RNA id: XM_021605298.2


Basic Information

Item Value
RNA id XM_021605298.2
length 3055
RNA type mRNA
GC content 0.39
exon number 11
gene id LOC110525287
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53913928 ~ 53938476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGCTGAGTCCAAAAAATTCAGAGCCATTTTCATTCAGCACATTGAAAGGACTCTCTGCATTGCATGGGGATTATAAAACATTCCCCGGGCAATTAAGCGCATATCTCAgtaaaaaaaatatctttattttgTTTTGAGTAGAATTGAACAGAATTCTTTCATTTGTTGGAAgcacaaatatatacattttattcGTATTTCTCATAGATTTGACATCAGGAATGAGTATAGAAATTCCTGAAGGATTGACGGAGCTGTTGCAGAGCTTTACCGTGGAAGTGCTGAGGAATCAGCCGGGAGATTTGCTCGAGTTCGCTTTGCAGTATTTCACCCAACTGAAGGACAGTGAAATTAGAGGAGCCGCGTTTGGCAATGACCAAAATTCGGCCACGAGACCCAGTGGGAAAGCGGTCAATTTCATTGAGGAAGCCATGCAGATTGATTCTGaaaatggagaggaggagagtgacgaCGAGGAATTCACAGCTCCTGTGATGAGTCGATTTATTAGAAGAGCATCAGTGTGTGCGGAGGCATTCAACCCTGATGAAGACGAGGAGGACAAAGAGCAGAGGCTTTCCCAGGTGACCCATCCTAAAACAGACGAGCAGAGGCAAAGACTACAGGAGGCCTGCAGAGATATCCTCCTGTTTAAAAACCTGGACCCGGAACAATTTTCCCAAGTACTTGATGCCATGTTTGAGAAGTTATTTGAGGTAGGAGAGCACATCATAGATCAAGATGACGATGGGGATAACTTCTATGTCATAGAAAGagGGATATTTGATATCTGCATGAGGGTTGATGGCATTGAGAAGACTGTGGGAGCCTATGATAACCGGGGGAGCTTTGGAGAGCTGGCCCTGATGTACAACACCCCCAGGGCTGCTACCATCATAGCCACCTCGCCCGGAGCTCTCTGGTGCCTGGATCGTCTGACATTCAGGAGGATCATTGTAAAGAACAACGCGTTGAAGAGGAGACTTTATGAGGAGTTCATTGAATCACTTCCATTCCTTACATCACTAGAGCTTTCAGAGAGAATGAAAGTAGTGGACGTGCTGTCTTCTAAACCATTCAGCGATGAAGAACAGATCATCTCTCAGGGTGATCTAGCAGATTGTTTTTATATAGTTGAATCTGGTCAAGTTAGAATCACCATGAAAAGAAGCAGGACGAAAAAAGACCAAGAGGATGAGGAGGTCGATATAGCCACGTGCTCAAGAGGGCAGTACTTTGGAGAACTGGCTTTGGTCACGAACAAACCCAGAGCTGCTTCAGCTTTTGCTGTGGGAAGTGTTAAATGTTTAGTTATGGATGTCCAGGCATTTGAGAGGTTGCTGGGCCCCTGCATGGACATCATGAAGAGAAACATTGCAAATTACGAAGATCAGCTGGTCACGTTGTTTGGAAATAGCACCACTGACATTGATGGAAAAAACCTATGAAATCCAGAAACGGAAAAAAGACTAAGTGAGATGCACTATGAAGAAGATGTGAAAAACCAggataacactttacttgacacccagcatcATAACACGTTATGACATGGTCATAAACATGTCACATGTCATAAAAGCTGACGTAACATGTAATAACATGGtcataatactgtcatgacccatataattacacctgttgtgacatatattgcgttattttatggctggttatgacacctacataagaatgtttttgttttttccctgccaagaagcttccttttttttgttgtctctGTCATATTTTAAACAAATTGCAGAAAATGCACTTTATGACACTGTAATGAAGCATTATGCCCATCCTGTGTCATTTTAATCGGACTAAGAAAATACTCTTTATGACCCTGTGAAGAAGCATTATGACtatcataatcatataagccagacaggcctatcacgtacatgcccttatgtcagtcatcagtcaaaagggtgtcttgtcctgctcctgaaatctgctcctgtaTTCAACTCAGTCATCAGCAACAAAGCATTGGGTAGggatgtctgacatcaatgtgtggaCAGTTACAATGATAATTGAATATGGTCAATTTCATAAAATGATAtataacataaacatactgttgacaagcaagctatggtgtaatggaatgttttgccttgtgtggtaggttttgtgggttttaacactcttatgtaggtgtcataaccagccataaaataatgcaatatatgtcacaacgggtctaaatatgtgtcatgacagtgttacaGCTGTTATGACATAATGACGCTGGGTGTCAAATAAAGTTGCCGAAACCAGTGGGTAGTATTGTTTTCCGTTCAGAAAATGTGAAACACAGTATGTTACCATTAGTGATTTAGATAGGGTAAGACAAAATGTGTACGTTTGATTCCAGACGACACAATGGTATGTTTTAAAGGATTTTGCCTGGGAGTAATATTTTTATTGAAAGAAAGATCCGTGTTAAatccaaaatgtaaatgttaatTTGTTCTGTCCTCAACTTTTTCCTCTTAGATTTTCTACAAGTGTGCATTTTATTGAATTTATCACATTTTGACACTGTTTGTATAATGATCACTATAACGTTATAGATGATATATAAATTGTCCTTTCAAATATTCTGATATCATATTTCATCATGTGCCAAAGGCCATTCAAATCCTTGTTAGATTATGATGGTGTCATCATAACGTCACAGTAATTATCGCATTTCACAGTTAAGAGTTTCTTGTTAATAATTTGATATTCTCATGTTGACGTATCTTTTAGCAAGGGGGGGATCATGCATTTAATAGGATACAGAAGGGAACTAGGTCCCTTTGTTTCAACATGGTGGTAAGAACAAAACAATCTTGTCATCAGAAAATAAGGGAAAAAGAGATCTTCTTTCTACATCAGAGAATGTAAATTTACTTATGGAAGCAGTAGTCCTTTTTTTCATAGCAAATGTGTCTCCTCAAACATGTGATTCAACTCCCTGAACATGTCTGTGAACAAACTGTAATACATTATTCACTGTGTGCTTTAAGAAACAGTTAATAATGCCATACATTTG

