RNA id: XM_021605039.2


Basic Information

Item Value
RNA id XM_021605039.2
length 2150
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110525089
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53373701 ~ 53384476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTTAGTGACAAGAAAAGAGTGTAGGCTAGTATATAAATGCGGTTTGGGAAGTCTGAATCATTAATGGCTCAGCTGCCTCTACCGGGGCAGGCAGGCTATCCCTTGAGCACAGCCAGCCACAGGCTGCAGCTGATGACTGTTTCAGAATATGTCCACTGGAGGCTCCCAGCAGTTCATGCGTCACTTCATTCCTGCCGCTGATCATGGCGGAGCTCGAGACAATGCAGTCTGAACTGGAGGCGCCCGAAGTTCTCAATGGGGACGCCGGCGAGAACGATGAGAAAGAGTACGAGGAGCCCTCGGAATCAGGGaagaaaaagagaagaaaaaagaaaaagaataAGACTGCTGCTCCAGCAGGGACAAATGAGGCTGAGGGGGATGGAGATACCGGAGGAGGTGTTGGTGATGTGACGAAACAGTTGGAGCAGCAAGCTCTGCTGGAGGACAAAGAGAAGGAGGACGATGGAGTGGATGATGGAGAAGATGTTGAGAACTCAGCagggaaaaagaagaagaagaagaagaagaagaaaggagTGAAGGGACAGACtgaccctccctccatccctatttGTGAGCTGTATCCCAGTGGAGACTTCCCAAAAGGAGAGGAGTGTGAATATCCCCCATCTAAAGACGGGCGCAGTGCAGCGTGGAGGACCACCCACGAGGAGAAGAGGGTCCTAGACAAGGCTAACGAGGAGATGTGGAATGACTTCCGTCAGGCTGCCGAGGCCCACAGACAGGTCCGAAACTACGTCAATACCTGGATCAAACCTGGGATGACCATGATTGACATCTGTGAGCGGTTGGAGGGTTGTAGTAGGAGGCTAATCAAGGAGAATGGTCTGAAGGCTGGCCTGGCATTCCCCACTGGCTGCTCCATCAACCACGTTGCTGCCCACTACACACCCAACGCTGGAGAccccacagtactgcagtatgaCGACGTCTGCAAGATAGACTTTGGCACGCACATCAACGGTCGAAtcattgactgtgcctttaccgTGACCTTCAACCCAAAGTATGACAGACTACTGGAGGCTGTGAGAGATGCTACCAACACAGGCATCAAGTGTGCAGGGATAGATGTGCGTCTATGTGACGTGGGTGAAACCATCCAGGAGGTCATGGAGTCTTATGAGGTGGAGATAGATGGGAAAACATACCAAGTAAAGCCAATCAGGAACCTCAATGGCCACTCCATCGGACAGTACAGGATACACGCAGGCAAGACTGTTCCCATCGTCAAGGGAGGAGAAGCTACCAGGATGGAGGAAGGTGAGGTGTACGCAATCGAGACATTTGGCAGCACAGGAAGGGGAGCGGTTCACGATGACATGGAGTGCTCACATTACATGAAGAACTTCAATGTTGGACACGTGCCAATAAGACTTCCCAGGGCCAAGCATCTGCTAAACGTGATCAATGAGAACTTCGGGACATTGGCGTTCTGCCGCCGCTGGTTGGACCGGCAGGGAGAGAGCAAGTACTTGATGGCCCTGAAGAACCTGTGTGACCTGGGTATCATAGACCCGTACCCGCCGCTCTGCGACACAAAGGGCTCCTACACCGCTCAGTACGAACACACCATCCTGCTCAGGCCCACTTGTAAGGAAGTGGTGAGCCGCGGGGATGACTACTGAGCATTTTCCGTAGGCCGGCTGACCTCAAACCAGGGAGAACGggaagagaaagaatgagagaagaTAAAtcagggtcctgttcattagggcacagaacttttgtaaatgttttgcaacagaaaatgatattgagtgtttcttattggacaagtccagttagtccctctgtgttgttttttcttcttcttccgtttggtgcctaatgaacacaacccagtaaaACACAGACAGGAATCCTCACTAGACATTTATTCAACGTTGTTGTGACGTAATTTTAAGTTGCCTAAATCCAAACCTTCAGTAGCTTCAAGAGTTTTAGCAAGAGCATGAGACTGGTGTCAAGGAAGTAGCTAACTTATGACATGTATTATTTCAAAGGATCAAGCCAATAAATAAGGGCATATAAAAAGCAAGAAATATAATCTTGACATTTTCTTTATCATACTTAGTTGATTGCTATATTGCTTATTTAGAATAAAATGAAATATGCAAAAT

Function

GO: NA

KEGG:

id description
K01265 map; methionyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65234 lncRNA downstream 25722 53345733 ~ 53347979 (-) True G58672
TU65219 lncRNA downstream 77352 53295248 ~ 53296349 (-) True G58659
TU65154 lncRNA downstream 168386 53204782 ~ 53205315 (-) True G58596
TU65073 lncRNA downstream 326030 53047592 ~ 53047671 (-) True G58523
TU65069 lncRNA downstream 341680 53030578 ~ 53032021 (-) True G58519
TU65173 lncRNA upstream 141 53384617 ~ 53386535 (-) True G58613
TU65256 lncRNA upstream 9472 53393948 ~ 53400122 (-) False G58694
TU65257 lncRNA upstream 9472 53393948 ~ 53394983 (-) True G58694
TU65284 lncRNA upstream 39122 53423598 ~ 53423861 (-) True G58717
TU65286 lncRNA upstream 42148 53426624 ~ 53426857 (-) True G58719
XM_021605028.2 mRNA downstream 35217 53337030 ~ 53338484 (-) False LOC110525078
XM_021604990.2 mRNA downstream 63576 53299267 ~ 53310125 (-) True LOC110525034
XM_021605000.2 mRNA downstream 63580 53299267 ~ 53310121 (-) False LOC110525034
XM_021604995.2 mRNA downstream 63581 53298363 ~ 53310120 (-) False LOC110525034
XM_021605006.2 mRNA downstream 69339 53299267 ~ 53304362 (-) False LOC110525034
XM_021605237.2 mRNA upstream 329237 53713713 ~ 53758738 (-) True LOC110525255
XM_036980325.1 mRNA upstream 377136 53761612 ~ 53769097 (-) False LOC110525178
XM_036980313.1 mRNA upstream 377136 53761612 ~ 53774543 (-) False LOC110525178
XM_036980320.1 mRNA upstream 377136 53761612 ~ 53774544 (-) False LOC110525178
XR_005051393.1 mRNA upstream 394065 53778541 ~ 53780182 (-) True LOC118964330
TU65226 other downstream 35314 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other downstream 35314 53336609 ~ 53338387 (-) True LOC110525078
TU65118 other downstream 233397 53139458 ~ 53140304 (-) True G58565
TU64168 other downstream 877467 52495898 ~ 52496234 (-) True G57742
TU63128 other downstream 1626481 51746617 ~ 51747220 (-) True G56764
TU65285 other upstream 41488 53425964 ~ 53426316 (-) True G58718
TU65415 other upstream 203946 53588422 ~ 53588770 (-) True G58842
TU65542 other upstream 377479 53761955 ~ 53762896 (-) True LOC110525178
TU65545 other upstream 407354 53791830 ~ 53797014 (-) True G58958
TU66641 other upstream 1344655 54729131 ~ 54737244 (-) True G59978

Expression Profile