RNA id: XM_021605028.2


Basic Information

Item Value
RNA id XM_021605028.2
length 645
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110525078
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53334724 ~ 53338484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagatgaagaagaagaatgtacactccagtccagttggtggcagTAGTGCACCttttggttgccaaccgccattttttttaaacataagaGTTCACCATTACTTCCTGCAACCAACAACAGCGTGTAGTTTTCGTTGGAGCTCATACAAAATCAAAATGAGTTTACCGCTGAATCCCAAACCGTTTCTGAATGGTCTTACTGGTAAGCCCGTGATGGTGAAGCTGAAGTGGGGTATGGAATACAAGGGATACCTGGTGTCCGTGGACAGCTACATGAACATGCAGTTGGCCAACACTGAAGAGTATGTAGATGGAGCGTTGGCTGGACACCTAGGAGAGGTGCTTGTCAGATGCAACAATGTCTTGTTCATAAGAGGagtagaagaggaagaagaagatgggGAAATGAAAGATGCTTGAAAGCTGAATGCTTCAgcaggcttcttctactttctttagtttatattttttttcatccGGTCGCTAATCTTGTTCACTGGATTAGTCCTCATTTTTTAATGAAAAACATCTTGTTGTGAAAACAgttatgtatttttttatatgatgatgatgatgaaccaAGCTGTTGTGCCCCTCATGGCACAAGGATAATAAAATTGTGCATATTGCACTTTTCAATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65219 lncRNA downstream 40681 53295248 ~ 53296349 (-) True G58659
TU65154 lncRNA downstream 131715 53204782 ~ 53205315 (-) True G58596
TU65073 lncRNA downstream 289359 53047592 ~ 53047671 (-) True G58523
TU65069 lncRNA downstream 305009 53030578 ~ 53032021 (-) True G58519
TU65068 lncRNA downstream 308316 53028355 ~ 53028714 (-) True G58518
TU65234 lncRNA upstream 7249 53345733 ~ 53347979 (-) True G58672
TU65173 lncRNA upstream 46133 53384617 ~ 53386535 (-) True G58613
TU65256 lncRNA upstream 55464 53393948 ~ 53400122 (-) False G58694
TU65257 lncRNA upstream 55464 53393948 ~ 53394983 (-) True G58694
TU65284 lncRNA upstream 85114 53423598 ~ 53423861 (-) True G58717
XM_021604990.2 mRNA downstream 26905 53299267 ~ 53310125 (-) True LOC110525034
XM_021605000.2 mRNA downstream 26909 53299267 ~ 53310121 (-) False LOC110525034
XM_021604995.2 mRNA downstream 26910 53298363 ~ 53310120 (-) False LOC110525034
XM_021605006.2 mRNA downstream 32668 53299267 ~ 53304362 (-) False LOC110525034
XM_036989682.1 mRNA downstream 86127 53238335 ~ 53250903 (-) True ucmab
XM_021605039.2 mRNA upstream 35217 53373701 ~ 53384476 (-) True LOC110525089
XM_021605237.2 mRNA upstream 375229 53713713 ~ 53758738 (-) True LOC110525255
XM_036980325.1 mRNA upstream 423128 53761612 ~ 53769097 (-) False LOC110525178
XM_036980313.1 mRNA upstream 423128 53761612 ~ 53774543 (-) False LOC110525178
XM_036980320.1 mRNA upstream 423128 53761612 ~ 53774544 (-) False LOC110525178
TU65118 other downstream 196726 53139458 ~ 53140304 (-) True G58565
TU64168 other downstream 840796 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1589810 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 1932687 51400727 ~ 51404343 (-) False G56372
TU61958 other downstream 2553186 50777747 ~ 50783844 (-) True LOC110524514
TU65285 other upstream 87480 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 249938 53588422 ~ 53588770 (-) True G58842
TU65542 other upstream 423471 53761955 ~ 53762896 (-) True LOC110525178
TU65545 other upstream 453346 53791830 ~ 53797014 (-) True G58958
TU66641 other upstream 1390647 54729131 ~ 54737244 (-) True G59978

Expression Profile