RNA id: XM_021605334.2


Basic Information

Item Value
RNA id XM_021605334.2
length 2995
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110525297
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53955795 ~ 53966503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGACAGgtttggtaaaataacagatttcTAAGAAACAAACGTCTAACTAATCTTGAGAAATAAGCAGTGTAATTTTCTTTATTCAGCGCGTATAGTTTGGTGGAGTGGGACAGTTGTCATTCTACCGTTCGATGTCGATTGACAATTTATTCTAGATATATTTTGTTCATTGTTATGTTTGTTATTTTGGTTGTAACATTAGCTTGCTAGGCTAGCAGCTTGCTAGCTATATATCAATATAGTGACAAATACAGCCTGCTTTAAAGGTAGTAAAACAATGTTTCGGGAAAAAACTTCGGACTCGATGTACATTTTCGGTTCATTCATTTGACAATCTCGAACAGTGGGGCGCAAGCGGTGTCGTGTCTGAACTTGTTGACATTCTTTTGTTTACAATGGCTGTCTACAGACTTTCCAGCTGACATGGCGTAATATGTTATGGGAAGTTAATAAGACTGAACAAGTTGAGGAAAACAAGATGGATGCAAATAGAATGGAAGACTCTTTTGATCTTCTGAAATGCAATGAGGCTCTGTCCTCATCACCTGGCTGCCCCCCTACTCCCATGGAGTATGATGACCTGCCAGAGCTGCAGGAGGTAGAGGAGAACCAGTCCTCTCTGGTGCTGTTCCATGTGGGAACTGGGGTGTCACATCAGGACTGTATAGCTGGTTACCCTCACACCAATTGGCTGACTGAGCTAGCTAACATCGCCACCAGCCCTCAGAGCCCCCTACTGCAGGAGCCTCCTCCCATCAAGAGGTCGTCTCCTATGCACATCTTTGCCACCAGTCGTAGTTTACATTCTTACGCCCGACCTCCCCTGGCTAGCAGTGCACCCAGCCCCTCTAGGGGTCACCTTAGGGAGCGCAGCAGACGTGTCAGAGCCAGCAGTGAGTCAGAGTCTGGTGTGTTCTCTATGTCATCATTCTCTGATGATGAGGACATGGGTTGGTCTAACTCCTGGCCCTTAACTGCCTGGCACTGTTTCCTGAAAGGCACCCGGTTGCGGTTCCACAGGGGTTCTAACAAGGAGTGGCAAGAGGCTGAGGACCTGGGAGACTCTGATGACGAGTCAGATGATGATGAGAGAATAATGCCGTCCACTGCCCGAAAGAGCTACGGTTCGGAAGGTCTGAAGCTAGTGGCCCACGAGGAGAACGTGTCGTACGGCCAGGCTGTCCTCAAACTCACCTTTGACCCCGGCTCGCCAGAAGATGGCCTCTTAACGGCGGAGTGCAGATTTGATCACCCCTTTTTTGTGAAAAACAAAGGCTGGTCCTCGTTCTATCCCAGCCTGACGGTGGTGCAGCACGGTATCCCCTGCTATGAGATGCAGGTGGGGGACCTATGTCTTCCTCCAGGCCACAGAGACTCCATAAACTGTGACGACTCTGTTGTCTTCGACACCTTCAGGAGTTATGACTTCACCCCTCTGGACTCTTCAGCTGTCTATGTGCTGAGCAGCATGGCCAGGCAGCGTAGGACCTCCCAGTCCAGCAGTGGCGCTGTCTCCCCTGACCCAGAGAAACTCTCCAGTtccttccacccctcctccaCCAGCAAATCAAACAGGAGCAATACCTCAGGGACAGCCCCTGGCGGGGCCACACCCACCAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTCGCTAAGAAGTACAGGTTGGAGTACACACAGATGTACCCTGGGAAGGATAACAGAGCCATCAGTGTAATCCTGGGTGATAAGTGGAAGAAGATGAAGAACGAGGAAAGGAGGATGTACACCATGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCAggGTCCCAGCACCAATAGATGGCCTGGTGAACAGACCGACCAGGTGAACAGACCGACCAGGCGACCCCACTAGCctctctagcctggtcccagatctgtttgtgctgtatagccaactaTGGTCGTTGGACcataagacagcacaaacagacctggaaccaggctactctctctctctgctcacctGTCAAATTGATGAGACATAACTGTGATGCTGAATACACTTGCTTTTATAACTAAGAGACCTTATAGATAGGCCTACAAGATAAAACAACAACTATGAACTATATATTAAAAAGCAGGTCATAAAGTGTAACTAACCGTGCTTATATTTTCTTACATTTTAAAATGACAAAAGATGCCTTGTTATTCCTCTATAAAAAAAGGAAAGGCTCAGTTTTATTTCTTCAGGTAATTTCATATTTCGAGGCATGAAACCTTGAGatcagggttgcaaaattctggtaactttccaAAGAttccccaggttttccagaaattcaGGTTGAAAGattcccagaatcaggagggTATAAGCAAGAAAtccagaatcctccaaccaggaatTCTGGAAAACTTGAGAATTTTGGTAGAAATACTGGAAATTGAGAATCCTACTTGAGACCCAGTGGTGCTAAGTTCGGTTAAGGAAGGAGGAGCAGTGATACAAAAGTTATATTTttaattgtaaaataaataaggGGGATTTTAAATAgctttggtaacactttattttaagggtcCATAATAAAGCATTTATAAGGCATTTACAAACCGCTTGCTCATCATTTATTAATcatgcaggaatgtctaccaatggcatgtccatctttttgtgagaaattacactggtcactcaaaatatttataaaatattaaTAAAGTATAAATAGTGCTCACTGGACTGCAAAAATACTTTACTAATTATTAGTAAATGGTTTACAAATGTGGGcgtaatgattaataaatggtgACCACACAATTTATAACTGCCTTATTAAATGGTTTAATACGGAACCTTAAAATTGTGTTTTTTCTCTTCTCAGCTGTAGTTCATATTGACTTATATTTGTACAACTCAATATATTGCACAGATTGATAAAGCCTTTCATGCATTGTGTCATacagtacatgaccaaaagta