Function

GO: NA

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65567 lncRNA upstream 10334 53903143 ~ 53903594 (+) True LOC110525273
TU65552 lncRNA upstream 59513 53814648 ~ 53854415 (+) True G58964
TU65551 lncRNA upstream 100499 53813074 ~ 53813429 (+) True G58963
TU65550 lncRNA upstream 101559 53812083 ~ 53812369 (+) True G58962
TU65488 lncRNA upstream 148516 53765180 ~ 53765412 (+) True G58909
TU65611 lncRNA downstream 16369 53954845 ~ 53955147 (+) True G59016
TU65584 lncRNA downstream 28597 53967073 ~ 53969523 (+) False G58993
TU65585 lncRNA downstream 29366 53967842 ~ 53969548 (+) True G58993
TU65582 lncRNA downstream 31146 53969622 ~ 53971233 (+) False G58992
TU65583 lncRNA downstream 31146 53969622 ~ 53971184 (+) True G58992
XM_036989706.1 mRNA upstream 10083 53886920 ~ 53903845 (+) False LOC110525273
XM_036980277.1 mRNA upstream 208507 53632831 ~ 53705421 (+) False LOC118936380
XR_005052132.1 mRNA upstream 227830 53685401 ~ 53686098 (+) True LOC118964886
XM_036980232.1 mRNA upstream 228540 53632831 ~ 53685388 (+) False LOC118936380
XM_036980268.1 mRNA upstream 230148 53632831 ~ 53683780 (+) False LOC118936380
XM_036980382.1 mRNA downstream 17319 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA downstream 17355 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA downstream 17428 53955904 ~ 53966503 (+) True LOC110525297
XM_036989711.1 mRNA downstream 106337 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 304345 54242821 ~ 54249212 (+) True LOC118964411
TU65446 other upstream 242655 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2462993 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3829932 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5020016 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5530671 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 49664 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 106373 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 782712 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1967032 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2081000 56019476 ~ 56030371 (+) True G61284

Expression Profile