RNA id: XM_021604776.2


Basic Information

Item Value
RNA id XM_021604776.2
length 2548
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110524843
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52766482 ~ 52769164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGCCAATACTGTAGACAGCCAACGGTAGCAAGTAGACAGACTGGAGAGTATTTCAGGACCGTCTGCAACTACAAAAAGTTTATTGATTTAAATGGGGGAAACCAACAAGAAAACTTTTACTGGGCAGAAAAAAAACATATGGTGGAGTAATTAATCATACCATTTGGGAGGCTGGAGTGATACAGTGAGGATTTACTTGGATTCATTAcccaaagaaagagagggagaaaaagaaagaaagaaaaactaCCGAGAGAAAGTGACAGTGGGGGCCGTGGAGGTGAGTGAAGCGCTCACCCTTGAGAGGGGCAAAAGATGACTGTTGTATCCCGTGAGAACCAGGACGAGACTGTGGTAGTCCCTCCCTTGTACCAAGATGATTGCGACGTGGAGCGGGGCGACCAGGAGTGCAGCGAGAGGGTCGTCATCAACATCTCCGGGCTGCGCTTCGAAACTCAACTGAAGACCCTCTCGCGCTTTCCCTCTACGCTATTGGGAGACCCACGTAAAAGGATGCGCTTCTTCGATCCGTTGAGAAATGAGTACTTTTTCGACAGGAATAGACCCAGCTTTGATGCCATCCTTTATTATTACCAGTCCGGGGGAAGGCTTAGGAGACCTGTCAACGTTACCATGGACATTTTCATGGAAGAAATCAAATTTTATGAAATCGAAGAGGAGGTCATAGAGATGTTCAAAGAAGATGAAGGTATGATCAGAGAGGTGGAACGTCCGATGCCTGACAACGAGTTTCAGCGCCAGATGTGGTTGTTGTTTGAGTACCCCGACAGCTCGGGGCCTGCCCGGATGATCGCTGTTGTATCAGTCAGTGTGATTTTGATATCCATACTGATCTTCTGTTTGGAGACATTGCCACGGTTCAGGGAAGATCACAGCACAGACATAGAACTCAGTAATCACCTCATCACGAATGGGACTACtcgccacaaaaaaaaaaatccgtTGACAGACCCGTTTTTTATGGTTGAGTCACTTTGCATCGTGTGGTTTTCCTTTGAATTTCTCATGAGGTTTTTATCGTGCCCTAGCAAACCGGCTTTCTTCAAAAACGCAATGAACGTCATTGACATATTAGCGATTGCTCCTTATTTCATCACCCTTGGACTTGAACTCGCTGAGCTACAGGGAGCGGGAAGCGAGCAGGCCATGTCGTTAGCCATACTCAGAGTAATCCGTTTGGTTCGAGTCTTCAGGATTTTCAAACTTTCCAGGCACTCCAAGGGTCTCCAAATCTTGGGCCAGACACTCAACGCCAGCATCAGCGAACTAGGTCTTTTGATATTCTTTCTTCTCATAGGGGTTATTCTGTTCTCCAGCGCTGCTTACTTTGCAGAGACAGACGACCCTGAATCGGGATTCACGAGTATCCCCGCAGCATTTTGGTGGGCGGTGGTGTCCATGACTACGGTTGGATACGGAGACATGTGCCCAGTTACTATTGGCGGCAAAATAGTGGGATCGATGTGTGCCATCGCCGGAGTGCTAACCATAGCCCTACCTGTCCCTGTCATCGTTTCCAATTTTAATTACTTCTATCACAGAGAACGCAATGATGAGGACACCGCCGTGTATACTCACGTGACTTGTGGTCAACAGAATACTTCATTTGGCGAATTCAAATCGACCAGCGACAGCAAACAGTCCCTCGCCAAATCAGAGTACATTGAAGATGATTCTCTCGAGACACTCAGATTTACTAACTTTAGCCCATTTGAACATTACACTGGCAAGCTGACAGATGTATGAAAAAACAAGCAACGCCCTAGCTGGGCAGAAAAAAACGATATCGGTGAGTAGCCAGCCTGAGTACATTTACGGGCGCTTTTACGCAAGCAGTTAGTTGGCATGCAATCTCTCAATAACTTGAATTCATTTGTTGAATACCTTCAGTTGGCCTAATGCTTCATAACAGTAATGTCAGGTCAGTGTCCGGCCTATGCGCATGTTTGAATAACTACACGCAGTTTTACCCACCCTATTACGCACGGTGTTTGTTGGCATATAATCTTAAAATAGCTGGAATGAATTTGTTTGAGACCTTCAGTAGGCCTGAAACTGTATTACAGGTCAGTAGCGTACAGTGTTGAGTGGCTACAACAACTTCTAAAACTGGGTTGCTTTTGGAGAGTTTATAGAATTTCTGAACTCGGAGCGCCACTGTGTGGTTGAAACGCAATCGCGCAGCAGACGCTTCTCAGGTAAAACATTCAAGCAGCTGTTTACGTTACGTGTGCAAGACGTTGCTGATGATGTAAGTGTGTGTATAATTTACTTGTGACTGTGTATACATTTTCCATTAAAAAAAGTTTTTTAGGGACATTTTAGACAGAAGTGATGGAATGtcaccacacacaaaaaaacatgatcTTCTTTTTACTTCCAGGGGACAAGATCAAAAACCACTGCCTTTCTACTCCACTTGAAAATAAATGCTGATGGGACAAGATCAAAGACCATTGCGTTTCTGCTCCGCTTGAAAGGAAATGCAGGCATGGCTTTTCCAAATCTAGATGTACTTGTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64527 lncRNA downstream 11040 52703837 ~ 52755442 (-) True G58040
TU64552 lncRNA downstream 19082 52744326 ~ 52747400 (-) True LOC110524838
TU64546 lncRNA downstream 27454 52734088 ~ 52739028 (-) True G58059
TU64537 lncRNA downstream 42361 52723762 ~ 52724121 (-) True G58050
TU64494 lncRNA downstream 43667 52721072 ~ 52722815 (-) True G58010
TU64570 lncRNA upstream 10123 52779287 ~ 52783498 (-) True G58080
TU64629 lncRNA upstream 95200 52864364 ~ 52864565 (-) True G58138
TU64632 lncRNA upstream 96250 52865414 ~ 52865614 (-) True G58141
TU64997 lncRNA upstream 118375 52887539 ~ 52889793 (-) True G58458
TU65014 lncRNA upstream 143496 52912660 ~ 52915682 (-) True G58475
XM_021604761.2 mRNA downstream 13177 52744317 ~ 52753305 (-) False LOC110524838
XR_005051375.1 mRNA downstream 83869 52681889 ~ 52682613 (-) True LOC118964326
XM_021604705.2 mRNA downstream 111994 52644949 ~ 52654488 (-) False LOC110524780
XM_021604701.2 mRNA downstream 111995 52645982 ~ 52654487 (-) False LOC110524780
XM_021604694.2 mRNA downstream 111995 52646415 ~ 52654487 (-) True LOC110524780
XM_036989674.1 mRNA upstream 41685 52810849 ~ 52815285 (-) True LOC110532414
XM_021598564.2 mRNA upstream 46997 52816161 ~ 52818942 (-) True LOC110521107
XM_036979943.1 mRNA upstream 174696 52943860 ~ 52947619 (-) False LOC110524896
XM_021604861.2 mRNA upstream 174696 52943860 ~ 52955716 (-) True LOC110524896
XR_005052075.1 mRNA upstream 240804 53009968 ~ 53020119 (-) False LOC118964864
TU64168 other downstream 270248 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1019262 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1362139 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1974413 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 370294 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 565560 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 567445 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 656800 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 819258 53588422 ~ 53588770 (-) True G58842

Expression Profile