RNA id: XM_021605237.2


Basic Information

Item Value
RNA id XM_021605237.2
length 3508
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110525255
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53713713 ~ 53758738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCATCAGGAAGTATCAGCCAATCGTGAAGAATAAACTTTACTACTTCACCATGGAGACAGCCTCAATGGCTCTGCCCATGCCGTCGCAGACGCTAGAATGAAACAGATTCAAGACTTGGTCCTCTATCTATATCTACGGTGTTGTGAGTCGAACCAAGGAAGTGACGTTGCCACGGAAGAGCATGGACCGATTCGGTTTCTGTATTTACAGAAGAGTGCTCTAACCGAGTGCATTTACGTAGAGCCCACGACCTACACGCTGGTTACTGACAAACCGAAGGCGACTAGTCATGACGCCGTTGTCACTGTACTTGTGTAGTCTGTTAAAAAATAATAAGTTGTTAATTTGCTACAACTACTTACATACGCATGGAGCACCACTTCACCTCGTCGATCGGGCGGCGCGGAAGACTCGACTCGCTCGGTTATTGGATATGAATTTCCGTGCAGTGTTCCGTGGTAGGGTCACTGGGAAGGTTTTGGCGCAACAATCCGGTGCCAAAAACTATAGGGAGGCTACTATGTGTACCAGTTCCGCAAGTGGCCAGGACATGACCAACTGGTTGTGGTCTATTTACAACGAAACCAAAAAACAGACCGAAGCCTTGATCCCAGTGATGTCTAAGAACAGTGTGAACCCCAACACTATCTTTGCCAATAATGAGATGAGTCTGCACGATATAGAGATCTATGGGTTTGACTATGACTACACCCTGGCTTTCTACTCCAGACACCTCCACACCCTCATCTTCAACATCGCACGGGACATCCTCATCCAGGAGCACAGGTACCCCGAGGGCCTGCGTGAGTACGAGTACATCCCAAACTTTGTTGTCAGGGGACTGCACTATGATGTCCAAAAGGCATTACTGATGAAGATAGATGCCTTTCACTACATCCAGTTGGGAACAGTATACAGGGGTCTTCACCCGGTGCCAGACAAGGAGGTGATTGCCATGTACGACGGCTGCCACGTTCCTCTGGAGAATATGAGTGACTTTTATGGCAAGAGTTCCCATGGCCACACTATGAAACAGTTCATGGATATCTTCTCCCTTCCAGAGATGAACCTACTGTGCTGTGTTAATGACTACTTTATGAAGCACAACATCGACTACGAGCCTGTCCACCTCTACAAAGACGTCAAGGCAGCGATAGGAGATGTCCATGTGAAGGGTATTATGTATCGAGCTGTGGAGGCAGATATGGagaacTATATTTCCTATGGGGAACAGACTCACGCTGTGTTGAAGAAGCTCTATGAGGATGGCAAGAAGATGTTCCTCATCACCAACAGCCCCTTTGACTTTGTGGACCGGGGAATGAACTACATCGTGGGGAAGGACTGGAGAGATTTGTTTGATATTGTCATTGTGCAGGCCGACAAACCAGGCTTCTTCAACGACAGGAGGAAGCCCTTCAGACGAGTAACAGATAAAGGGGTGCTGCATTGGGACAGGATTCACAAGCTGGAGAAGGGGAAGATCTACAAACAGGGAAACCTATATGAGTTCCTGAGACTCACTGGTTGGAGGGGGTCCAAGGTGCTGTACTTTGGAGATCACATTTACAGTGACCTGGCTGACCTGACTCTGAAGCACGGCTGGAGGACAGGAGCCATCATCCCAGAGCTGAGGAAGGAGATCAAGATCATGAACACTGAGCAATACGTCCACCTGATGACCTGGCTACAGGGCCTGACTGGACTCATAGAGCACATGCAGGTCCACAGAGACCCAGCGTCGCAATCTGTTGTCCAGGAATGGATCAAAGAGAGAGAAGCCATGAGATCGCAGACTAAGGACATCTTCAACAGCCAGTTTGGGAGTCTCTTTCGAACGTACCACAACCCCACCTACTTCTCCCGCCGCTTGTCTCGTTTCGCTGACATCTACATGGCCTCCCTCAGCTGTCTGCTGAACTATGACTTCCAGCACACCTTCTTCCCTCGCCGGACCCCCCTGCAGCACGAGTCACCCTTCTGGCCCGAACAGACCAGCGCCGGAGCCCTGAAGATGCCCTTCATACCCCACAGGACCACGACTgaagagtagagggaggtagggtttCAGTGTAACACCCCATCCGGACCTGCTCAAAGTAGAGGGGGACGGGTTTCATTGTGACACACTCCGCCCGGACCTGGTCTGGACACAGAGCTCTCTGTGGGCCCTATTCAGAGTTGAGATTAGTGTGCACAACTCAGTTTTGCGCCGATCATTCATTCATTCGTGTAAATTGGAGACTGGCACAAAATTGTAAGTTAAGTGCGTTGTCTTCAAGTCAGAATACTGTCCTGAGATGGGTTCTGGACACGGCTGACTTGGACTTCAACCGTTCATTACATATTTAGGACATGTGGACTGTAACCTAAAGGCCATTCactagatactgtacatactcCATCTCATATGCTGGCTTTTTCACAATAACTTGAATATTGCTGCTCTTTAAAATCTTGTCACGACATCTCACTATTACACGTGTAGGTTTCATCTATCTATAAAGATTTAGGACGTTAGATAATATACAGTAAGTATATACCCTCTTTAATAGTTCTGCAATGTTTCAATGCAATTCTATTATCATTAAGAGAACCACTAACAGTAGAGTTGCTTAGTATACCAAACACAAAGTATTAAGTTTGATGAATGTGCTTGACAGACATACAGTAGATCAGCAAACTTTCATCCAAACAAGGTCAAAATATGTCATTGTGATCTCTAATTTCTTAGTAAGTAtgtgtgggtgggagagagagcgcaagagaggaTAATTGTCCGTACAGAGTGAATAGCGTTTATTTTATAGCAGTCTTGAAAGACGTCGGGCCAAGACATGATATGTGCATTATCTGTAACATTCATGGTAATcatatatttatgtaaatgtatgaTATGCACTTGTATAGTTAGTTACCTGTGTATTAAGATGCTCTTGGCCTTtttaactatatacagtatctgtaaAAAGTTGGTTATAAAGGGGTAATAAGGGATGACCACCTAAAGCAGGTGGTCTCTGAACCTGtaagcacagagaaacacagactcCTGATATTATCTAGCACAGGAGTTTTGTGTGATGTTGAATTGTTTGAAATGATGACTTGACATTTTCAAAGACATGCCTTACGCGTCTGTCACTAGAACTGCACTGTAGATCATATATTAGTGATGCTTTAGTTTAGAATATATTATTCCCTGGTAATAAGGGAGATAGGCCTACCCTGAAATCATATTTTTCACAAAGGCTTTATTGTTATTAGTAGTCCTTACTAGTTCAGGTACTAGCCACATTAATAGCACTCAGACACAACCGACACAACTGTCAGTTTATTTTTCATAGAAAAGGGTAATATGCTGTATTTCATTGACAAATGTATGTTTCATCGTCCAGTGTTGCGTGGCtatcttttttgtttgttttcttaaACATTGTGCTTTAAAAAGTATAAAATGTAAAAGTGTATTCAAATAATTTACTTTGCATTAAAATGTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65506 lncRNA downstream 78747 53632654 ~ 53634966 (-) True G58926
TU65423 lncRNA downstream 115917 53597123 ~ 53597796 (-) True G58850
TU65419 lncRNA downstream 122250 53590934 ~ 53591463 (-) True G58846
TU65392 lncRNA downstream 150503 53562953 ~ 53563210 (-) True G58819
TU65321 lncRNA downstream 152260 53465915 ~ 53561453 (-) True G58751
TU65538 lncRNA upstream 954 53759692 ~ 53760058 (-) True G58954
TU65705 lncRNA upstream 72009 53830747 ~ 53835745 (-) True G59104
TU65712 lncRNA upstream 97828 53856566 ~ 53917269 (-) True G59110
TU65783 lncRNA upstream 196577 53955315 ~ 53955541 (-) True G59172
TU65792 lncRNA upstream 212789 53971527 ~ 53971753 (-) True G59178
XM_021605039.2 mRNA downstream 329237 53373701 ~ 53384476 (-) True LOC110525089
XM_021605028.2 mRNA downstream 375229 53337030 ~ 53338484 (-) False LOC110525078
XM_021604990.2 mRNA downstream 403588 53299267 ~ 53310125 (-) True LOC110525034
XM_021605000.2 mRNA downstream 403592 53299267 ~ 53310121 (-) False LOC110525034
XM_021604995.2 mRNA downstream 403593 53298363 ~ 53310120 (-) False LOC110525034
XM_036980325.1 mRNA upstream 2874 53761612 ~ 53769097 (-) False LOC110525178
XM_036980313.1 mRNA upstream 2874 53761612 ~ 53774543 (-) False LOC110525178
XM_036980320.1 mRNA upstream 2874 53761612 ~ 53774544 (-) False LOC110525178
XR_005051393.1 mRNA upstream 19803 53778541 ~ 53780182 (-) True LOC118964330
XR_005051403.1 mRNA upstream 42291 53801029 ~ 53802670 (-) True LOC118964334
TU65415 other downstream 124943 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 287397 53425964 ~ 53426316 (-) True G58718
TU65226 other downstream 375326 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other downstream 375326 53336609 ~ 53338387 (-) True LOC110525078
TU65118 other downstream 573409 53139458 ~ 53140304 (-) True G58565
TU65542 other upstream 3217 53761955 ~ 53762896 (-) True LOC110525178
TU65545 other upstream 33092 53791830 ~ 53797014 (-) True G58958
TU66641 other upstream 970393 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 1311654 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1391503 55150241 ~ 55154258 (-) True G60572

Expression Profile