RNA id: XR_005051403.1


Basic Information

Item Value
RNA id XR_005051403.1
length 1176
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118964334
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53801029 ~ 53802670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaatctcagttaacttAGAACTAAAGTCTTgtgtaattggtcagctgcttgattatgttttggggccataaatgttaagagaagggattaagaGATGCTATAACTGTGACGTGgtaaggttggacccaggtgcagagaagagaccagaagaTGAAGCAGTGGTTCCAACCAGTGTCTCCACTGCTCAAGGGCCCACTTAACTGCCCAAAGCTCCCAGTTGCCTACATCGTAGTTGCCTTCCGCTGGCGAGACCTGCTTGGAGAGAAAGGAGCATGGGTGCAGTTTCTTGTCCTCCTTGTTCCACTGTGAAAGGACCACACCAGCTCCGGTGTCCGAGGCGTCCACCTCTACCACAAAGGGACGAGTTGGATCAGGATGAACGAAGATGGGTCCGGAGTTGAAACGTCCCTTGAGCTCTATGAATGCCCTGTCAGCCTCAGGATTCCTGCAAAAACCTGCTTCAGTGAGGTGGGACAGGGCCATACGTGTTCCGGAGGGGTTTTTGGAGAAGATCAGGATGTCGTCGAGGTGAACAAAGACGAACCGGTTCAACATATCCCTAAGAGTGTCATTGATCAATGCCTGAAAGACTTCTGATTTTAAGCGTTGCGGAggtccagtttggtgaagaatTGGATTCTTAGTGCCAACTCCGAGGCGGCGGACATCGGGTGTGTTGAACATGAGTGGAAATGAAACTCCAGCACACCGGTAGCACTAAAGATGTGTGAGTATAACTTTTCCGGGTGAGTTGAACCCGCCTGTGGGTGCAGTGGGGATATTCCTGGGAGGTCTACTGATGAAGAGGTATAAGCTTGGCGTTGTGTCTGGAGCCCAGCTGTCTTTCATCACcgcctacctcctcctccctctgcagtCTGGCACTAAGTGTGACAATGTTCAGGTGGCTGGTCTGACCATGTCCTACAATGGGTAAATATGAcatctgattggttggttggtgggtgggttGATAAAAACAAAAGTTTTGATCAGTGGAATATGAGTGAGTTAGACTAAAGTACACATGGGCTTGTGCCGGGGCTCCCTCTTGTGGGAATATACAGTATGGTTGTTactgggtgtacaaaacattcacagggatgccggcccatgttgactccaatggctcccacagttgtgtcaagttggttgtatgtattttgagtggtgga

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU65538 lncRNA downstream 40971 53759692 ~ 53760058 (-) True G58954
TU65506 lncRNA downstream 166063 53632654 ~ 53634966 (-) True G58926
TU65423 lncRNA downstream 203233 53597123 ~ 53597796 (-) True G58850
TU65419 lncRNA downstream 209566 53590934 ~ 53591463 (-) True G58846
TU65392 lncRNA downstream 237819 53562953 ~ 53563210 (-) True G58819
TU65705 lncRNA upstream 28077 53830747 ~ 53835745 (-) True G59104
TU65712 lncRNA upstream 53896 53856566 ~ 53917269 (-) True G59110
TU65783 lncRNA upstream 152645 53955315 ~ 53955541 (-) True G59172
TU65792 lncRNA upstream 168857 53971527 ~ 53971753 (-) True G59178
TU65811 lncRNA upstream 171535 53974205 ~ 53974501 (-) True G59196
XR_005051393.1 mRNA downstream 20847 53778541 ~ 53780182 (-) True LOC118964330
XM_036980320.1 mRNA downstream 26485 53761612 ~ 53774544 (-) False LOC110525178
XM_036980313.1 mRNA downstream 26486 53761612 ~ 53774543 (-) False LOC110525178
XM_036980325.1 mRNA downstream 31932 53761612 ~ 53769097 (-) False LOC110525178
XM_021605237.2 mRNA downstream 42291 53713713 ~ 53758738 (-) True LOC110525255
XM_036980333.1 mRNA upstream 11315 53813985 ~ 53822325 (-) True LOC118964895
XM_036980342.1 mRNA upstream 19387 53822057 ~ 53836588 (-) True LOC118964896
XR_005051406.1 mRNA upstream 37913 53840583 ~ 53841742 (-) True LOC118964340
XM_036980360.1 mRNA upstream 51190 53853860 ~ 53868089 (-) False LOC110525263
XM_036980365.1 mRNA upstream 51190 53853860 ~ 53868090 (-) True LOC110525263
TU65545 other downstream 4015 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 38133 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 212259 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 374713 53425964 ~ 53426316 (-) True G58718
TU65226 other downstream 462642 53334724 ~ 53338387 (-) False LOC110525078
TU66641 other upstream 926461 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 1267722 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1347571 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1390627 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1400747 55203417 ~ 55203742 (-) True G60624