RNA id: XM_021604617.2


Basic Information

Item Value
RNA id XM_021604617.2
length 5670
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110524730
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52565022 ~ 52621034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTAAACATCTTAGAAATGTGAACGGGACAGGAGGAGCCAAAACTGCACCAGAGCCAATGGATAAAAGCTCAATTGTTTCAACTCTCTCCGAAGCTTCTGACATCGAACATAAAGAAACAACTGAACTTGGCTTTCTGCAGGACAGTCTGAACACAGAAGAAACGCTCCCAGGCCACCATGGATGACGACTTTGACCAGCGCATGGAATTGAGGAGGCAGAGGCGTGAGCAAATGCGTCTAGACGCAGAGAAGGGCTTCAGCACaactgatgatgatgaggaggtgGCTCGCGAGCGTAGGAGAAACGCTCGTGAGGAACGAATGAAAAAGGCGGAGATGGAGGAGTCTAGCAGCAGCACCGTGACAACAGAGGTCAACAACACTCACAGTGTGACAGAGTCCTCCTCCACCGGTGCAGAGGTGAGCTCCTCAGCAGGTGATGGGGATGACGTGGTACTCCTGGACCGCCTGGCCAAGCGGGAGGAACGCAGACAGAAGAGGTTGAAAGAGGCACTGGATAGACAGAAGGAGTTCGACCCAACCATCACCGATGGTAATGAGAACAGCCAGGAGGAGACCTTCCCTAGCGGCCGCCACCGAggcacagaggaggagaaggaggagaaaccAGCCCAGGAGGAAGTAACCACCAACtcctggagtagagaggaggagaaggaggtgaaagaagaggaggcgaCGCCAAAGGAGGAAGAgcctgaacccgtcacagagccTGAGAAAGCTGAGatggtggaggaagagaagaaagagGAAGACGTTGAAGAAACACAAATAGTACAAGAGAAATGTATTGAATTTGTTGTACCCGCTGCACCACTACAAGAGTGCGGGTTTGAAATATCAATTATGCCCAAGATGGCAGTAGAGGATAAATCTGTTGATGAGATAGCtaagaaagaagaggaagaaaaacAGAAAAAAGAGTTGGAAGAAAAAGAGGCTGCAGCAAAACTCAAGAAAGTGGCTGAGGAAAAGGCTGAAAAAGAAAGGAAAGAAGCTGAAGAGAAAGCTGCAAAACTTaaaaaagaagaggaagagaaagctGCAGAACTtaaaaaagaggaagagaaagctgCAGAACTtaaaaaagaggaagagaaagctgCAGAACTtaaaaaagaggaagagaaagctgCAGAACTTaaaaaagaggaagagaaggcTGTAAAACTGAAGAAAGAGGCTGAAGAAAAAGAAAAAGCTGTAAAACTGAAGAAAGAGGCTGAAGAAAAAGAAAAAGCTGTAAAACTGAAGAAAGAGGCTGAAGAAAAAGAAAAAGCTGCAAAACTCAAGAAAGAAGCTGAAGAGAAAGTAAAAAAATCTAAGCAAGCAGAGGAAAAAAAGAAAGCTGAGGAGGAAAAGTCCAAAAAACGGGAGGCTGCGAAGGTGGAGCTGGAGAAACCGAAGTTAAGATCAGTGAGGAAAGATGAAAAGGAGTCCTCCCTCTCCAAGCAGCAGAACGGCGGTGTGGCGCGCTCCGCCGAGACCGAGGACCAGGAGCGCCTGGAGGCGGAGCGTAAGCTGGAGGAGCTGAAGCGGCGTCGTGACGAGGCGGACAGCGAGGAGTTTGAGAAGATGAAGCAGAAACAGCAGGAGTCTGAGGCCGAGCTGGAGGAGctgaagaagaagagggaggggaggaagaaggtcattgaggaggaagagaagcagaAGAAGGCAGAGCTGGCTGAAAAGAAGGCCAAGGAGCAGgaggagaggaagaggttgaAGGAAGAGATAGAGCAAAGACGAAAAGACGCTgcagagaagaagaaacagaTGATCGAGGAATCGGGCGACGGAGACAAGAAACCCTTCACATTGGGTGTCACGCCCAAGGGCAAGATTGGGGAGAGAGCAGAATTCCTGAACCAGAGAGCCCAGAAAGGCTGTAAGACATCACATGCTCCTATTGTCTCCAAGATAGGCAACAGACTGGACCTATACACTGCTGCAGTTCAGACCAACCGGGATGTGAGGTCTCCTAAGTCTCCGGTCTCAGACCTGCCAGAGACACCAAGCATCCGCAACATCAAGAGCATGTGGGAGAAAGGGAACGTTGGGGGGGCCACTGAAAGTCCCAAGCCTATGAATaagGATGCTGCTGATATTAAAGTGGGTGTGGCTGGACTGACCAAAGGCTGGGGCAAGAGCCCAGCAGACACTGGCAAGGCAGCTGCAGCCGCAGCTGAGAAGGCTGACGACCTGaaacctgttgatgtgggcaacAAGCGCAGCCTATGGGAAACAAAGGGCTCCTCCCCTGCTAAGGTGACAGTTGGAGGCAAGAACAAATCTGTCACAAATGCAGGTGTGGGACGCTAATGATCCAAAGTAAAAACCCTGAGGAAGAAGCCCAAACTGATGAAATACAAGACTCTACTCTGTGTATTCATAACCAAAAATATCTCCATAACAGCCCTGCAGGGGTTGGCACCCAAATTATTTTTCAGTTCTGAACagaaacattattatttttttgttccGTTCCACTGTTCTGACCAGCAAGTTCTGAATCTGTTCGAAACCCCCCAAAATAAATATAgcgttcctttctgttcctttttaaacctctaaaatgtatttttctataTGACTTCACCAATCATTGCGGATAGAGCAGCATGCTATGGAGTGGGCACGCTATAGTTGTTAACATGCattggacagacaagtgtaggTCACGAGATGCGACTACAATTTtgcgggtggggagagagggtggaggaggaggcttggcttgaagtgctgggcatcttgttatgacatgcattttCTGAATTAGACCCACAGAATTATAGCTACGGAGGAGCGGCTTCTatgaaggaactttgaatgtctttgaactttcGAGAATTGGCTTAACGTTGGACTAGAGCTGTTTAGCTAgataacaagcttgtgtgtgctctagtatccttaactagcaatGAAAAAGTGAATCCATTCTTCTCTACTGAAAAATATCTCTCCTTAATTTCTGAATCACGCTTGTAacatcagtaggctacagtagcctatgcttcagagggggaggggcatgtagcctacacacacataaacactggcaaagattttcagctggcaGGCACGCACTGGAATACGTTTTTGAGTGTGGGCTTTGCAGAGGtgctttgttttttgttttttgtggGACTGGAAAACAATCCCCAGAATAtataaaataacattattaaaCAGTTCCCATGCTTGAACAATAAtggttctgttccagaacaggaTACTGTAGATCACTTTAATtcctggttctgattctgttcatCGAAAGATGTCATTATTTTCCGGTCTGTTCCCTGAAACGGTTCCAACCCCTCCAGCCTTTGCACAATCCCTTGTACATCCTCATAGAATTTATGCTGTGAAAATGAAATTTGGAAATAATTTATGTTAGTGTAATGAAAAATattgtatcccccccccccccccccccccccccccccacccccaccttttTGGACTTGACTTAATTTCATTGATAAACAAAAGAAATTCAAAGAATAGATAAgaaaccttaaaaaaaaaaatcaaagttATCCAAAATGTAATGCGTCTTCTGAAGAGATACACTAAGAATTTAATAAGGTATCTATTCAAATAGCCATACTGAACTGAATTTTGTTgtacttttatttttttctatttttcaagAAAGCTTCCATAAGGTTGACATTAGCTGGCAGTCTGATTATATACATGTACTACCTATATGTCAGGATAGATGTTTGTCACATTCATCACTTCGATATCTTTGCTCACAGTGTAATGGTGACGTGATGGTGTCATTGTAGTGCATAATTCACATTATTCAGTCGAACGGGGTATTTTAGTTTTTAGTTATGAATTAGCAGTATCCACTATCACAGCTTTTTTGAGATGTGTTCACATTTTGTATTCCATTTCTGGAAATATCAAAATGAGTATTATGGCATCACAGCTGTTTTTTCCTCTCAAATATACTTTTCGTTGACTGATACTTTGGTCCTGCTTAGCTGGGTTTGGGCTGATAAGACTCTAAATACTTGACTTATTTTATGTTTATGGATGTCAATATTCGGACTGCCACATGGTCACGaggaggctgtcctaatatggacaccgtataCATGTATATTGAATGACATAAACCATGAACTACAACTTATTTCCCAATAAGCACTGGTTGCTAAACTAACCCCCTCAAAATCATTGGATAAATGATGCCCAGGACTGTAGCAAGATTATCAGAGGGTTAATCACTCCTTGGTTGGGCTTAAAGGTCTCAATGTATAATAAGGCTATTGGAATTAAGAACTATCCAGGAAAGGTGTGACCGTTTGACTGAAGTTAACAATCATCCAAAGAGACAGGAGTCATATCACATTGTTTCATGAAGATTTTCACAACTAAGCCAAAGAGACTAGTTTTTTTTAGACCAAAGTTTTAAACAATGAGGAGGCATAGATGCAGTAAAGAGGCCAATGGAACATAGACCATTGGGGGATAGAAGAAGGACACCGGATTGGCGCACGTTCAACAAATCTCAAATCAAATTGGATTGGTCacgtacacgtgtttagcagatgttattgcaggtgtagcgaaatgcttgtaagagctagaagcgaggcagccctctctgtcggcTCCATTTCCTCCCCAATCTGATCTTAACAATGCCAAATCTGTCATGATTTATGTATTGTAACAGGTCCACAATGTCGTTACTAAAGTTCGATTTGGATATATTTGGCTGTTTCATAACATTTAGAAGTAGTCCATTTTCAGGTTTAagaagaagtgactgctaaatgctaacacCCGTTCGTAAAAGctggtagcatagctagcatagAAAAATCGGTGGTGGTAGTCAAAGTCatttttaactgtaatgcagttgattgatGATGATGACATAAATATGTATTGGGGTTGACATCAATACAAGCATTATAcgccatttaatttttttttttttttaacctcagCATAGTTTCAAAAACAcataaacaatagcctaaatgtaggcaCATTTTCCTGGGGGCAATAAAGAGATTCGGGATCTTTCCTCCATGGCTTCTTTCCCCCGTGCGTTTCCATggcatttccattgttttggCCGACTTCTATTGACCTCGTTACCGCATCTATCATTTCAAAACCAAATATGTCAAATGTTCTGGGGATTCTTAAGTATGTCCTCTTTTGTTTACACATTTTCAAGtaattaattgtattttattttttaaaggatTCTTTGCATCATTTTGAAACACCATGGGAAATGTTCCCACAGAGTAACATTAGCTGAGATTTGCACCGTATTGCAAGTTAAGGGGAAAAGTAAAGACCCATCTGTCTATATAGAGTTGACTTTACTGATGTATACCAAAATACAATACTGTACTAGGCATCTAATTAAAATGCAGTTCTTTACTCATTGATGTTTCACTTTGGCATTCTGAGTATGACGTGGTATCGATCTCTGTGAATGCTCCTTTTTCTTTTAAACTTGAGGTAAAGGAGAGTATTGTAAGTAAAGTAAGTCCTAATGTCTATAATattgaactgccttgttcagaggttTTGATTCAAGATTTTCCTTGTCCCCGCTACatcaataaaacaaatgtaaaaagctAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64419 lncRNA downstream 13814 52546065 ~ 52551208 (-) True G57949
TU64421 lncRNA downstream 15793 52547739 ~ 52549229 (-) True G57950
TU64382 lncRNA downstream 24965 52538346 ~ 52540057 (-) True G57917
TU64167 lncRNA downstream 69556 52495173 ~ 52495466 (-) True G57741
TU64156 lncRNA downstream 80795 52483952 ~ 52484227 (-) True G57730
TU64527 lncRNA upstream 82803 52703837 ~ 52755442 (-) True G58040
TU64494 lncRNA upstream 100038 52721072 ~ 52722815 (-) True G58010
TU64537 lncRNA upstream 102728 52723762 ~ 52724121 (-) True G58050
TU64546 lncRNA upstream 113054 52734088 ~ 52739028 (-) True G58059
TU64552 lncRNA upstream 123292 52744326 ~ 52747400 (-) True LOC110524838
XR_005051372.1 mRNA downstream 61259 52499339 ~ 52503763 (-) True LOC118964321
LOC110532407 mRNA downstream 102900 52459257 ~ 52462122 (-) True LOC110532407
XM_036979726.1 mRNA downstream 116722 52333895 ~ 52448300 (-) False LOC110524680
XM_021604682.2 mRNA upstream 3323 52624357 ~ 52636688 (-) False LOC110524766
XM_021604675.2 mRNA upstream 3323 52624357 ~ 52636698 (-) True LOC110524766
XM_021604705.2 mRNA upstream 23915 52644949 ~ 52654488 (-) False LOC110524780
XM_021604701.2 mRNA upstream 24948 52645982 ~ 52654487 (-) False LOC110524780
XM_021604694.2 mRNA upstream 25381 52646415 ~ 52654487 (-) True LOC110524780
TU64168 other downstream 68788 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 817802 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1160679 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1772953 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 518424 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 713690 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 715575 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 804930 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 967388 53588422 ~ 53588770 (-) True G58842

Expression Profile