RNA id: XM_036980325.1


Basic Information

Item Value
RNA id XM_036980325.1
length 5448
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110525178
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53761612 ~ 53774544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCACCAGGGACAATCTAATGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGATTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGAGATCCTCTAGCACAAACCTGAAGGTTCGCAAGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCTAAATCAAGCTCCTCTCGTAATGGGTCTCAGACATTGTTGCCAAATactcagggagatggtgagtctatTTCATCTGAGCCACTCAGTGACTTTTTTGGGATCACTGAGGACAGTCTCCTCACTGGTGTCCAGGATTCCTTCAAAGAGTCGCTGAACAATGTCCTCTGTATCCAAAGAGAGGGCCAGGTAGACACTCAAAGTCTATCCCGGGTTATTGTTGGAGAAGTGTCAAAGAAAGTCAATTCCATCATCTCTGTGGCCATCCAAACTCCCATCTCTGGGCGAATGTCCCCTGTCATTTTTGCCAGTGGTGGTGTCTCCAGCACCAAGGTGGTTGAGGAGATGGTGTCTGGCGTTTCCAACATACTTCAGATGTACATTAATGGGAAGAGTGTTGAGCAGAGTGTTGTTCTCAGAGAGGATGGTGTTGAGGTGGATATGACACATTTAACAGGACAGGTCATGACAGCCCTCAGTGGCACTGTTTTGAACTTCAGCAATAAGGAGGAAAATGAACCTGACAAGAGGGAACTGCTTTGTGTTGTTGCTGACCATATGAAGAGCCTTGAAGCTTGTAAAAGTCCTGAGGAGATGCTAAAACAAGTAGAGAGCAACCTCAATATCAAAGGTACCAAATCTAGTCTTCGTCTGTCAACACAAAGTATGGACAGACTACTCACTGAGGAGTTTCAGACCAAGGCCATTGAATCGATCCGGGAGATCGTTAAAAGATTCAGGGGTTGTGTATCATGTTGTTCTGGCACTACATCATCTAGTCCAACTCCTAGGATAGGTGAGATCAGAGACCTTATGATTGACCCTGAGGCTTCTGAGTTTTTAAGTACCTTTGTTTCAGACATGGACAATCTTACCCAGTCTATCAGGGCATCCTGCTCCCCTGCACAGAGTGAGCAGATCCTTCTTGAAAACCATCAAAGTAAGATCTGGTCTTACACTGTTGGTTGTTACTACGACATGAAAAATACGCTGAAGAGACTCCTTACCTGTCCAGAAAAAGGGGATCTCGCAAGTACATTTGTGGAGAGCACAAAAGATCCTTTCACAATGGTTCCAACTTTGTGCCTGGACATCGGTCATTCCAGTAATGGTGAGGCTGACACATCGGACACCATTTCTTGTAAACCACTTTTAATTACCTCCTCATCTATGAATGAACAAAAAGGACAAAGTGAGACCCCAAAACCTCTCTTGGCTCTCAAAAAGTATTTGCAAGACCAAGTCCTCCTTGACACCGCAAAAGCGATTGCCAGCCAGGTTCTAGTCTTGTATAAGACTGAGGTGATGGAGAAGTTCTCATCTTCTGTTGGAGAGTGTGATTCTGAAGAGTCTCTGGAGGCCATTCTATTTGTGGATGGCATCATGTCTGACTTGAATGATTTCACCAGTTCTTGTTCCGCCTCACCATCTGAGTTGTTAGACAGTGAACAATGTCTTTCCCATCTCACCTTTCCACTTGGTCTGCAGGACAGCACCACCAACAGTGAATCTACCCAGAGTCTTCCAGTTATAAATATGAAGAAACTCTCCAGTGTGTCTTTCCAGACAAAGGCTAGAAAGGCAGTGAGTGAAGCTCTGAGATCTGTCAACCCCTTTACAAACAGCTTACTGGGAGACTCGGAAGCATCTAAATTGCTGGACACTTTTGTAACAGATGTGGAGACTATTGTTCAGTCCATGCAGGCACATGACTCTGAAAATTTCAAAATGTCAAAAGTGAGCACCCTTTCTGCTGCTCGTATTATATATCATAGATTTCGAGAAATGCTGAGGTGGTTTCTCACTCCCTGCCAAGACTCTGTAAAGGTCATCGATGGTGTTACACCAATACATAATGAGACTCTCAAACAGGCTCCTAGTGAAAGTTTAGATTCTCAGGTGACTTGTAATAGTGATTCTCTTGAAATCCAAGCAGACCTTCAAACCTGTACCAAGGAGGTCATTAGTCAGATCCTCACTGTGTATCACTCCGAGGAATCCATGGAGGAATGCATATCTAGCCTAAAAGGAGATACAGAAGACCTGTCCAAGCTTTTGGATGCCGTTGTTTCTCAGATTGACGTCCTTGCCGCCTCCAAACCATATTTATTTGTTTATGACTATGCTGTCAATACACAGGACAATTTGCATGGTGAGATCAACAATATTGAGGAGGAGGCATCCTCTAGAAGTCTTAAATCCACAGCCTTTGACAAACTATGTACTGAGGAGTTTCAAACTAAAGCCTCACATATGGCTGGTGGGATCCTTCAATCAGGGTTAATTGGCATTGTAAATACCAACCTTGATGGTAGAAGTGCAGACATTTGTGCAGAGTCCAGTAATGAAAGTGATGTCAAAATCCTTCAGAAGAGTGGAACTCCATCTTTGTTCACCTCTTCTCTGCATACCAATTCTGCAGCATCCAACATCGTCATAAGCATCACTAAAGACCTTAATAGCTTCACCCAGATGACTAAAATGTCTGATGCTTCAGTGTCTGGCCAGTTAGAGAGATCCCTGTCAGCTTCAACCCTTCCTGTCAGTGTTCACAACGGGGCCAATGTGAAAGGAAATATCATTTGGCCAGGCACTGTTAACCTGTTCAACAATGTGTTCACCAAGGTCAAGGATTTTTTTGCCCAGCAACAACCGGTCCTCCTAGACAATGTGGTTGAGGCCCCCAAACATGCCGAATCCATATGCAGAACAGCTACTTCTACCCAAATGACTTACAGTGAACATGAAggcagccagaccagcatggtaaATTATTCCAAAACCTTAATTAGTCAGACTCTGATGACAATCCAGAGGAGAGTGTCTATGTCAGAGAGGATGAGCACCTCAGAGAAAGGCCTCTTGACTCGTTCCATCGTGGGCTCCATGTTGGAGGATGTTGACATGGTGAGAACTGATGGAAATGAGATACACCGGCCATCCTCCTCAAAGTCCTCCCTGTCCATCACCTCTGCCATGACCAGAGGGTCCCAGAGTGATTTTACAAATTCTCTTCCAGGCACTCCAGTCCCCAATGAATGGCCTGTTGAAATCTATTGTCCTATCATTAGGAGTTCGGTCATTGATATGAGTGACTCCTCAACTCATTCACAAGGGTCAACAAATTACACAAGGCAAACCATTTCTGCCATAGTTGACACTGTTATGGAGGTCATTCCAAGAGAAGATACGGAACACATAGCAACTGCAGATGATGTCATTTCTTTTACAAGGAGACTTGCGAGACTCAGCCCCAGGGACGGTCTTCAGAACTTCTCACATGAGCTCACTGACAAAGTTTATGAGCTCATAAAAAGTCACAACACCCCCCAGGCTCTTTTTGTGCCAGCTGGCAAGAGCGTGTCTGACTCTATTCTTTTGAAGCTGAAGACAGGATTGAATGCTTCTGAAGAATCCAGGGAGTTTCCATCTGACCTTGTGTACTCCTTTGCTACGGAGTCAATAAAACGTCTGCTACAGCAGATTGTCTTCTGGCTTCCTCCACCAACACAAGGATCCGATTTCTGCCAGACTGTCATCTCTGACGGTTCTCTGCAGGACACAAGTCAGCTTATCCCGAGCTCTTCTGCCATCTCCATTAGTTCCTCACAGGTTTACTGTGACACAAAGAGCCTTTTCACCAATATAATGGTCAATCAGGTCATGGATACCTGTTCTGTGGCCTCCAGTTCATCAGAAGAATTATCAGAGTTGATGAACATAATCAATGGGTTGTCCCCAACTGATGCTGGAACACTTGACTCTGACAGACCGGCTCTCATGACCACTAGCCGTCAGTCTAGTGCCAAATCATTGCCTAGAACCTCTCTGTCTGGCAGCAGCACACACAACGGTGGAACTGTGGATATTCAAGTTTTAGGAGAGGTGGAATCCAAGATGGACAACAAAGATCTGGAGATGTGTAGTGTCTCTGTGCATCCATCAACTCCATCAGCCATGGACTCTGATACACATGCATCATTTGACTCCACTGGCAATGACTACACCTCTTTGGTACTTTTACTGATTGTTAGATTGCTGTCAATGATCACCCCTATCACATTACTGGAATCCTCTGACATTGGTGAAACATCAAGAGTTCTCACAAAGAGGATTCTGTCTGAGTTCTGTGGCACCTCAGGCCTTGAACCAACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAACTACTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACCCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcagcTCTCTCTGTGGACTCAACCCAAAGTGTACAAAGAAGGTCAACAAGAAGAACCACTGCATTCCAACACCTTCCCAGAACCAGAACCCTGCCGTCAGTGAAACAGcaATTGTCAAAGATCAAGAATCCTGCCAAACAGAGAGTGTATGCTCCACCAAGAAGAAACCAAGGAAGCGTTCGCTCATTTCCAGGATGTTTTCAGCTATAGGCAAAGCCTTTTCCAGTCCCTTTACTTCCTGCTATAAAAAGAAGAGCACCTAATCTATAtttcaaaataaatatttgaaaTTAACATAATTGCATTAATTATTAATGTTGAGTGTTTTTCATTATATATTATTGGatgatataaagtgtagtagtagAAGTTGTATAGTTGACTATATTACTTTTACTTTTaagatacattaaaaaaaataagaatatgtgcacttctaggtacagttgaagtctgatgtttacatacactttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctgttagaggaattctaaattcctctgtATTATTTCCCAATCAGAATTCATTACTCTGTCAATGCATTCTAAAGGGATTATAAGACCCAATATTTtttataagaatggacagagccccggtcttaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65538 lncRNA downstream 1554 53759692 ~ 53760058 (-) True G58954
TU65506 lncRNA downstream 126646 53632654 ~ 53634966 (-) True G58926
TU65423 lncRNA downstream 163816 53597123 ~ 53597796 (-) True G58850
TU65419 lncRNA downstream 170149 53590934 ~ 53591463 (-) True G58846
TU65392 lncRNA downstream 198402 53562953 ~ 53563210 (-) True G58819
TU65705 lncRNA upstream 61650 53830747 ~ 53835745 (-) True G59104
TU65712 lncRNA upstream 87469 53856566 ~ 53917269 (-) True G59110
TU65783 lncRNA upstream 186218 53955315 ~ 53955541 (-) True G59172
TU65792 lncRNA upstream 202430 53971527 ~ 53971753 (-) True G59178
TU65811 lncRNA upstream 205108 53974205 ~ 53974501 (-) True G59196
XM_021605237.2 mRNA downstream 2874 53713713 ~ 53758738 (-) True LOC110525255
XM_021605039.2 mRNA downstream 377136 53373701 ~ 53384476 (-) True LOC110525089
XM_021605028.2 mRNA downstream 423128 53337030 ~ 53338484 (-) False LOC110525078
XM_021604990.2 mRNA downstream 451487 53299267 ~ 53310125 (-) True LOC110525034
XM_021605000.2 mRNA downstream 451491 53299267 ~ 53310121 (-) False LOC110525034
XR_005051393.1 mRNA upstream 9444 53778541 ~ 53780182 (-) True LOC118964330
XR_005051403.1 mRNA upstream 31932 53801029 ~ 53802670 (-) True LOC118964334
XM_036980333.1 mRNA upstream 44888 53813985 ~ 53822325 (-) True LOC118964895
XM_036980342.1 mRNA upstream 52960 53822057 ~ 53836588 (-) True LOC118964896
XR_005051406.1 mRNA upstream 71486 53840583 ~ 53841742 (-) True LOC118964340
TU65415 other downstream 172842 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 335296 53425964 ~ 53426316 (-) True G58718
TU65226 other downstream 423225 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other downstream 423225 53336609 ~ 53338387 (-) True LOC110525078
TU65118 other downstream 621308 53139458 ~ 53140304 (-) True G58565
TU65545 other upstream 22733 53791830 ~ 53797014 (-) True G58958
TU66641 other upstream 960034 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 1301295 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1381144 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1424200 55193297 ~ 55193723 (-) True G60614

Expression Profile