RNA id: XM_021605071.2


Basic Information

Item Value
RNA id XM_021605071.2
length 3559
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110525096
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53399050 ~ 53422754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaacataGAAaagctttattttttattaaacataCTTAATTCCAGGAAAACTATTTAAGTCATATTGTAGTTAATTATAGGCCATacatctggaaacactggacagttactgtAAACACAGTTGACCAACAGCAGGGGATGAAATAATATAAGAAATTGTGTAACAGCAGGTGACACACTACGGAATTAGCTACATTGTCATTAATTGCAAAACTCGAATGACATGGTTGAACTGAGGATACACCAGGACTCAAAACAAAAAGTCATGCGGATCACGGAAAGGCCACAACTTCGGTTTAAAAGCCTTCAGTTGTGATATTCAACAGAATACGCTACATTTTGCAAGCCTTCCGACTCGCGATGCCCGGGTGTTTGAGCTAATGCGCAGAAGCATCACAACGTGTTTTGAGGAAAAAGGTCACGAACTCTGACCCTGCCTGAAGCAGGAGCAAAAGACAGAAAAATAACATTAATGTATTACCTATACAAACAGCGTACAACAAGCAGAGCAGTTTGATGTGCCTCCTGGGGCTTTGATGTGAGCAGCAGCAGAAGGAAACAGAATCAGCGTCatggacagacagactcagaggaTTCAGCTGGTGTCAGCTGATGGTGGCATGATGGGACACCGTATCCAGATTGTGACAGACCAGTCCACGGGCCAGAAGATCCAGATCGTCACTGCATTGGAGCAGGGTTCTGGTGGGAAGCAGCAGTTCATCCTGGCTAACGCAGACTACTCCACGGCAGGCAAGTATTTCCAGTTTGTGACGGAAGGGTCAGACCAGGCCCTTTCCAAGCCCGTGGTGGAGTACTGTGTGGTGTGTGGAGACAAGGCCTCAGGTCGTCACTATGGGGCAGTGAGCTGTGAGGGCTGTAAGGGTTTCTTCAAGCGCAGCATCAGGAAGAACCTGGTTTATACATGCAGGGGGTCCGGAGAGTGTGTCATCAACAAGCACCACAGGAACCGCTGCCAGTACTGCAGACTTCAGCGCTGCATGGTCCTGGGCATGAAACAGGACTccGTTCAGTGTGAAAGGAAGCCGGTGGAGGTATCCAGAGAGAAGTCTATCAATTGTGCTGCATCTACGGAGAAGATCTACATCAGGAAGAATCTGTGTAGTCCTCTGGCTGCCACGCCCACCTTCGTCACCGACAAGGAAACCGCCAGGTACTACAAGGAGACAGCCAGATCAACCAGTTTGCTGGAGTCGAGCATGCTCCTCAACATCCAGCAGCCATTCCCCAAGCTGGAGAACACCATCCTGCTCCCGACATCCCCTGAATCGAATGACCAATGTCAGGGTGACCTGAGCACCCTGGCCAACGTGGTGACATCACTGGCTCACCTGAACAAGGCCCGGGAGATGAGCGACATTACAGACGGCAATGACCTAATGGGTGTGGACGACACCCTTAGCAACGGAGACAGCTCAATGACGGATCTCCAAGGAGACGAACAGACCGCCAGTGACATTACGCGAGCGTTTGACACCCTGGCCAAGGCCTTGAATCCTGGTGATGGCTCAGCGGGAGACACTCTGGAGGCCACGTTGCAGTTGATGTCAGGGGACCAGTCCGGCCCTGTGGTGGAGCTGGAGGGGCCCCTTCTCTCAGACAGCCACGTCCCCTTCAAGTTGATGATGCCTTTGCCCATGCCTGAGTACCTAAACGTGAACTACATCTGTGAGTCGGCCTCAAGGCTCCTCTTCCTGTCCATGCACTGGGCGCGCTCCATACCTGCCTTTCAAGCCTTGGGTGGTCTCGATAATGACATTAACCTGATGAAGGCTTGTTGGAACGAGCTGTTTGCTCTGGGCCTGGCTCAGTGCGCCAACGTTATGAATGTCGCCACCATCCTGGCTGCCATCATCAACCACCTGCAAACCAGCCTACAAGAAGAGAAGCTGTCCCCAGAGCGAGTGAAGCTGGTGATGGAACACATCTGGAGGATGCAGGAGTTCTGTAACAGCATGGCCAAACTGTCCCCTGACTCGTATGAATACGCCTACCTCAAAGCCATCGTCCTCTTTAGCCCTGACCACCCAGGCATTGACAACACCTTACAGATCGAGCGGTTCCAGGAGAAGGCTTACATGGAGCTACAGGACTATGTTACCAGGACCTACCCAGAAGACTCCTATCGGTTATCCAAGCTGCTGCTGCGTCTCCCGGCCCTGCGGCTGATGAGTGCAGCGGTGACAGAGGAGCTGTTCTTCGCTGGCCTCATCGGCAACGTGCAGATAGACAGCATCATCCCGTACATCCTCAAGATGGAGTCCACCGACTACAACAGCCAGGTGGCCACTGGAGTCTGACCTTTTGACCTGACCCACTCCGACCTGGTCGCCACAGCAGCCTAAAGCGTCTCCTGGTCACCATGGCAACTTCACCTGCAGGCCAACTGTAGGGCTGTAGGCGAGCTTCCAAGGTAAAAatgcagggtcatgttcattagggcacactattagcaaaaaaaaacatctgtggGAAGTTCAGATCGTGCCtccatgttttctttttttttcgcTCCATTTTGGACGTTTTTTCTTTCCGTTTCgtacctactgaacacaacccaggttgGCTGCATTGCTGTGTGTCCACCTCCCTAAACAGAATCTGAAGGTTTTCTCAATGGAATCAgatgaccttcaatgctgaaacAATCCTTTTCTTTGACAACCTGATTATAGCTCAAGAAGGAAGACTAtgtagtccacacacacacacacacacacacacacacacatccacatacaGCCGCCACGCCTAATGTTATCCTCAGCTTCAACAAATGAACTTTGAGTGAGTCAATCAAGCTTCGTAAATTGTGCTCTTTagtaatgtacagtacatttacaTATGTAGGATAAatgttgttgctgagaattttcctgcacaacaggaaatgcaaacttgtgtATTCagggtttaaaaaggcttctgaagtttgtactTTCCGCTTTAAAATGTCTGACTTGATTTGCCTTGACAGCATTGTTTTTTAATCAACCCCTACAGATTTATTTGTCCACattattcacatttcctgtttcaaccggattattttcctgctgttgcaaactggctcaaattaagatccttcatCTGTGTTCTTTATATCCCTTCATTTTGTGCTTCTGATCTCGTTTGTATTTTGATGAACGGACAGAGGAGCTGTTTTACTTTTTCAGAGTGCCCGCCTCATCTGGTTTCAACATGCACTTGTATTATTTTCCCCCCCAAAATTGAAGAAACTTTTTTGTCAATGTTGGTTTGCTATGATGTGATCAGTTAAGGCTATAACCTTTATGGTATTTGTTTGCTAATCCGAAGGAAAAGGCTTGTATCATGAGTCAACTCTTGTCTAACTTGGAACTCAAAGCatcatgtatgtatgtgtaaatATGTATATAGAAATATGTGGAGAAAAAGCTATCATGGACAAAAGATGCTTATTACAAGAATTTGCAGCTTTTTGACAtgtaaatgtagttgctaaaacAATTGTcaagtcatttaaaaaataaaatgacattttcaatggtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64684 lncRNA upstream 61740 53334741 ~ 53337311 (+) True G58181
TU64690 lncRNA upstream 84066 53233535 ~ 53314985 (+) True G58187
TU64789 lncRNA upstream 192794 53204076 ~ 53206257 (+) False G58278
TU64793 lncRNA upstream 193491 53204647 ~ 53205560 (+) True G58278
TU64695 lncRNA upstream 367098 53031123 ~ 53031953 (+) True G58192
TU64906 lncRNA downstream 2786 53425540 ~ 53425822 (+) True G58369
TU64908 lncRNA downstream 3873 53426627 ~ 53426922 (+) True G58371
TU64909 lncRNA downstream 4210 53426964 ~ 53427210 (+) True G58372
TU64874 lncRNA downstream 14832 53437586 ~ 53558274 (+) True G58346
TU65413 lncRNA downstream 164208 53586962 ~ 53587198 (+) True G58840
LOC110532423 mRNA upstream 25589 53355751 ~ 53373462 (+) True LOC110532423
XM_036980058.1 mRNA upstream 102566 53250609 ~ 53296485 (+) False LOC110525022
XM_036980062.1 mRNA upstream 102566 53250612 ~ 53296485 (+) True LOC110525022
XM_036980054.1 mRNA upstream 165877 53187018 ~ 53233174 (+) False LOC110525010
XM_021605103.2 mRNA downstream 14780 53437534 ~ 53485553 (+) False LOC110525151
XM_021605109.2 mRNA downstream 14781 53437535 ~ 53485553 (+) True LOC110525151
XM_021605122.2 mRNA downstream 69092 53491846 ~ 53557609 (+) False LOC110525170
XM_036980134.1 mRNA downstream 69092 53491846 ~ 53557609 (+) False LOC110525170
XM_036980137.1 mRNA downstream 69093 53491847 ~ 53557609 (+) False LOC110525170
TU62774 other upstream 1948116 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3315055 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4505139 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5015794 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5374093 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 243461 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 565386 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 622095 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1298434 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2482754 55905508 ~ 55923376 (+) True G61202

Expression Profile