RNA id: XM_021604990.2


Basic Information

Item Value
RNA id XM_021604990.2
length 2343
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC110525034
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53298363 ~ 53310125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaggggagtaAAGCGTATTTACACAGACGGTGAACCGCCTGGGGAATCGTAGGGGAGAGGAAGTCGGCCggctctctgtctgcctgctccAACttcctgcaaaaaaaaaaaaaaaaaagccaggaTCTTATTTCAGTCCAGCAGAGCTGTGTAGCCTAGCTAGACGACAGTCAGCATGGAAAAACAAGGGATCATACCAATTTAATCATAAAAGTTTtgcaaggaggggaaggaaaggcAAACAAGGTATCGCAGGTATGGACAGCGCCATCACGTTGTGGCAGTTCCTGCTGCAACTTCTCCTGGACCAGAGCCACAAGCACCTGATCTGCTGGACATCCACTGACGGGGAGTTCAAACTGCTCAAGTCAGAGGAGGTGGCCAAGCTGTGGGGGCTCCGCAAGAACAAGACTAATATGAACTACGACAAGCTGAGCAGAGCACTGAGATACTACTATGACAAGAACATCATCAAGAAAGTGATCGGCCAGAAGTTTGTCTACAAGTTTGTCTCGTTCCCGGAGATCCTGAAGATGGACCCTGCGGTGGTAGAGATGGGCTTGACGTCCGGCATGGTGACCCTCCATGAGGATGACGTCCAGGACATAGacgtagaggaggaagaggaggaggcacAGCAGCAGAGAAGAGCCGTGGGGGCAGCGTTGGGGGCGGCTGCTGCGGCTCAGCAGGCTGCGTGTCGTAACGACTACCTCcgctctggtctctactcctccttcAGCGTCAgctccctccatcatcctccagaGGAGCTGCTCAGAGCCTtgagggagaggcaggagagacagcaggatgaAGCCCGGTCCGGAGTCATCCGCTTCGGGGCTGGTACCACAGAGAGAACTCCACCCTCACCCTCCCACATCAAGCCTTCATCACAATCCTTCAGCATCCACAGTCCATCTAaaccctcccccctccaccaccatcaccaccggcGCTCCCCGTCCTCCTCCCCACCCAGCCCTAACCCCCAGCCGGGACCAGGGCGAGGAGGCTGGAGCCCAGaggctgaagaggaggagggggaggactcTGACCAGGGGGCCCAGCCCTTGAATCTCTCCtctgggcacagagagagagagagggctctgCAGCCTCCGGAGAAGAGGAccagtggtggtagtaggggtagtgGTAGTAGTCATGGATACAGGGAACATGGACTCCCACCCAAAACAAAGAAGCCCAAAGCCCTAGAGATTCCTGCCCCCTCCCTGCTCCTGACAGGAAGTGACATTGGCTCCATAGCCCTTAACAGTCCCGCCCTGCCGTCCGGGTCCCTCACCCCGGCCTTCTTCACTGCACAGACTCCGTCTGGCCTGCTGCTGGCTCACAGCCCTCTGTTATCAGGCATCCACTTCTGGAGCAGTCTTAGTCCCATAGCCCCTCTGAGCCCTGCACGGCTCCAAGGACACGGATCTCTGTTCCAGTCAGTATACCTCAGTCCAGCGGTTCCGGAGGTGTCCCGTTTCAGGACCCTGCaaatgcagagagggagaggatatcctgtgaatacttcctgtttgagccCAAGGGAGCCGAGGCAGACTGAACAGTGTGGACAGGTTTCTGAGGGGGCGGATCCTGGACTGCATCCAAAATGGAACCCTATCCTCTGTATAGTATGCTACTTTTgaacaaaagtagtgcattatgtagggaagtGTGCCGTTTGGGACGTAGACCTGCTCCTCATTTGTGCATCTAGGCTGCTAGCTAGCCCCCTCTGCTCCCatcaacacacgcacgcacacaagcctaagtggCCTCTTTATGTACAATGCACTCACTTCTCCCTCCATACAGCCTGTTGTGGTAGAAACGATCAGAAAGGAGTGagaaggaagggaaggaaggaagaggcaCATAAGAACAACAGGAAAGCGGGAAACTGGGCCAGTGACAACACTACAGTTCCTCTCGTGATAGGAGCATTGGCAGAGAGACCTGGCAAAGGCTTCTGCGAAGTGAAAAAAATGGTGAATTTGTTGGAAGGGATAAAGCACTCGAGGGCAGCATTAAATACAGTGTACACGCCTCTTTTTTCTTCATCCACACTTCTGTTTGCCAAGCACTAGTTTTAGAAAGTTTGGGATGTACAGCATACTGACACTGCAGTAGCATTGGCTGAACCTCCACCTcgcccccccccccgctctctctctccacagtttcCCAGTCTAATGAATGGACACCTCCCTGTCCCCTTGCCAAACCTGGATGGGTCCCCCTCCCCCCTGCTCCTGTCCCCTGCCAATCACAAGTCCTGATTCAGACTCTCAAAACCCAAACCAGCCTGTTGGTTCTACTTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65219 lncRNA downstream 2918 53295248 ~ 53296349 (-) True G58659
TU65154 lncRNA downstream 93952 53204782 ~ 53205315 (-) True G58596
TU65073 lncRNA downstream 251596 53047592 ~ 53047671 (-) True G58523
TU65069 lncRNA downstream 267246 53030578 ~ 53032021 (-) True G58519
TU65068 lncRNA downstream 270553 53028355 ~ 53028714 (-) True G58518
TU65234 lncRNA upstream 35608 53345733 ~ 53347979 (-) True G58672
TU65173 lncRNA upstream 74492 53384617 ~ 53386535 (-) True G58613
TU65256 lncRNA upstream 83823 53393948 ~ 53400122 (-) False G58694
TU65257 lncRNA upstream 83823 53393948 ~ 53394983 (-) True G58694
TU65284 lncRNA upstream 113473 53423598 ~ 53423861 (-) True G58717
XM_036989682.1 mRNA downstream 48364 53238335 ~ 53250903 (-) True ucmab
XR_005052089.1 mRNA downstream 214544 53077658 ~ 53084723 (-) True LOC110524998
XM_021604901.2 mRNA downstream 239321 53047740 ~ 53059946 (-) True LOC110524937
XR_005052075.1 mRNA downstream 279148 53009968 ~ 53020119 (-) False LOC118964864
XM_021604861.2 mRNA downstream 343551 52943860 ~ 52955716 (-) True LOC110524896
XM_021605028.2 mRNA upstream 26905 53337030 ~ 53338484 (-) False LOC110525078
XM_021605039.2 mRNA upstream 63576 53373701 ~ 53384476 (-) True LOC110525089
XM_021605237.2 mRNA upstream 403588 53713713 ~ 53758738 (-) True LOC110525255
XM_036980325.1 mRNA upstream 451487 53761612 ~ 53769097 (-) False LOC110525178
XM_036980313.1 mRNA upstream 451487 53761612 ~ 53774543 (-) False LOC110525178
TU65118 other downstream 158963 53139458 ~ 53140304 (-) True G58565
TU64168 other downstream 803033 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1552047 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1894924 51400727 ~ 51404343 (-) False G56372
TU61958 other downstream 2515423 50777747 ~ 50783844 (-) True LOC110524514
TU65226 other upstream 24599 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 26484 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 115839 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 278297 53588422 ~ 53588770 (-) True G58842
TU65542 other upstream 451830 53761955 ~ 53762896 (-) True LOC110525178

Expression Profile