RNA id: XM_036980243.1


Basic Information

Item Value
RNA id XM_036980243.1
length 6049
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC118936380
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53632830 ~ 53705421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGGTCTCATTTTTTCCAATCAGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAAAAAAGTCAAGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAAAAAAGTCAAGACCAAGAGGACCAAGAGAAACAAAGTGGAGCAGATCACTGATACAGATGCAGGTCCCTCTACATCTGTGGAATTCTCTGGGATGACAGTTCAGGGGACATCTCACCAGGGACAATCTAATGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGGTTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGCAATGGAGGCAGTTAAGCATTGGCAGGATGGACCCTGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGAGATCCTCTAGCACAAACCTGAAGGTTCGCAAGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCCAAATCAAGCTCCTCTCGTAATGGGTCTCAGACATTGTTGCCAAATactcagggagatggtgagtctatTTCATCTGAGCCACTCAGTGACTTTTTTGGGATCACTGAGGACAGTCTCCTCACTGGTGTCCAGGATTCCTTCAAAGAGTCGCTGAACAATGTCCTCTGTATCCAAAGAGAGGGCCAGGTAGACACTCAAAGTCTATCCCGGGTTATTGTTGGAGAAGTGTCAAAGAAAGTAAATTCCATCATCTCTGTGGCCATCCAAACTCCCATCTCTGGGCGAATGTCCCCTGTCATTTTTGCCAGTGGTGGTGTCTCCAGCACCAAGGTGGTTGAGGAGATGGTGTCTGGCATTTCCAACATACTTCAGATGTACATTAATGGGAAGAGTGTTGAGCAGAGTGTTGTTCTCAGAGAGGATGGTGTTGAGGTGGATATGACACATTTAACAGGACAGGTCATGACAGCCCTCAGTGGCACTGTTTTGAACTTCAGCAATAAGGAGGAAAATGAACCCGACAAGAGGGAACTGCTTTGTGTTGTTGCTGACCATATGAAGAGGCTTGAAGCTTGTAAAAGTCCTGAGGAGATGCTAAAACAAGGAGAGAGCAACCTCAATATCAAAGGTACCAAATCTAGTCTTTGTCTGTCAACACAAAGTATGGACAGACTACTCACTGAGGAGTTTCAGACCAAGGCCACTGAATCGATCCGGGAGATCGTTAAAAGATTCAGGGGTTGTGCATCATGTTGTTCTGGCACTACATCATCTAGTCCAACTCCTAGGATAGGTGAGATCAGAGACCTTATGATTGACCCTGAGGCTTCTGAGTTGGTAAGTACCTTTGTTTCAGACATGGACAATCTTACCCAGTCTATCAGGGCATCCTGCTCCCCTGCACAGAGTGAGCAGATCCTTCTTGAAAACCATCAAAGTAAGATCTGGTCTTACACTGTTGGTTGTTACTACGACATGAAAAATACGCTGAAGAGGCTCCTTACCTGTCCAGAAAAATGGGATCTCGCAAGTACATTTGTGGAGAGCACAAAAGATTCTTTCACAATGGTTCCAACTTTGTGCCTGGACATCGGTCATTCCAGTAATGGTGAGGCTGACACATCGGACTCCATTTCTTGTAAACCACTTTTAATAACCTCCTCATCTATGAATGAACAAAAAGGACAAAGTGAGACCCCAAAACCTCTCTTGGCTCTCAAAAAGTATTTGCAAGACCAAGTTCTCCTTGACACCGCAAAAGCGATTGCCAGCCAGGTTCTAGTCTTGTATAAGACTGAGGTGATGGAGAAGTTCTCATCTTCTGTTGGAGAGTGTGATTCTGAAGAGTCTCTGGAGGCCATTCTATTTGTGGATGGCATCATGTCTGACTTGAATGATTTCACCAGTTCTTGTTCCGCCTCACCATCTGAGTTGTTAGACAGTGAACAATGTCTCTCCCATCTCACTTTTCCACTTGGTCTGCAGGACAGCACCACCAACAGTGAATCTACCCAGAGTCTTCCAGTTATAAATATGAAGAAACTCTCCAGTGTGTCTTTCCAGACAAAGGCTAGAAAGGCAGTGAGTGAAGCTCTGAGATCTGTCAACCCCTTTACAAACAGCTTACTGGGAGACTCGGAAGCATCTAAATTGCTGGACACTTTTGTAACAGATGTGGAGACTATTGTTCAGTCCATGCAGGCACATGACTCTGAAAATTTCAAAATGTCAAAAGTGAGCACCCTTTCTGCTGCTCGTATTATATATCATAGATTTCGAGAAATGCTGAGGTGGTTTCTCACTCCCTGCCAAGACTCTGTAAAGGTCATCGATGGTGTTACACCAATACATAATGAGACTCTCAAACAGGCTCCTAGTGAAAGTTTAGATTCTCAGGTGACTTGTAGTAGTGATTCTCTTGAAATCCAAGCAGACCTTCAAACCTGTACCAAGGAGGTCATTAGTCAGATCCTCACTGTGTATCACTCCGAGGAATCCATGGAGGAATGCATATCTAGCCTAAAAGGAGATACAGAAGACCTGTCCAAGCTTTTGGATGCCGTTGTTTCTCAGATTGACGTCCTTGCCGCCTCCAAATCATATTTATTTGTTTATGACTATGCTGTCAATACACAGGACAATTTGCATGGTGAGATCAACAATATTGAGGAGGAGGCATCCTCTAGAAGTCTTAAATCCACAGCCTTTGACAAACTATGTACTGAGGAGTTTCAAACTAAAGCCTCACATATGGCTGGTGGGATCCTTCAATCAGGGTTAATTGGCATTGTAAATACCAACCTTGATGGTAGAAGTGTAGAGTCCAGTAATGAAAGTGATGTCAAAATCCTTCAGAAGAGTGGAACTCCATCTTTGTTCACCTCTTCTCTGCACACCAATTCTGCAGCATCCAACATTGTCATAAGCATCACTAAAGACCTTAATAGCTTCACCCAGATGACTAAAATGTCTGATGCTTCAGTGTCTGGCCAGTTAGAGAGATCCCTGTCAGCTTCAACCCTTCCTGTCAGTGTTCACAACGGGGCCAATGTGAAAGGAAAGATAATTTGGCCAGGCACTGTTAACCTGTTCAACAATGTGTTCACCAAGGTCAAGGATTTTTTTGCCCAGCAACAACCGGTCCTCCTAGACAATGTGGTTGAGGCCCCCAAACATGCCGAATCCATATGCAGAACAGCTACTTCTACACAAATGACTTACAGTGAACATGAAggcagccagaccagcatggtaaATTATTCCAAAACCTTAATTAGTCAGACTCTGATGACAATCCAGAGCAGAGTGTCTATGTCAGAGAGGATGAGCACCTCAGAGAAAGGCCTCTTGACTTGTTCCATCGTGGGCTCCATGTTGGAGGATGTTGACATGGTGAGAACTGATGGAAATGAGATACACCGGCCATCCTCCTCAAAGTCCTCCCTGTCCATCACCTCTGCCATGACCAGAGGGTCCCAGAGTGATTTTACAAATTCTCTTCCAGGCACTCCAGTCCCCAATGAGTGGCCTGTTGAAATCTATTGTCCTATCATTAGGAGTTCGGTCATTGATATGAGTGACTCCTCAACTCATTCACAAGGGTCAACAAATTACACAAGGCAAACCATTTCTGCCATAGTTAACACTGTTATGGAGGTCATTCCAAGAAAAGATACGGAACACATAGCAACTGCAGATGATGTCACTTCTTTTACAAGAAGACTTGCGAGACTCAGCCCCAGGGACGGTCTTCAGAACTTCTCACATGAGCTCACTGACAAAGTTTATGAGCTCATAAAAAGTCACAACACCCCCCAGGCTCTTTTTGTGCCAGCTGGCAAGAGCGTGTCTGACTCTATTCTTTTGAAGCTGAAGACAGGATTGAATGCTTCTGAAGAATCCAGGGAGTTTCCATCTGACCTTGTGTACTCCTTTGCTACGGAGTCAATAAAACGTCTGCTACAGCAGATTGTCTTCTGGCTTCCTCCACCATCACAAGGATCCGATTTCTGCCAAACTGTCATCTCTGATGGTTCTCTGCAGGACACAAGTCAGCTTATCCCGAGCTCTTCTGCCATCTCCATTAGTTCCTCACAGGTTTACTGTGACACAAAGAGCCTTTTCACCAATATAATGGTCAATCAGGTCATGGATACCTGTTCTGTGGCCTCCAGTTCATCAGAAGAATTATCAGAGTTGATGAACATAATCAATGGGTTGTCCCCAACTGATGCTGGAACACTTGACTCTGACAGACCGGCTCTCATGACCACTAGCCGTCAGTCTAGTGCCAAATCATTGCCTAGAACCTCTCTGTCTGGCAGCAGCAGCACACACAACGGTGGAACTGTGGATATTCAAGTTTTAGGAGAGGTGGAATCCAAGATGGACAACAAAGATCTGGAGATGTGTAGTGTCTCTGTGTATCCATCAACTCCATCAGCCATGGACTCTGATACACATGCATCATTTGACTCCACTAGCAATGACTACACCTCTTTGGTACTTTTACTGATTGTTAGATTGCTGTCAATGATCACCCCTATCACATTACTGGAATCCTCTGACATTGGTGAAACATCAAGAGTTCTCACAAAGAGGATTCTGTCTGAGTTCTGTGGCACCTCAGGCCTTGAACCAACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAACTACTