680
XM_036979695.1 mRNA upstream 66780 52333895 ~ 52399230 (-) False LOC110524680
XM_036979688.1 mRNA upstream 66780 52333895 ~ 52448296 (-) False LOC110524680
XM_036979679.1 mRNA upstream 66780 52333895 ~ 52448300 (-) False LOC110524680
XM_036979692.1 mRNA upstream 66780 52333895 ~ 52448300 (-) False LOC110524680
TU63128 other downstream 459576 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 802453 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1414727 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 1422952 50777747 ~ 50783844 (-) False LOC110524514
TU64168 other upstream 228783 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 872343 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 1067609 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 1069494 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 1158849 53425964 ~ 53426316 (-) True G58718

Expression Profile