Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021604990.2 |
| length | 2343 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 5 |
| gene id | LOC110525034 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 53298363 ~ 53310125 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09430 | ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2) |
53,298,000
53,300,000
53,302,000
53,304,000
53,306,000
53,308,000
53,310,000
53,310,000
53,312,000
53,314,000
53,316,000
53,318,000
53,320,000
53,322,000
NC_048565.1
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65219 | lncRNA | downstream | 2918 | 53295248 ~ 53296349 (-) | True | G58659 |
| TU65154 | lncRNA | downstream | 93952 | 53204782 ~ 53205315 (-) | True | G58596 |
| TU65073 | lncRNA | downstream | 251596 | 53047592 ~ 53047671 (-) | True | G58523 |
| TU65069 | lncRNA | downstream | 267246 | 53030578 ~ 53032021 (-) | True | G58519 |
| TU65068 | lncRNA | downstream | 270553 | 53028355 ~ 53028714 (-) | True | G58518 |
| TU65234 | lncRNA | upstream | 35608 | 53345733 ~ 53347979 (-) | True | G58672 |
| TU65173 | lncRNA | upstream | 74492 | 53384617 ~ 53386535 (-) | True | G58613 |
| TU65256 | lncRNA | upstream | 83823 | 53393948 ~ 53400122 (-) | False | G58694 |
| TU65257 | lncRNA | upstream | 83823 | 53393948 ~ 53394983 (-) | True | G58694 |
| TU65284 | lncRNA | upstream | 113473 | 53423598 ~ 53423861 (-) | True | G58717 |
| XM_036989682.1 | mRNA | downstream | 48364 | 53238335 ~ 53250903 (-) | True | ucmab |
| XR_005052089.1 | mRNA | downstream | 214544 | 53077658 ~ 53084723 (-) | True | LOC110524998 |
| XM_021604901.2 | mRNA | downstream | 239321 | 53047740 ~ 53059946 (-) | True | LOC110524937 |
| XR_005052075.1 | mRNA | downstream | 279148 | 53009968 ~ 53020119 (-) | False | LOC118964864 |
| XM_021604861.2 | mRNA | downstream | 343551 | 52943860 ~ 52955716 (-) | True | LOC110524896 |
| XM_021605028.2 | mRNA | upstream | 26905 | 53337030 ~ 53338484 (-) | False | LOC110525078 |
| XM_021605039.2 | mRNA | upstream | 63576 | 53373701 ~ 53384476 (-) | True | LOC110525089 |
| XM_021605237.2 | mRNA | upstream | 403588 | 53713713 ~ 53758738 (-) | True | LOC110525255 |
| XM_036980325.1 | mRNA | upstream | 451487 | 53761612 ~ 53769097 (-) | False | LOC110525178 |
| XM_036980313.1 | mRNA | upstream | 451487 | 53761612 ~ 53774543 (-) | False | LOC110525178 |
| TU65118 | other | downstream | 158963 | 53139458 ~ 53140304 (-) | True | G58565 |
| TU64168 | other | downstream | 803033 | 52495898 ~ 52496234 (-) | True | G57742 |
| TU63128 | other | downstream | 1552047 | 51746617 ~ 51747220 (-) | True | G56764 |
| TU62721 | other | downstream | 1894924 | 51400727 ~ 51404343 (-) | False | G56372 |
| TU61958 | other | downstream | 2515423 | 50777747 ~ 50783844 (-) | True | LOC110524514 |
| TU65226 | other | upstream | 24599 | 53334724 ~ 53338387 (-) | False | LOC110525078 |
| TU65227 | other | upstream | 26484 | 53336609 ~ 53338387 (-) | True | LOC110525078 |
| TU65285 | other | upstream | 115839 | 53425964 ~ 53426316 (-) | True | G58718 |
| TU65415 | other | upstream | 278297 | 53588422 ~ 53588770 (-) | True | G58842 |
| TU65542 | other | upstream | 451830 | 53761955 ~ 53762896 (-) | True | LOC110525178 |
