RNA id: XM_021604861.2


Basic Information

Item Value
RNA id XM_021604861.2
length 1645
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110524896
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52943860 ~ 52955716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacatccccccatATCTTGACTTTTTAATCACAACTAAATCTCTACGCAGCACCGCGCAGAACTGTTTCCCGTGAACGTGTCATTTGAGCGTGAATGCATGAATCACGAAGAAGACGTGGCGCCAGCTTTTCCTCTGCTTCAACAAGCTACCGCTATCTAACGATTATTGAATGAGCACAAGTGATTTTCCAATCGCTACCCTTCCCGACAAAAATGATTTCTCTAACAGATTCACAGAAAATCGGGATGGGGTTGACAGGCTTTGGCGTGTTCTTCCTCTtctttgggatgatcctgttttTTGACAAAGCTCTTCTTGCCAttggaaatatatTGTTTGTAGCAGGCCTGTCCTTTGTCATCGGCTTGGAGCGTACCTTCAAATTCTTCTTCCAGAGACACAAATTTAAAGCCACAAGTTTCTTCCTGGGAGGGGTGCTGGTGGTTCTGATTGGCTGGCCTATCATTGGAGTGGTGCTGGAGATCTATGGATTCTTCCTCTTATTCAGGGGCTTCTTCCCAGTGGCAGTAGGCTTCATCAGGAGGTTGCCTGTCCTCGGGTCCATACTGAACCTCCCAGTGATTAGTGGATTTGTGGACAAAGTCGGCGAGAGCAACAATATGGTATAACAGTGAACATCTTTGGATTGGAGGATATGAAATGGCTTTACTCTATTTATAATAGTTTATATTGGTGACTTTTCTCTACTGGTCAACTACTGGCCAAGACTACCCCCATGTTAAAGGTCAAAGCTGTGAATCAGAAACCTCTTTCTGTTCAAAGGAAAACAATGTTTCTTTGGGCAGGCATATGAATACAACTGGTATCGTAAAGTTTCCTTTGACGGAAATGGTCTCATAACCTGGTTGCCATCGATGGACAATTGTTACCAAGGGACTACTTTATTTCAAGGCCCAATGGGTGAATTGGGCCCTTTTTGTGTCACTACCCGTTCCTGATCGACTGATTATGATGATTGACGTGACTGAACCAACCACTGGATTGGACATCGCTAAGGAGGAGAAGTCTTGAATCTGTTACAGCAGTCTTTCTTCTAGAATGTTGTTCTGGAATGTTGTCTGTACAGTCAGAGAAGTGTTTTGGTTACCTTGATGAAGAGTTTCTGGAATTTTTGTATGGCTGTTTAGAGTTGTGTTACACCTGGGTACTGTTCAGGAGGATGTAGCTTTACAGAACATTCCGATATTGTGTAGAACAGATATGATTGTCAGATAGTGAATTATGTCAGCTGTATTTACtccatttctatctgcaatgttcaGAATGTTTTGCATCATTAAATACTAAGCTGTTGAAGATGAATTGCCCTGTGCGCACAACGGGTCACAAATGGGTACATTCATTTAAGCTAGTCCAGGACACTAGGTGAGTTGAATTTACACAATTTAAACTATTCCTTCCTAAAGTGAAAATGTCCACCCACCTGGGGCACTGGGCGAGCTAAAACGAATGCAtccaatgctacagatgtctccaCAACCCAGATATTGATGGTCTCACAGCAGCTGGGGTTTGTCACTTTCTACTTAATGTATTAAGAGGTCTGTCAGAGAGAAGTTTTACTCAAATGTATCTTTTGTAAATACATACTTGaaatagtgtgttttaaaaacaaa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65024 lncRNA downstream 2396 52941223 ~ 52941464 (-) True G58485
TU65018 lncRNA downstream 17309 52926223 ~ 52926551 (-) True G58479
TU65008 lncRNA downstream 18387 52924832 ~ 52925473 (-) True G58469
TU65014 lncRNA downstream 28178 52912660 ~ 52915682 (-) True G58475
TU64997 lncRNA downstream 54067 52887539 ~ 52889793 (-) True G58458
TU65057 lncRNA upstream 51767 53007483 ~ 53020103 (-) False LOC118964864
TU65058 lncRNA upstream 54646 53010362 ~ 53020103 (-) True LOC118964864
TU65068 lncRNA upstream 72639 53028355 ~ 53028714 (-) True G58518
TU65069 lncRNA upstream 74862 53030578 ~ 53032021 (-) True G58519
TU65073 lncRNA upstream 91876 53047592 ~ 53047671 (-) True G58523
XM_021598564.2 mRNA downstream 124918 52816161 ~ 52818942 (-) True LOC110521107
XM_036989674.1 mRNA downstream 128575 52810849 ~ 52815285 (-) True LOC110532414
XM_036979879.1 mRNA downstream 174696 52766482 ~ 52769164 (-) False LOC110524843
XR_005052075.1 mRNA upstream 54252 53009968 ~ 53020119 (-) False LOC118964864
XM_021604901.2 mRNA upstream 92024 53047740 ~ 53059946 (-) True LOC110524937
XR_005052089.1 mRNA upstream 121942 53077658 ~ 53084723 (-) True LOC110524998
XM_036989682.1 mRNA upstream 282619 53238335 ~ 53250903 (-) True ucmab
XM_021604995.2 mRNA upstream 342647 53298363 ~ 53310120 (-) False LOC110525034
TU64168 other downstream 447626 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1196640 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1539517 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 2151791 50777747 ~ 50792069 (-) False LOC110524514
TU65118 other upstream 183742 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 379008 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 380893 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 470248 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 632706 53588422 ~ 53588770 (-) True G58842

Expression Profile