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACCCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcagcTCTCTCTGTGGACTCAACCCAAAGTGTACAAAGAAGGTCAACAAGAAGAACCACTGCATTCCAACACCTTCCCAGAACCAGACCCCTGCCGTCAGTGAAACAGattATGCCTGCCCACCCCATAACCCTACAGCCAACACGACGCCATATacttggtctgtggttgtgaggccggttggacatactgccaaattctctaaaacggcattgaaggcggcttatgcaATTGTCAAAGATCAAGAATCCTGCCAAACAGAGAGTGTATGCTCCACCAAGAAGAAACCAAGGAAGCGTTCGCTCATTTCCAGGATGTTTTCAGCTATAGGCAAAGCCTTTTCCAGTCCCTTTACTTCCTGCTATAAAAAGAAGAGCACCTAATCTATAtttcaaaataaatatttgaaaTTAACATAATTGCATTAATTCTTCATGTTGAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65438 lncRNA upstream 11872 53616821 ~ 53620959 (+) True LOC110516195
TU65422 lncRNA upstream 35440 53597033 ~ 53597391 (+) True G58849
TU65418 lncRNA upstream 41718 53590881 ~ 53591113 (+) True G58845
TU65416 lncRNA upstream 42670 53589913 ~ 53590161 (+) True G58843
TU65413 lncRNA upstream 45633 53586962 ~ 53587198 (+) True G58840
TU65445 lncRNA downstream 11106 53657802 ~ 53692144 (+) True G58872
TU65425 lncRNA downstream 66641 53713337 ~ 53713755 (+) True G58852
TU65485 lncRNA downstream 113138 53759834 ~ 53760090 (+) True G58906
TU65486 lncRNA downstream 113963 53760659 ~ 53760870 (+) True G58907
TU65488 lncRNA downstream 118484 53765180 ~ 53765412 (+) True G58909
XR_005052114.1 mRNA upstream 11998 53598194 ~ 53620833 (+) False LOC110516195
XR_005052118.1 mRNA upstream 11998 53598194 ~ 53620833 (+) False LOC110516195
XM_036980171.1 mRNA upstream 16039 53598194 ~ 53616792 (+) False LOC110516195
XM_036980250.1 mRNA downstream 19443 53666139 ~ 53680352 (+) False LOC118936380
XM_036980254.1 mRNA downstream 19443 53666139 ~ 53680352 (+) False LOC118936380
XR_005052132.1 mRNA downstream 38705 53685401 ~ 53686098 (+) True LOC118964886
XM_036989706.1 mRNA downstream 240224 53886920 ~ 53903845 (+) False LOC110525273
XM_021605298.2 mRNA downstream 267232 53913928 ~ 53938476 (+) True LOC110525287
TU62774 other upstream 2181896 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3548835 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4738919 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5249574 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5607873 48006674 ~ 48024958 (+) True G52080
TU65446 other downstream 19519 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 341444 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 398153 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1074492 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2258812 55905508 ~ 55923376 (+) True G61202

Expression Profile