RNA id: XR_005052111.1


Basic Information

Item Value
RNA id XR_005052111.1
length 5108
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110525170
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53491846 ~ 53557609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtgtgtgtgtgagcgggagagagcaagagggagtgCTGAAAAGCTTTCAGAACTTCGGCGCACACACACCACTGTGCAAAATCAGTTGTAGAAAaaagggaaagagacagacagacggaggttGTTGTTTGGAAAAACtgcatattttttatttcattctgctcctcccctcttctctctcggcatctctctctcccacgctACCGAGAAGAGAGCAGAGGCTTCAGCTCCCTGGAACTCTCCACTACTCCTAAGGGAGGTCATGGATGGACTGCGATTACCTCCACTCATTGAGGATGCACTGGAATCTACAGATGAGCCCTGTGGAGATCTGAAAGCGGAGAGCAGCCCCAGCCTGAGCCCCAGCATGGACAATGAGATCACCGCCAAGGAGAGAGGAGTACTGGAGAACAACGAAAAGGAGACAATGGACAGAGatcaggaggaggaggaggagaaggggaggagggagcagcAGGAGCCCCTGTCTGAGGAGCAGGAGCTGGAGGAGTTGAGGAGCCAGGTGCTGCAGCTCCTTCTGGAGTTAGAGGAGGCCAGGGAAATGTCCAACAAACACCAGGAGGCCTTCCACGAGCTACAGGGTCTGCTGGAGGATGAGCGTCTGGCCAGTGCCCACCAGGCAGAAGCCTTTGCACGACAGGTCCACAACCTGCAAGCCCAGCTGCGTTCAGTACAGGAGGAGATGGACTCtctagaggaggagaaggagagtgagcTGACTGAGTCTCACGAGGAGCTACGCCTCGCCCAGGAGGAGGTTCTGCTTCTGCAGCAGGCAGCTGAGGAGGCAGCGGCCGAGAGGGAGAACGACATTGCGTCCCTGCAGGAGGAGCTGTGTCGCCTCCGGGCCCAGCTGGGGAGGCTCAACGATGAGGCGCAGGAGTACGAGCTGGAGATCACCACACTGAGAGCAGAGATCAGCATGAAGAGtcaaaggagggaggaagagaggaaaggagGTGATGTAGGTACACTGAGGCAGGAGTGTGTCACTTTGAGGGAGGAGTGTGAGACTCTGAAGGACGACAACAGACGCCTGACTGAGAAACTACAGCTCCTCCAACTACAGAGGACAGGCTCCAACAGCGTATATCTGTCCCTGAAGGATGGTGAGATAGCTGGTACAGGAGTGGGGGTGGGCACAGAGGAGGGGGGCATGGCGGAGAGCTATATGACCATGGTCGAGTGCCAGTCTACGAGCCCAGGCACCAACTGCCGCCTTGTGGACGCCTCCATCCAGAAGAACATTTCGTTCGATGGGAAGCCCATGACCCCCACCGGCTGGAATGGAGGATTTGGGGAGATCTTCTCACTGAGGGACCAGCTGAAACAGGCTGAGGAGAAGGCCTTGCTGGTACAGAGACAGtGTGATGGGTTGAAGACGGAGCTGCGGGAACTGCAGGAACTGTATGACTGCAGCCAGAGGGAGAGGGCTGAATTGGAGGAGGAGCTACTGCACTGCAAGGCAGAGCTCGAGAGGTTGGCTGGAGGGTGGCAGGAATGATTGTAATATTGGGAGTGGTTTGGTGCTGGTTGTCCGAGCTGGCGTTCCAGAAAGCAAGGGGAGTGATATAGAATGGAACCCTATTCTGACAGTCACCTCAGCAACAGCTGCGCTTCTGATCATGGTTAGCTTGTTGAGAGCCTTGACCTGATGTTGAGCAGAAAGACAACAACTGTATACGGACAAAGACAGTGATGTCTGCTTATAGACCGCTACCTTCCATTCTACCCTCCTATCACGTCTATCTGGGACCCTACCAGGGCGCCAACAACAGATCAGACACCATTCCTCTAATTCATAGCTTGGAAGCAGCAAAATATATTTAACTATTCAGAAAAACACAGGATTTGTGAAAGGAATGTTCTGAAATTGGTAGATAAAGTGATGTGCTGCCACAGCTTTTCAGATGAAAACAGATGGATTCATTTTCTCCCCTGTTCTGGGGAACACATGTCAAGACTTATTAAGAGAGTGTCTTCGTGAAGCTAAGAAGAGAGTGTGAATACATAGTTTCAATGGGAGAGTACCTGTTGAGCCTAAATCTATGTCTACTCCTGTCGTATCCTAttcctttcctgtctctctgttgatTTGCTTAAGTCCTCCTGAGTTTGAATGTCCAGTATTATTCTTATACAACACTCACCTTGTCTTTCTACATTAATTTATTATGCTACTATCAATGTTGAGTCCTCTATTGATTTGCCTTTGTGATTAGTTCTCTTTAACAATAGCAACCTCTGCATCTTGCACAATTGCTGAATAAAGCTCTTTAACTCATGATATTGTAAATAAGTACTAACAGAAATGTTCTTCAAATATAATTATATCTATGTGTACTGAATTATTTAAAGCGCCTGTcgaactcattccacggaggaccaagtgtctgcaggttttcgccCTTGTACTAATTCGTAAGCAACTCCCCTCACTTGGTTGTCTAggcaatattttaaaaaataacaaagacAATCGGCACTCCgtgaaatgagtttgacacctctgATTTAAAGGAATATGTCAAATACATGAAATAATGATGTATTTTGAATAGCTTGTGTCTTGTGAATAGCTAAAACCCTAGGGATTTCTCTGAATTAAAGTGAAATTAGTCATGAAGGTCTAGTCTAGAGTGGCAGATACTTTCCCCTAAAGGCAATAACTAATTTATAACACATACACTATGTTCTCATCAATTATACACTGTTGTGAAAAAGTTTTTGCCCCCTTTCTGattctctacttttgcatatttttgatactgaatgttatcagatcttcaaccaaaacctaacaTTAGATAAAGACCTGAGTGAATGAATAACGCACCAATTACATACTTATTTCATAAACAatgttatgcaacacccaatagGTGAAAAAGTAGTTGCCCCCCTTAcgctcaataactggttgtgccacctttagctgcaattaCTCCACCCAAACGTTTCCTGTAGTTGTTAGGCCATTCTACAAATGTCACTGAGTTAAAGCAGATCTGCATGGAAGTGTGGGACAAGATTCTTTCACAGTGaagtgagagactgatcaacaactacaggtaGTGTTTGGTTGTAGTCATTGTAGCTAAAAGTGGCACAACCAGTCATTGAGTGTAAGGGGTCAGTTattttttcacacaggggaactgggtgttgcataacttttgTAATTAAATCATTAAAATATGTTTGTTATTTGTAagctcaggttccctttatctaatattaggttttggttgaagatctgataataTTCAGTATAAAAAAATAGGCATAAGTAGAGAAAATCAGAGGGGCAAATACTTTCACGGCACTCTACATGTACATTTacttaaaaatataaaaatcatTCCACTCGTTCTATCTTTAGTGAGGATGAGGATGTTCAATCTTTGTGTCGAAGTTGTAAATACCTATTTGTTATGGTTTCCTCATTAAAGAGAGAAGAGTATGTGAGATAAGCTCAGCTCTTCTAAAGCACCTGTCAACCCTAGCCCGGTGTTTCAAGCCTATGTTTAACCACCACCTCACCCACATAGGAGTGTCCTAGCTATGTTTGTCCACAGTCACagtcactttaaaaaaaatgaatttaattTAGCCCAGGGCACTGTCAAACAGACTTGGGTTAAAAATCTCAAATCAGTTCAAATACCTCATccgtgcttgattgagcttgtttGTTGAATGCACCAATACAAAAGTCCCAAAATTGCAAACCACACCCATCTGGCACTTCAGGCAGGCTAGAGAAAACACTCAGAGTATTTGAAAGACGTCAAATAgtattcaaatagtatttgaacccaggtctgtcgcCGGTAAAGCCTGCATGACTGCACTGTCATACTATGACAGTGGAATCaacctcccccccaaaaaataaattcAGATGCCAGATTAATAAACAAGTCCACTCACATTCCAAGTAGGGTCACATCTGGAGGTGTCTCTGACACgtctttgatgtcttcaccagtTCCCCTTGAAATCTGAAATGGTTTGTGCAGTAACACATTAGTGTTAAATCACCTATTTGTAATGTATTGATCATGTTATCTACTTATTTGAACATACAGTAGCAGCTATTCAGTGGGTATTTAACTTTGAACTTGTGAATATTTACAAAACACCTGTACGCACTAATCATAATTGAGTTTTCCCTGTATCCTCTCTCTTTTATTACTCAAAATACTATTATTATTCAGTATTACTACTCTCgttaaaatgtatataaaaaggAACCTACAGGTGTTTTTATGAGAAGGACAAGCGGCTTTAGTGTCTTTGCTTGGTGTTTGCACATGTAGTTGAGACTGAGATGTCATTCAAATGAATTGTTCAGATTGTTCTAGTTCCAGGTACACAGCATGAGAATGTTGACAGTCAGCATTCCATAGTTTAATGCTCTTGTGGTCATACCAGAGATAGTACATTTACTTTCTACCATATCTGGTCATAACATGACAATAAGGATGAGTGTGGTGGTGGCAGAGTAGACTAAGTGGCAGCTAAACCAGTTTGATTGCAGAAACCATTCTTGAAATTGGATTGTTATGTCAATTATGTTCATTTTCTTTGCTAATTCAAAATATGTCTAGATTGAACTGTCACATTCAAATCCAAGGCAGCATTTTAATGGTTTTAACTTCTCTGATAACACCTGGGAAATTTTGTGACACAGTAAAAGTATAACTACTTCCGAATGTAAAAAAACGCATGCTACATACAGTCTAAGAGAAATGTTATAGTTCATTTATGTTTAATATGATGTTTCTGTTCTACTCTGTATTTGATGTAAATAGTCAGAAGTGGTATAGAGTAATGGGAGAGATATATTTCTCCATTTGTAATAGATTTGTAGAAAGTCGATCTATTTTGAAAGAGCAGTGTATATTTGATAGCCAAATTAAGCTATATGTAAAAGCCTATTCATGGTGAGTTTATATTGATAATTGTTTTCCATACTTATGTTTGGTTGAGTAATCACTGGATGCATATAGAGGTTTTTCTTCTTTCTTATTTGCCAGTATAAGTATGCTATCGCTAAAAATAAACAACCCACCAAAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64909 lncRNA upstream 64638 53426964 ~ 53427210 (+) True G58372
TU64908 lncRNA upstream 64926 53426627 ~ 53426922 (+) True G58371
TU64906 lncRNA upstream 66026 53425540 ~ 53425822 (+) True G58369
TU64684 lncRNA upstream 154537 53334741 ~ 53337311 (+) True G58181
TU64690 lncRNA upstream 176863 53233535 ~ 53314985 (+) True G58187
TU65413 lncRNA downstream 29353 53586962 ~ 53587198 (+) True G58840
TU65416 lncRNA downstream 32304 53589913 ~ 53590161 (+) True G58843
TU65418 lncRNA downstream 33272 53590881 ~ 53591113 (+) True G58845
TU65422 lncRNA downstream 39424 53597033 ~ 53597391 (+) True G58849
TU65428 lncRNA downstream 40592 53598201 ~ 53634505 (+) True G58855
XM_021605103.2 mRNA upstream 6295 53437534 ~ 53485553 (+) False LOC110525151
XM_021605109.2 mRNA upstream 6295 53437535 ~ 53485553 (+) True LOC110525151
XM_021605092.2 mRNA upstream 69094 53399584 ~ 53422754 (+) False LOC110525096
XR_005052119.1 mRNA downstream 40585 53598194 ~ 53610739 (+) False LOC110516195
XM_036980156.1 mRNA downstream 40585 53598194 ~ 53610792 (+) False LOC110516195
XM_036980151.1 mRNA downstream 40585 53598194 ~ 53610835 (+) False LOC110516195
XM_036980182.1 mRNA downstream 40585 53598194 ~ 53610835 (+) False LOC110516195
XM_036980164.1 mRNA downstream 40585 53598194 ~ 53616092 (+) False LOC110516195
TU62774 other upstream 2040913 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3407852 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4597936 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5108591 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5466890 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 108606 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 430531 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 487240 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1163579 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2347899 55905508 ~ 55923376 (+) True G61202

Expression Profile