RNA id: XM_021604761.2


Basic Information

Item Value
RNA id XM_021604761.2
length 8553
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110524838
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52744317 ~ 52753305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAATATACTGAACATTATTAAGAAATGATTATATCTTCACATAAATCGATACCTCCATCTGTGCCGGCTCGAGGTAAAAACAAATTCTAAAATGCTCGTCATCTTGTCTACTCGTAACAGGACATTTCTGCTGATGCGGTAATGTCTTGAAATGGCAAGGGTCCGCTTATTGCCCCTTAATGTATCTCCCCCCTGAATTGCAGCATAATAATTTCTCCTGCTCTAAGCCATTCACACCGAAGTGCCCCACCGCACAAGTGACTGTAGGCTACAGAAGTTGCTCACGATTCTCCGACTCCAGCGTGATTTTACAACGAATGTTAAGCGACGGGATCAAGATGTAGACAAATAAGACATTTAAGTTTACCGATACGAAGGGCTCAGACAGTGATGTCTTGAGTGTTTCAGTCTATACCAGGGCCTGCACAGAGGAAATCTCCAATGTGTTGCGGTGGGGTGCGTTGTAAAGTGTTCATGTTTTAACACATGACAACAAAGCTACGGCAGTCCTGGCTGTCCTAGCGGTTGGATGACTGTGCTGAGTCGCGGACAAGACGCAGaggcagcagcagcagatgCAGCGGAGAGCAGCAATGGTAGAGTCAGCGAGAACCGCAGTGGAGCCGCACTGAGGCAAAGCAAGCTAGCCCCTTATCTGGGGACTAGGACAACACATAGTTGGAGAAAAAGAAGAGGAATTTAGAAGTAAATTGTATCAACCCAAAACCTGAATGCCGCCTGTTCAATCAGATTAACCGGATAACCGGAATTCCAAAACTCCTTGGACCTACAAGATGACCGTTGTGGCAGGAGATAACATGGATGAGACCGCAGCCGTACCGGGGCACCCGCAGGACGCGTACCCCCCCGACCATGAAGACCACGACTGCTGCGAAAGAGTTGTCATCAACATTGCGGGGATGCGGTTCGAGACCCAGCTCAAAACTCTCTCCCAGTTCCCCGAGACATTGTTAGGCAACCCCAAGAAGAGGATGCGCTACTTTGACCACCTGAGAAACGAGTATTTCTTTGACAGAAACCGTCCCAGTTTCGATGCCATCCTCTACTATTACCAGTCCGGGGGTAGGCTGAGAAGGCCCGTCAACGTTCCGTTGGATATGTTCTCTGAAGAGATAAAGTTTTATGAGTTGGGAGTGGATGCCATGGAGAAATTCCGTGAGGATGAGGGCTTCGTCAGGGAGGAAGAACGTCCTTTACCTGAGAAGGAATTCCAGCGTCAGATCTGGCTGCTTTTTGAGCACCCAGAGAGCTCGGGTCCGGCCAGAGGGATTGCTATAGTATCTGTAATGGTAATTCTGATTTCCATAGTCATATTTTGTTTAGAGACTTTACCCGACTTGAAAGAGGACCCTAGGGGTCGTTTTAAGACTGTAGGGAATCATACCTTTTACTACAAACCAAACATCCTAACCGACCCTTTCTTCATTATTGAAACTCTTTGCATTATCTGGTTCTCGTTTGAGTTGTTAGTACGGTTTTTCGCGTGCCCAAGCAAGGCAGTCTTCTCCAAAAACATGATGAACATTATCGATATAGTGGCCATCATCCCTTACTTCATCACACTTGGCACGGAGCTGGCTGAGGACCCCGAAGACCAGGACGAGGGCATGGGGGAGCAGGCGACATCTCTGGCCATCCTCAGGGTAATCAGACTGGTCAGAGTGTTTAGAATCTTTAAGCTGTCACGACACTCCAAAGGATTGCAGATCCTGGGACAGACCCTCAAGGCCAGTATGCGCGAACTCGGATTGCTGATATTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGCGCGGTGTACTTCGCAGAGGCCGAGGAGAAAGGGTCGTACTTCGGCAGCATACCGGAAGCTTTCTGGTGGGCCGTGGTGTCTATGACAACTGTGGGCTATGGGGATATGGTGCCTGTCACTATAGGGGGCAAGATAGTGGGTTCCCTTTGCGCCATTGCTGGTGTGTTGACGATTGCGCTCCCAGTGCCTGTCATTGTGTCCAACTTTAACTACTTCTACCATagggagaccgagggagaggagcaggcccAACTCTTAAACGTTAGTGAACCAAACATTAGTGAAAGCAACTCTAGTCGCCGCAGCTCGTCCACTGTCAGCAAATCAGAATACATGGAAATTGATGGAGATATTAATAATAGCATCGACAATTTTAGAGAGGCAAACCTCAGAACTGGCAATTGCACTCTAGCAAACCAAAACTGTGTAAATAAAAGCAAGCTGCTCACAGATGTGTAGAATCGAATGAGAAAACATGGGACTTACATGATGCCGTCACACGTTGAGTACGCCATCCTTTTTGAATGCTTCATTCGCCTCCTATAAGCGCTCTATGGCATTATGACAACAACCATGCTCACCAATTTGAAAGGAATTATTTGAAAGGGGGAAAAATATGAAAATGAAGCTGTTATTAGAGAACACGACAGCTAGAGTaattcattatttaaaaaatgattatTCAAATAcgtattaaaaaaatataaaaaagaaaCATCAACTTATATTTAACACGCACACGCATAATCGCGCGCCCTTGGAGGACGACCAACCAACACCACTTAGACGACATATCTGTTTTTATCAGACAAAGCCAGGCGTGATAATTAAAACGTTATGCATCGGTACAGATAACATTTCAGCAAGTGCACACTGCATCAAGGATAAAATGCATCATAAATACCATCTGCTGCGAAGAGAGAGACACGCAAGTCAGGATCTGCAGCACCCAGTCAGTGGTCAGGCCGACCGACACCTGGCCTGAAGTCCGAGGCGactcctctacccctctgtcATCAAAGGATCTACTATCCAGCAAAGCACCTTATAGGAAAAATACTGATAACGGAGGATCACTGATCTCCTGGTTTGGATGTTAAAAGGAGGCTGATGATCTACTTGCCTCAGTCTGAAAGACCTACGGACATCCGCAAAGCTGCTATTTTCCAGCAGTAAAATGCTGTAATTATGATATCAGCAAGTGGTACAATGGAATTTTTGCCCGTTAGATGCAAGACAGCACAATGATATAACAGAAGAGCTTCACATGAGCATGTTTAGAAGAGACTCCCCATACATTTTGATATTGGCATGCGTGACGATGAGACATAACCTTATAATAATGctacaaatatatttatttagaattttccATCCCCCTATGCCTTCATTCGATTCCCCTTTATTATTCGTTTTCACTTAGAGTGCAGAACTGGTTTGAAATAGTTTTTGATTTGAAAATTCCTAATTATTTAGCGAGTGAATGTTAAAAAAAATCTTAAGGGAAACAGTAACTAAACGAAGATCATAGCATGAGAAAAAGTCAACTGCATTATGGCCTATCGACTAAGGTACTCTGTATCCTAGTATATCTAAATGCATGACGTCAGTATTCAGCTTGTTGCAATTACAGACACTCTGAAAAGTGTATCATACTGTCATGGAAACGAAACGTGGAAACGTAAAAAAAAATCTCTGAACCGTTTCTGAAAGGTGACAAAATATATCCAAAACCCAACTCGGGGATGCTGACTTTCTCATTTAAAACGTAGGAGATCAAAGAAGCAGAATAAATACTTATTATCCAAATGCATATACTCATAAAGCACCAATTTACAGTATTACTTCAATTGTGCAGTGCATGGACCTTTGAACATAGAAAAAGTAAACCTATTATGAGTCAGGCCTTCCATTTCACCACTAAATTTAGGGATAGGTTTGTTTGTTttcacaaacaaaacaacagaaaCAACTCTCATTTTACTGAAATTAGCTTTTGTTTAATAGATATTGCCAATAATCATTTTGTACATTAGTTGCTAGTGCCTTTACCCCGCTCACCATGCAACAGGCTCAGTGAAAGTgcctctgtgtatatagcctacaaTGGAAATCTATGACAAGTTGAACAGATCAGATGCAAAAGATCTTGCTTGCTTCAGCACTATGATgctgttattattgttgttgatgatgaggatgatgaggattGATTATTCGGATCATTATTAATACAGTCAGAGAATGTTTGGTGAAAACAACCATGGAAGTGCACTACCAACATGATCCATAGTTGAGTTGACCCAAGACTAGAACAATAttccaacacccccccccctagTACTTTATACTTCTCCACCCAAGCACCACTTCAAATCAAAAGTGAATATCCATTGCTTTGCTTTGCTTGTGTTGCGGTTGCAATTGATTTATGTGCCATAAAGTCTTTTAAATGTGTCTACCTCAGTGAGGTCACTGCAGAACTCACTGCAGAGCTGCAAGCCAGGCTATTCTTCGATGCATAAACATGCAACATGGCCTCTAAGTGGAGTAGACTGTGGTCATCAGGGCCTGTGTTTATAAATGGTCTCAGAGTGcttgagtgctgatctaggattaggTCCCccactgtccatgtaatcttattcattatgacctAAAAGActcatctgatcctagatctgtactcctactctgagatgctttatgaatacagacACTGATGTTAAACTCTTAGATTGGCCCCTAAAAGTAGCCTTAGAGAAGCACTTAGGTCTTAGGACAGACATACTGCACCAACCACCCGTACCCCTATCCCATTTTCGTTCCAAGCTACGCAcaatcaaaaaataaaataaacacatcaCGATAGTAGTAGAGTTGACTAGAGCATAGTGATGTAGACTGACTGATTCTCGAAAAACCTGTTGATACAAATGGTTTGGTTTGGATTCTTTAGTATTACAGTTGTTGAGAAGTAAGGCAGGTTTGCTACTGTTAAATCATAGAAATACCCTGGGCAATTTTATCTGCGAATGTCTGAAAGTGTGCCACACTTCATTGATATGTGTATTAATAGAAATAGAATTACTCACATTCATCACagaacattgacttgaatgggaatgtaCATTCTAGCAATTCCATTTCTAAGTGTGTACCTGTCACAGAATGACAATGGAGCAGCCAGGGGCTCTTACACTGATTTTTTTAGCATATTGGAATTTCACTCTGGGCAATATAAGTGCATTATTAGATGCTACACCGTTTTTGCAGGTTCCATTTGCTCAATAGCTACATGTATTGCATAATTGAGTCTTCCAGCTCTCCACAAAGCTTACTGATGCCGTGTGAATCTTGTTTCGTTATTGCAGCAAAATTTGTCCTGTAAGTGTGTGAAATGACCAGATGATTTAGGGTCAAGATATATGTTGCTATGGTAGCGACACAATGTCTGTGACACTGAAGTTGAGGGGTTATACACAAGACAGAAGTTATGAGACCACACGTAAACATGGCTAAAGATTCAAAGGCCCTCATGATGGTATGTCATTTGGTGAAAAGTACTGTACCTTGTTTCCTTTCTCTTTTTCCATTGGCCTTTACTGTATGTATACACCCCTCAACTAAAATGTCTCAGCTAGTGAAGCATTTGCTTTCATCAGTTTGTGCAAAGGCTATACCTTTTGTGGACTAGCAGAAAGCCTCTATGTGCAGATTGGTTATGGACGAGGCCTTTTTTTTGATTCTGTGAATCGAGTTGCTGGTCGTTTTGTGCTATATGTTATCGGCTATGTTCTCTTTATTTGCTCATGGTCGTTCTAGTGTATTGCTGGGGAACTTGGAATGTGTCTGTCTACAACAGGTTTGGTGTCCGTCTATGCGAGAGCCTTCCTAGACGTCAGTTCATTTGACATTATGAGGTGAATATGTCAGTGGAGTTGACATATAAgtgcaaaaaaaaatgttactTCTGTGTCAGGGATTTTTAAGGTTTCTAACCAAGAGAATGCCATCAGGTCTTAAGAACAGACATATAGAATATCCCAAAATACAACAAATAAAAAGTGATTATCCACATCAACCTTATCTATACCATGTACTAGCTGACCATCAGGTAAATGATATAGTTTTACCATATGTGGTTTCTCTTATGGCCCAGAAGTGTGGTTGGACAAAACAGGTTCTATTCCACCAAATACCCATGATGCAACAGTTCAGAGTGAGGTTGAGGGAACACATGCAAAACCCCTCATGTCACGATACCAGTGCATCCATTGCTCTTGCTGTGAGGGCAATCTATGTATGGTGCTATGCATTCAATTAttctacaaaaaaaaacaaaaaaaatgcattcTTATAGTAATGGAATTGCAGTTACCTGTTTCTTAGAAACCTTTGTAAAATAGGAGTTGAACGAATCTATTTTAAAAAAGATGTTGAGGAAAAAGACGATCTCTTGACAAGACATTTACAACAGCGACCatccttttgaacggtagtatagtGTTATTTTTACAGCGACCATCCAATCCCCATCAAACTCAAAGGTTGATCTGGAGTCGTTTTCTAGTTAGGACCCTATGTTGATAAATGGGGCAAAGTAGTCAGTAGCACCCTCCCGGACGGAATTAATAGCCTGAAATGCAATGCACTTACAGCCAGCTGCTGGattgaatggctgtgtgtttagtgtgAACTTAGTGTGAAGGAGAGTCAGAGAAGGTGcctatattgttattttttaataatttttttgCATTCATTTGAAACGCTTTCAGAGATGTATGTTCTTCAGAAGAAAGACGTGTGTGAGAAggtcttttaaaaaatgtaattcagAGAAATGACAACACAAAAACCAAAATATAAGTAAACCATACCTATCTAAAAAAGTAGTAAGAAATCATTTAGCTATAGTAAAATAGAGTATAGCAAGAAAATATATATTGCAAAAGGCCAAAACCAATGATGACTATCTTTTCATTGTGTGTCTTATTTTTTGACTTCTGTGGCAGTGTACTACGATTGCCGGATTGTTTTTAGGAAGAACATGCCATAATATACTGAAATATCAAATACTCTATAATAATGTGTTCCTCTGGCAAGCCATGATAATTAAACTGAAGTAGCCTACTATTATCAATTTATTGTAGGCCTACATTTGAATGATATGGACTACAATCCACTATATTAGCACTATATTAGCATCTGGATATATGGATCGTCTTCTCATTTCATTTCAAGAAATACTGGAAAATTCATCCTAACCAACCACACCATTTAAGAGCGTTTCCAAATGCCCATTACTAAAAACCAACAGATAATGTATAGATAATGTAGACATATCTCAACGGCAACCTACTGATCACAAAAACTGCATGGTCAACGGAAGACTGCATGAGCTTTTCAAAACTGTGGATCAGCTATAATAACAGTTGCATCACTTCAAAGAAAACCCTTGCGTTCATCTACACCAAAGCCTTTTTCAAAAAATATGAAATACCCTCCTTTATTATACATTTCTGGTTTTCTTTTTATTGAAAAACATGATCGTTTGCTTAAGATATTGACAAACACTTTGATCTCGGATCAGGCGTACCTTCTGGTTTTCATCTTGGATCAGGCGTACCTTCTGGTTTTCATCTTGGATCAGGCGTACCTTCTGGTTTTCATCTTGGATCAGGCGTACCTTCTGGTTTTCATCTTGGATCAGGCGTACCTTCTGGTTTTTATCTTGAATCAGGCGTACCTTCTGGTTTTCATCTTGGATCAGGCATACGTTCTGACTATTGACATCCCACCATGTTCAAACTAGCCTGGTCTCAGGTCTGTTTGCGCCGTCTTGCCAACTATTTGGTCGTTGTCAGGCCAAACATGTTTGGCAATTACCAATGACAACAATCATAGGAGTTGGCtgtacagcacaaacagatctttGACCAGGCCATATGTTCAAACCTCACTTTAGTTAGAATGGTGATGAGAGGTGACTAGTTTTTGTTTGATGACAAGGAGTGATATGATGGTAGACGTGTGATTACTACGAGTTTGTCGTCCTGTCCATCCATCAGACACGCTTCGCATccgaaatgacaccctattacttatatagtgcattacttttgacaagAGTAGTGCattaaaaaagtagtgcactaaaaaggCAACAGGGTGTGATTTTGGATTCAACCATTGTGCATCTACATGTATATAGGAATGACATCCTATAGAAAACCTATAAGAACCTATGGAAATGTGACCAAGTGCATTGTATTTAGGGAAGCTGGCTTGCTTTGGAGCGAGCAGCTCAGCGGCACGAGGGACTGTTGACTCCTGGGGTCTGTTCAGGAGGGTGCAACGTTACAAgacattcagatagaaatgtattgtgcAGATGAGATATGACCATCTGTCATGTAGAACAGTGAGTCATGTCAGCTATACCCATTACATGTCTAACTGCAACATTCTCAATGTTTCACGTCGCTGAATAAACCCATGCTCTTTTTTATTATAAGTAGTCCATTTGCCGACTGAACATTGCAAATGTGTTCTTTTATGTTTGATCGTCATTATTCATGTTTTGTTTTACGAGGATTATGCTACGATACGCTCAGTTTGTCAGACGTCTGACAAAGGCATCGTCTGTGATCTATGCAAGGGTATTTCTTTTCTTACTTATGTCACACCTCATGATTTCATCGTACATCAAATACAATAAATTTTTAAGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64546 lncRNA downstream 5289 52734088 ~ 52739028 (-) True G58059
