RNA id: XM_036989706.1


Basic Information

Item Value
RNA id XM_036989706.1
length 2698
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110525273
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53886920 ~ 53903845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGggttacctgacttgcctagGGAGGAGGAGTCTATCCAGCTGGACGGGCTGAACGCAGCTCAGATAAAAGAGATCAGAGAGAAATCTGAGAAGCATGTCTTCCAGGCAGAGGTCAACCGCATGATGAAGCTTATCATCAACTCACTCTACAAGAACAAGGAGATCTTCTTGAGGGAGTTGATATCCAACGCCTCTGATGCTCTGGATAAAACCAGAATGATGTCTCTGACCAACGAGGATGCACTGGCAGCCAATGAGGAGCTCACCATCAAGATCAAGATGGACAAAGAGAAGAACATGCTCCACATCACTGACACGGGCATCGGCATGACCAAAGAGGACTTGGTCAAGAACCTGGGTACCATCGCCAAGTCGGGCACCAGCGAGTTCCTCAACAAGATGACGGAGATTGAAACCGAGGGCCAGTCCACCTCTGAGCTTATTGGCCAGTTCGGTGTGGGCTTTTACTCTACCTTCCTGGTTGCCGACAAGGTGATCGTGTCTTCAAAGCACAACAACGGCACACAGCACATCTGGGAGTCTGACTCCAATGAGTTTTCTGTCATTGAGGACCCTCGCGGGGATACGCTCGGCAGGGGCACCAGCATCACGTTGGTGATGAAGGAGGAGGCTACAGACTACCTGGAGCTGGAAACCATCAAGAACCTGGTCAAGAAATACTCGCAGTTCATCAACTTCCCCATCTACATCTGGGCCAGCAAGACAGAGACTGTTGAGGAGCCCATCGAGGACACCGAGGTGAAGGATGACACTGAGgatgaggtagaggtggaggaagaggaggacaagcCCAAGAAGGTTGAGAAGACCGTGTGGGACTGGGAGCTGATGAACGACGTCAAGCCTATCTGGACGAGACCAGCCAAAGAAGTAGAGGAGGATGAGTACAAAGCCTTCTACAAGACTTTCTCTAAGGACACAGATGAGCCCCTCTCCCACATCCACTTCACAGCCGAGGGTGAGGTCACCTTCAACTCCATCCTGTTTGTCCCCGTTGCTGCCCCCAGGGGCATGTTCGACGAGTATGGAACCAAGAAGAACGACTTCATCAAGCTCTTTGTCCGTAGAGTCTTCATCACTGATGATTTCAATGACATGATGCCCAAATACCTGAACTTTGTCAGGGGAGTGGTGGACTCTGATGATCTGCCACTGAATGTGTCAAGAGAAACCCTGCAGCAGCACAAGTTGCTCAAGGTCATCCGTAAGAAGCCGGTGCGTAAGACCCTGGACATGATAAAGAAGATTGCAGAGGAGCAGTACAATGAGAAGTTCTGGAAGGAGTTTGGCACCAACATTAAACTGGGTGTGATCGAGGACCACTCCAACAGGACACGTCTGGCCAAACTGCTGCGTTTTCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAGCAGTACGTAGAGAGGATGAAGGACAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCCGCAGGGAGGCTGAGTCGTCTCCCTTTGTAGAGAGTCTGTTGAAGAAGGGTTATGAGGTAATCTACCTGACAGAACCAGTGGATGAGTACTGTGTCCAGGCCTTGCCAGAGTTTGACGGTAAGCGCTTCCAGAATGTGGCCAAGGAGGGCATTAAGTTTGACGAGAGCGACAAGGCCAAGGAGACCAGGGAGGTCCTGGAGAAGGAGTACGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTCAAGGACAAGATTGAGAAGGCTATCCTGTCCCAGAGGCTGACTAAATCTCCCTGTGCCCTGGTAGCCAGCCAGTACGGCTGGTCTGGTAACATGGAGAGGATCATGAAGGCACAGGCCTACCAGACAGGGAAAGACATCTCCACAAATTATTATGCAAGCCAGAAGAAAACATTAGAAATCAACCCAAAGCACCCTCTCATCAAGGAAATGCTGAAACGCATTTCTACTGATGCCAAGGACCAGACTGCCTCAGACCTGGCCATGGTGTTGTTTGAGACGGCCACGCTGCGTTCAGGCTACCAGCTTCAAGACACCAAGGCCTATGGAGACAGGATTGAACGCATGCTGCGGCTCAGTATGAACGTAGATCTCAACGAACAGGTTGAGGAGCCAGAGGAGGAGCCTGAAGAGGCGGCAGAGGCTGAGGAAGAAGAAGAAATTCAAGATGAGGATGAAGTGGTAACAGATAAAGATGAATTATAAAGCATTAAATGAGTGTGGGTGTCATGATGGACCTATCCTGGAGCTGAGCCACAACCAAGACCACCCATGGCTAACCAAGTCCTAGCCTTGAAATTCAGACTGAATTTAGCTTCATTCTGTACGTTTCTCTCCATTATCTATGAATTAGTCATTACGACAGTAAAACCATGTGATTCATTCTGGATAGCCAAGACCACCACCAGCTGGCCAAGAACACCAACGGTCAGTGAAGACTAGCCAGGTCCCAGATCGGTTTGTGTGGTCTTGCCCAACAGATCAGGCTAAGTCAAGACATTGATGGCCATTGGCCACCTTTCACTCACTCGGGAAGGTCCTGATCGGATTTTTTTATAAGGCTTTGGTTTTGTTTTGTTGCGTTCCTCATGATTGTAAATTTGTTAATATTTCACTGAGCTGTCTTTGGGAAAGATGTGATCGATACTGTCACTTGATCccattaaataaatatttattggGAAAAGAGTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65552 lncRNA upstream 32505 53814648 ~ 53854415 (+) True G58964
TU65551 lncRNA upstream 73491 53813074 ~ 53813429 (+) True G58963
TU65550 lncRNA upstream 74551 53812083 ~ 53812369 (+) True G58962
TU65488 lncRNA upstream 121508 53765180 ~ 53765412 (+) True G58909
TU65486 lncRNA upstream 126050 53760659 ~ 53760870 (+) True G58907
TU65611 lncRNA downstream 51000 53954845 ~ 53955147 (+) True G59016
TU65584 lncRNA downstream 63228 53967073 ~ 53969523 (+) False G58993
TU65585 lncRNA downstream 63997 53967842 ~ 53969548 (+) True G58993
TU65582 lncRNA downstream 65777 53969622 ~ 53971233 (+) False G58992
TU65583 lncRNA downstream 65777 53969622 ~ 53971184 (+) True G58992
XM_036980277.1 mRNA upstream 181499 53632831 ~ 53705421 (+) False LOC118936380
XR_005052132.1 mRNA upstream 200822 53685401 ~ 53686098 (+) True LOC118964886
XM_036980232.1 mRNA upstream 201532 53632831 ~ 53685388 (+) False LOC118936380
XM_036980268.1 mRNA upstream 203140 53632831 ~ 53683780 (+) False LOC118936380
XM_036980210.1 mRNA upstream 206568 53632831 ~ 53680352 (+) False LOC118936380
XM_021605298.2 mRNA downstream 10083 53913928 ~ 53938476 (+) True LOC110525287
XM_036980382.1 mRNA downstream 51950 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA downstream 51986 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA downstream 52059 53955904 ~ 53966503 (+) True LOC110525297
XM_036989711.1 mRNA downstream 140968 54044813 ~ 54089850 (+) False LOC110525327
TU65446 other upstream 215647 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2435985 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3802924 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4993008 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5503663 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 84295 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 141004 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 817343 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2001663 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2115631 56019476 ~ 56030371 (+) True G61284

Expression Profile