RNA id: XM_036980221.1


Basic Information

Item Value
RNA id XM_036980221.1
length 6223
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC118936380
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53632830 ~ 53705421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGTCTCATTTTTTCCAATCAGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAAAAAAGTCAAGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAAAAAAGTCAAGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAAAAAAGTCAAGACCAAGAGGACCAAGAGAAACAAAGTGGAGCAGATCACTGATACAGATGCAGGTCCCTCTACATCTGTGGAATTCTCTGGGATGACAGTTCAGGGGACATCTCACCAGGGACAATCTAATGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGGTTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGCAATGGAGGCAGTTAAGCATTGGCAGGATGGACCCTGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGAGATCCTCTAGCACAAACCTGAAGGTTCGCAAGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCCAAATCAAGCTCCTCTCGTAATGGGTCTCAGACATTGTTGCCAAATactcagggagatggtgagtctatTTCATCTGAGCCACTCAGTGACTTTTTTGGGATCACTGAGGACAGTCTCCTCACTGGTGTCCAGGATTCCTTCAAAGAGTCGCTGAACAATGTCCTCTGTATCCAAAGAGAGGGCCAGGTAGACACTCAAAGTCTATCCCGGGTTATTGTTGGAGAAGTGTCAAAGAAAGTAAATTCCATCATCTCTGTGGCCATCCAAACTCCCATCTCTGGGCGAATGTCCCCTGTCATTTTTGCCAGTGGTGGTGTCTCCAGCACCAAGGTGGTTGAGGAGATGGTGTCTGGCATTTCCAACATACTTCAGATGTACATTAATGGGAAGAGTGTTGAGCAGAGTGTTGTTCTCAGAGAGGATGGTGTTGAGGTGGATATGACACATTTAACAGGACAGGTCATGACAGCCCTCAGTGGCACTGTTTTGAACTTCAGCAATAAGGAGGAAAATGAACCCGACAAGAGGGAACTGCTTTGTGTTGTTGCTGACCATATGAAGAGGCTTGAAGCTTGTAAAAGTCCTGAGGAGATGCTAAAACAAGGAGAGAGCAACCTCAATATCAAAGGTACCAAATCTAGTCTTTGTCTGTCAACACAAAGTATGGACAGGCTACTCACTGAGGAGTTTCAGACCAAGGCCACTGAATCGATCCGGGAGATCGTTAAAAGATTCAGGGGTTGTGCATCATGTTGTTCTGGCACTACATCATCTAGTCCAACTCCTAGGATAGGTGAGATCAGAGACCTTATGATTGACCCTGAGGCTTCTGAGTTGGTAAGTACCTTTGTTTCAGACATGGACAATCTTACCCAGTCTATCAGGGCATCCTGCTCCCCTGCACAGAGTGAGCAGATCCTTCTTGAAAACCATCAAAGTAAGATCTGGTCTTACACTGTTGGTTGTTACTACGACATGAAAAATACGCTGAAGAGGCTCCTTACCTGTCCAGAAAAAGGGGATCTCGCAAGTACATTTGTGGAGAGCACAAAAGATTCTTTCACAATGGTTCCAACTTTGTGCCTGGACATCGGTCATTCCAGTAATGGTGAGGCTGACACATCGGACTCCATTTCTTGTAAACCACTTTTAATAACCTCCTCATCTATGAATGAACAAAAAGGACAAAGTGAGACCCCAAAACCTCTCTTGGCTCTCAAAAAGTATTTGCAAGACCAAGTTCTCCTTGACACCGCAAAAGCGATTGCCAGCCAGGTTCTAGTCTTGTATAAGACTGAGGTGATGGAGAAGTTCTCATCTTCTGTTGGAGAGTGTGATTCTGAAGAGTCTCTGGAGGCCATTCTATTTGTGGATGGCATCATGTCTGACTTGAATGATTTCACCAGTTCTTGTTCCGCCTCACCATCTGAGTTGTTAGACAGTGAACAATGTCTCTCCCATCTCACTTTTCCACTTGGTCTGCAGGACAGCACCACCAACAGTGAATCTACCCAGAGTCTTCCAGTTATAAATATGAAGAAACTCTCCAGTGTGTCTTTCCAGACAAAGGCTAGAAAGGCAGTGAGTGAAGCTCTGAGATCTGTCAACCCCTTTACAAACAGCTTACTGGGAGACTCGGAAGCATCTAAATTGCTGGACACTTTTGTAACAGATGTGGAGACTATTGTTCAGTCCATGCAGGCACATGACTCTGAAAATTTCAAAATGTCAAAAGTGAGCACCCTTTCTGCTGCTCGTATTATATATCATAGATTTCGAGAAATGCTGAGGTGGTTTCTCACTCCCTGCCAAGACTCTGTAAAGGTCATCGATGGTGTTACACCAATACATAATGAGACTCTCAAACAGGCTCCTAGTGAAAGTTTAGATTCTCAGGTGACTTGTAGTAGTGATTCTCTTGAAATCCAAGCAGACCTTCAAACCTGTACCAAGGAGGTCATTAGTCAGATCCTCACTGTGTATCACTCCGAGGAATCCATGGAGGAATGCATATCTAGCCTAAAAGGAGATACAGAAGACCTGTCCAAGCTTTTGGATGCCGTTGTTTCTCAGATTGACGTCCTTGCCGCCTCCAAATCATATTTATTTGTTTATGACTATGCTGTCAATACACAGGACAATTTGCATGGTGAGATCAACAATATTGAGGAGGAGGCATCCTCTAGAAGTCTTAAATCCACAGCCTTTGACAAACTATGTACTGAGGAGTTTCAAACTAAAGCCTCACATATGGCTGGTGGGATCCTTCAATCAGGGTTAATTGGCATTGTAAATACCAACCTTGATGGTAGAAGTGTAGAGTCCAGTAATGAAAGTGATGTCAAAATCCTTCAGAAGAGTGGAACTCCATCTTTGTTCACCTCTTCTCTGCACACCAATTCTGCAGCATCCAACATTGTCATAAGCATCACTAAAGACCTTAATAGCTTCACCCAGATGACTAAAATGTCTGATGCTTCAGTGTCTGGCCAGTTAGAGAGATCCCTGTCAGCTTCAACCCTTCCTGTCAGTGTTCACAACGGGGCCAATGTGAAAGGAAAGATCATTTGGCCAGGCACTGTTAACCTGTTCAACAATGTGTTCACCAAGGTCAAGGATTTTTTTGCCCAGCAACAACCGGTCCTCCTAGACAATGTGGTTGAGGCCCCCAAACATGCCAAATCCATATGCAGAACAGCTACTTCTACACAAATGACTTACAGTGAACATGAAggcagccagaccagcatggtaaATTATTCCAAAACCTTAATTAGTCAGACTCTGATGACAATCCAGAGCAGAGTGTCTATGTCAGAGAGGATGAGCACCTCAGAGAAAGGCCTCTTGACTTGTTCCATCGTGGGCTCCATGTTGGAGGATGTTGACATGGTGAGAACTGATGGAAATGAGATACACCGGCCATCCTCCTCAAAGTCCTCCCTGTCCATCACCTCTGCCATGACCAGAGGGTCCCAGAGTGATTTTACAAATTCTCTTCCAGGCACTCCAGTCCCCAATGAGTGGCCTGTTGAAATCTATTGTCCTATCATTAGGAGTTCGGTCATTGATATGAGTGACTCCTCAACTCATTCACAAGGGTCAACAAATTACACAAGGCAAACCATTTCTGCCATAGTTAACACTGTTATGGAGGTCATTCCAAGAAAAGATACGGAACACATAGCAACTGCAGATGATGTCACTTCTTTTACAAGAAGACTTGCGAGACTCAGCCCCAGGGACGGTCTTCAGAACTTCTCACATGAGCTCACTGACAAAGTTTATGAGCTCATAAAAAGTCACAACACCCCCCAGGCTCTTTTTGTGCCAGCTGGCAAGAGCGTGTCTGACTCTATTCTTTTGAAGCTGAAGACAGGATTGAATGCTTCTGAAGAATCCAGGGAGTTTCCATCTGACCTTGTGTACTCCTTTGCTACGGAGTCAATAAAACGTCTGCTACAGCAGATTGTCTTCTGGCTTCCTCCACCATCACAAGGATCCGATTTCTGCCAAACTGTCATCTCTGATGGTTCTCTGCAGGACACAAGTCAGCTTATCCCGAGCTCTTCTGCCATCTCCATTAGTTCCTCACAGGTTTACTGTGACACAAAGAGCCTTTTCACCAATATAATGGTCAATCAGGTCATGGATACCTGTTCTGTGGCCTCCAGTTCATCAGAAGAATTATCAGAGTTGATGAACATAATCAATGGGTTGTCCCCAACTGATGCTGGAACACTTGACTCTGACAGACCGGCTCTCATGACCACTAGCCGTCAGTCTAGTGCCAAATCATTGCCTAGAACCTCTCTGTCTGGCAGCAGCAGCACACACAACGGTGGAACTGTGGATATTCAAGTTTTAGGAGAGGTGGAATCCAAGATGGACAACAAAGATCTGGAGATGTGTAGTGTCTCTGTGTATCCATCAACTCCATCAGCCATGGACTCTGATACACATGCATCATTTGACTCCACTAGCAATGACTACACCTCTTTGGTACTTTTACTGATTGTTAGATTGCTGTCAATGATCACCCCTATCACATTACTGGAATCCTCTGACATTGGTGAAACATCAAGAGTTCTCACAAAGAGGATTCTGTCTGAGTTCTGTGGCACCTCAGGCCTTGAACCAACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAACTACTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACCCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcagcTCTCTCTGTGGACTCAACCCAAAGTGTACAAAGAAGGTCAACAAGAAGAACCACTGCATTCCAACACCTTCCCAGAACCAGACCCCTGCCGTCAGTGAAACAGcaATTGTCAAAGATCAAGAATCCTGCCAAACAGAGAGTGTATGCTCCACCAAGAAGAAACCAAGGAAGCGTTCGCTCATTTCCAGGATGTTTTCAGCTATAGGCAAAGCCTTTTCCAGTCCCTTTACTTCCTGCTATAAAAAGAAGAGCACCTAATCTATAtttcaaaataaatatttgaaaTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65438 lncRNA upstream 11873 53616821 ~ 53620959 (+) True LOC110516195
TU65422 lncRNA upstream 35441 53597033 ~ 53597391 (+) True G58849
TU65418 lncRNA upstream 41719 53590881 ~ 53591113 (+) True G58845
TU65416 lncRNA upstream 42671 53589913 ~ 53590161 (+) True G58843
TU65413 lncRNA upstream 45634 53586962 ~ 53587198 (+) True G58840
TU65425 lncRNA downstream 33018 53713337 ~ 53713755 (+) True G58852
TU65485 lncRNA downstream 79515 53759834 ~ 53760090 (+) True G58906
TU65486 lncRNA downstream 80340 53760659 ~ 53760870 (+) True G58907
TU65488 lncRNA downstream 84861 53765180 ~ 53765412 (+) True G58909
TU65550 lncRNA downstream 131764 53812083 ~ 53812369 (+) True G58962
XR_005052114.1 mRNA upstream 11999 53598194 ~ 53620833 (+) False LOC110516195
XR_005052118.1 mRNA upstream 11999 53598194 ~ 53620833 (+) False LOC110516195
XM_036980171.1 mRNA upstream 16040 53598194 ~ 53616792 (+) False LOC110516195
XR_005052132.1 mRNA downstream 5082 53685401 ~ 53686098 (+) True LOC118964886
XM_036989706.1 mRNA downstream 206601 53886920 ~ 53903845 (+) False LOC110525273
XM_021605298.2 mRNA downstream 233609 53913928 ~ 53938476 (+) True LOC110525287
XM_036980382.1 mRNA downstream 275476 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA downstream 275512 53955831 ~ 53966503 (+) False LOC110525297
TU62774 other upstream 2181897 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3548836 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4738920 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5249575 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 5607874 48006674 ~ 48024958 (+) True G52080
TU65626 other downstream 307821 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 364530 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 1040869 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2225189 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2339157 56019476 ~ 56030371 (+) True G61284