TU64537 lncRNA downstream 20196 52723762 ~ 52724121 (-) True G58050
TU64494 lncRNA downstream 21502 52721072 ~ 52722815 (-) True G58010
TU64419 lncRNA downstream 193109 52546065 ~ 52551208 (-) True G57949
TU64421 lncRNA downstream 195088 52547739 ~ 52549229 (-) True G57950
TU64570 lncRNA upstream 25982 52779287 ~ 52783498 (-) True G58080
TU64629 lncRNA upstream 111059 52864364 ~ 52864565 (-) True G58138
TU64632 lncRNA upstream 112109 52865414 ~ 52865614 (-) True G58141
TU64997 lncRNA upstream 134234 52887539 ~ 52889793 (-) True G58458
TU65014 lncRNA upstream 159355 52912660 ~ 52915682 (-) True G58475
XR_005051375.1 mRNA downstream 61704 52681889 ~ 52682613 (-) True LOC118964326
XM_021604705.2 mRNA downstream 89829 52644949 ~ 52654488 (-) False LOC110524780
XM_021604701.2 mRNA downstream 89830 52645982 ~ 52654487 (-) False LOC110524780
XM_021604694.2 mRNA downstream 89830 52646415 ~ 52654487 (-) True LOC110524780
XM_021604675.2 mRNA downstream 107619 52624357 ~ 52636698 (-) True LOC110524766
XM_021604776.2 mRNA upstream 13177 52766482 ~ 52769164 (-) False LOC110524843
XM_036979844.1 mRNA upstream 13177 52766482 ~ 52769164 (-) False LOC110524843
XM_036979852.1 mRNA upstream 13177 52766482 ~ 52769164 (-) False LOC110524843
XM_036979858.1 mRNA upstream 13177 52766482 ~ 52769164 (-) False LOC110524843
XM_036979861.1 mRNA upstream 13177 52766482 ~ 52769164 (-) False LOC110524843
TU64168 other downstream 248083 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 997097 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1339974 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1952248 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 386153 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 581419 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 583304 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 672659 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 835117 53588422 ~ 53588770 (-) True G58842

Expression Profile