Function

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65611 lncRNA upstream 757 53954845 ~ 53955147 (+) True G59016
TU65567 lncRNA upstream 52310 53903143 ~ 53903594 (+) True LOC110525273
TU65552 lncRNA upstream 101489 53814648 ~ 53854415 (+) True G58964
TU65551 lncRNA upstream 142475 53813074 ~ 53813429 (+) True G58963
TU65550 lncRNA upstream 143535 53812083 ~ 53812369 (+) True G58962
TU65584 lncRNA downstream 570 53967073 ~ 53969523 (+) False G58993
TU65585 lncRNA downstream 1339 53967842 ~ 53969548 (+) True G58993
TU65582 lncRNA downstream 3119 53969622 ~ 53971233 (+) False G58992
TU65583 lncRNA downstream 3119 53969622 ~ 53971184 (+) True G58992
TU65616 lncRNA downstream 6885 53973388 ~ 53973959 (+) True G59021
XM_021605298.2 mRNA upstream 17428 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 52059 53886920 ~ 53903845 (+) False LOC110525273
XR_005052132.1 mRNA upstream 269806 53685401 ~ 53686098 (+) True LOC118964886
XM_036980250.1 mRNA upstream 275552 53666139 ~ 53680352 (+) False LOC118936380
XM_036989711.1 mRNA downstream 78310 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 276318 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 316436 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 316436 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 453919 54420422 ~ 54444532 (+) True LOC110525380
TU65446 other upstream 284631 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2504969 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3871908 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5061992 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5572647 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 21637 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 78346 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 754685 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1939005 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2052973 56019476 ~ 56030371 (+) True G61284

Expression Profile