RNA id: XM_021605344.2


Basic Information

Item Value
RNA id XM_021605344.2
length 4670
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110525320
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53989527 ~ 54019550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactgcACAGGTGAGaagcagtcaggcagtcagtcttAGAGCATGCGGTCAGTTATCAGTTCTAAACATGTATTCTGTATTCTCTATGCTTATGATCTATTTTCTTGCGCGCATATGACAAAAAAGTGGTTGTCGGAGCACGTCTCTGGATCCGCTGAGCCGGAGGCGCTTGTTTTAATCCTGCTGTAAGGACTCCTTGCGGACAGCACCAGCAGGTCAACGACTAAAATGACCGAGTTACTTCATGTTATGTTTCTCATGCTAGGGGCAGTGTAGAGCTGATTTCTTGCGTTTCAAATAGTGAATTATTAAGGACGTTAACGAAGAAAACAAATAGTTTCTCTATTGTCCATGCCTAACGTCATGACAAAAGTTACTTTGCTACAAAACGGATAGTAATATAATGGCATATGCTTTGCATTAAGTCGCGTACCCTTATCACTTGCTAATAATGCTTCATGTTTTTTTAATTCAAGGCAACAAAGAGGACATGCGCAAGAACCTGTTTTGTGGGGGAATTGGAGCAAGTTTCGGAAGGAATGTGTATCAACACCGGATTGCATTAGACTGGGAAATCATTAGGCTAGTCATCTCTAtcgggtctgaatgctttcttcCACCCCGGGCAGTTTGTCTTTGTACTGGGAACAAACTATTTCACTTTGTCTTTGTGCTGGGAACAAACAATGTTGATAATGTTTGATCATATGTACAGCAAGTCTTTTGTTCGAGGATCACATCACGCAAGGATAACAATGTAACGATTCATCAGGATTACAACGAATAGACAGACACATGTTTGCAATTTTTTCTTGGTGGAAACACATTTTCGGATAAACCGATGTCAATGCTTCCGTGAGCCGAGGACTGAGGAGTTACAAGTTGCGAAGCCCGCAAGTTATATTGCAGTTTCAAGTATTGAAGGAAAATATTGGACATCAAAGAAAACGTTTAGGCTAAGGTAACGTAATGCTATCAATAAGAATATGGTACTGATGTAGTGGGCAGTGGGTGCATGGCATATGCTAGCAATATACCAAGTTTGCAATTCAAATTTGCAGTAAGAATTCCATTGGAAATAGCCCATATTCTGTTAATTGTACGTGTTCAGGAATTGATCCTCACTACCACTGAAAACCATCTGCAATTCGATTTGACTGTTTTTATATACAGTCCATAGGCCTACTAAAAAGATGGACAAGATTCTTGGTAGAGTATAGAAAACAACACAGGACAGTTGTGTAATTGAGTTGTAAACATACCCAGCTGTATACTGCACTAGTTATTTTTTAAGAGAGTAGATAAAGCACTAAGGTTATTATCATGTTATAGTGCATGAACACATTCGAAATTAGTAGTTTGTATCAGTATTAGTGTCATTTGACACTTTGTGTCATTCAagtcactctttctctccttctcttattgaTTTGTTGGGTGACTAGAGTTGAGATTAGATGAAATAGTAGGGTTATGGTTCAGCTATTCAGAGATCACCTATTTGCACAACATGTGTTAACAAGTTGTGCTCAAGGGTAGCAGAATCACAATGATTTTAGGCAGTGTGCATATGATAGTCAGCTGATTTTTGATGTCAAAAGTGAGTCAAAATGTCGATGAAAGGCAAGGCACTCTTCACTTTCCAAAGTGAAAACAAAGAGGAGATCAGCATAAAGGAGAATGAAGAACTGGTTATCTTTGACAATAACTCTGTGGATGGATGGTTACAAGGGGAGAACAGTAAAGGACAGAAAGGTCTCTTCCCAGCCTCTTATGTGGAAGTAATCCGCCCTCGTTCCAACTCCAACATGACAGACTGCTCCATAAGCCCGGAGGGTTCTCCCGGCAATGGCTCCTCATATTTCCCCTCTACAGCAAACACGCCCTTTCACATGCAACAGGGTTACTATCACGATGACGATGATGACTGGGATGATTGGGATGACAGTTCCACAGTGGTGGACGATGATGACCCCAGTGGCACAAATGGACATTCCCATCAGAGCCCCCACTCCAACAACCCCAATGTCCACTATTGTGCCAAACCTTACATGGAGAGGCAGGACAGCATCTCCAGCTCGCGGAAGGGCAGTATGGTAGGCAGGAACTTGAACAGATTCTCCAGCTTTGTCCGCTCAGGGGTGGAAGCATTTGTGTTGGGCGATGTGCCCATGAACGCTAAGATAGCCGAGTCATACACCATTGCGATGGGCCCCAAAGGGCCTCAATGGAAAGAGAGCCCCACACCTTTCTCTTGCTCCATCGAGGACCCCACCAAGCAGACCAAGTTCAAAGGCATCAAGACCTACATATCTTATCGGGTGACCCCGAGCCACAATGCGAGGCCTGTGTACCGGCGTTACAAGCACTTTGACTGGTTGTACAATCGTCTACTGCACAAGTTCACCATCATCTCGGTACCCCACCTGCCCGAGAAACAGGCAACGGGGCGCTTTGGGGACGATTTCATTGAGAAGCGCAAAAGGCGGCTGATTCTCTGGATGGACCACATGACCAGCCATCCGGTCCTGTCGCAGTATGAGGGCTTTGAGCACTTCCTGATGTGTGCCGATGACAAGCAGTGGAAGCTGGGAAAACGGCGGGCGGAGAAGGACGAGATGATGGGAGCCAACTTCATGCTTACCTTCCAGATCCCCAACGAGCACCAGGACCTGCAGGACGTGGAGGAACGTGTGGACTCCTTCAAGACCTTCACCAAGAAAATGGACGACAGCGTCATGCAGCTGACGCACGTGGCCTCGGAACTGGTGCGGAAGCACCTCGGTGGCTTCCGGAAGGAGTTCCAGCGTCTGGGGAACGCTTTCCAGAATGTCAGTCAGGCGTTCATGCTGGACCCTCCCCACTGCTCGGAATCCCTCAACACTGCCATCTCCCACACAGGACGCACATACGAGAACATTGGTGAAATGTTTGCCGAGCAACCTAATTACGACCTCTTCCACATGCTGGACAAACTGTCGCTCTACCAGGGCCTCCTCGCCAACTTCCCGGACATTATTCATTTACAGAAAGgTGCGTTTGCCAAGGTCAAAGAGAGTCAGCGGATGAGCGACGAAGGAAAGATGGACCAGGACGAGGCGGACGGAGTGCGTAAACGCTGCCGGACAGTGGGATTTGCCCTGCAAGCCGAGATTAACCACTTCCACCAGCGCCGTGAGGTGGACTTCAAGGAAATGATGCAGGCCTACCTCAAACAGCAGATAGCCTTCTACCAGCGTGTGGGCCAACAGCTGGAGCGTACCCTGCACATATATGACAACCTGTAGAGGCTGGGCCTATCATCATTCCAAACGTTATCCTTCTGATCCAAAATGGCCGCCCAGTTCAACAGGGCCTCCCCAGGGGTTGCCAAAAAATCCTAGTGAAAACAGAGACATGTCTATAGTTGGGAAAGTGTATAACTTTATTCTATTTTTTTCATGGTGGACCATTATAGTCACACAAACCCTGGCTTGAAAGAAGAGAGGGGTTGCTGAGGTTGCTGCCTTAGAAAGATGACTTTCTGCTTATTTTGGCCTGaatagacagaaagagggaaTGTACTTGAAGAGACTGGGGAAGCCAGTTTGTGTACTTCACGCAACAGTCACTTTCCAGGCTGGATTTCAAAGTCGAAATTGTTGGTTGCAAGGGACTGTTTTgaccaaaatgttattttttttattttatatgttAGCAACCAATCTCAATGTATTAAATCATTGGTGGCATTTAATCATTCTTTGTAGAGGGTCAAAGATAGGCATGTGTAGCCTTAATGCTTAGACAATTTTCTGTTGATGATAGAAACTGAACTCCATTGGTGTAATGTATGATAGCCATGTCAGAATAAGGGCTCGACTGCTCAGGGGTTCAGTGCAAACATGTTACATTAATGTATTTTCTTGAATTGGCTCTCCATACAAGCCAAGTTCCAAGAGGCAGCAGCTGCACTACATAGTTTAAGATCCTGTCCTGTGGTCCCTGTCAGTGCCTTAAGGAACCAAGCATTTGAGTGTGATTTTTGTAACAAATGTCTTCACCTGCCTCTGTTTTCCATTTGAGGAGAAACAGGCCCTTGGCTGAGTAGTTGAGTTTGCACAGAGGCTTTGTAACCGTGGACCATGGTGTTGAgtctgtgcgtgcatgtgtgattGTAATTTGATAGATTGCTTGTTCTTTCTGTTGTAAAAAACATTTGAAGTTGGAAGTACTTAATGTTACTTAATGTTACAATAAGAGGTACTGCATGTTGGTTCCAACCTTAAAAGTAACAATGGGAAATGCTTTTGTCTGGATAAGGACATTTCTGTGCATCCGCCAGAAACTCTAAATGGGAAGATGGGAAACTCCTTTCAATTCGTATTATTATATTCCTATTTAATTTACAAATCTCGTGACGTGCCTATGAGACATGGCTGTATCTAAGTGGATTTGTATTTAGATGagcctgctagctagctacatttaacTACTACAAACTCATTTAAATCacaataaataaaggttaacttaCTTGTTTTTTGCTGTCCATTGGCAGCATTTGACTTGCGAACATCACATGATCAGCATGTGAGCATGAGTCAGCAATATTAAAAAAGTACTTCCGGGTCCCCCATGTAATAGTACAAAACCATTcatgcttttttttttaacctttatttaagtca

Function

GO: NA

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65800 lncRNA downstream 1041 53987981 ~ 53988486 (-) True G59185
TU65796 lncRNA downstream 1737 53986539 ~ 53987790 (-) True G59181
TU65804 lncRNA downstream 4703 53984637 ~ 53984824 (-) True G59189
TU65808 lncRNA downstream 6253 53982902 ~ 53983274 (-) True G59193
TU65814 lncRNA downstream 13417 53975826 ~ 53976110 (-) True G59199
TU65794 lncRNA upstream 29398 54048948 ~ 54106163 (-) True G59180
TU65836 lncRNA upstream 34229 54053779 ~ 54112156 (-) True G59220
TU66259 lncRNA upstream 94990 54114540 ~ 54114892 (-) False LOC110525336
TU66261 lncRNA upstream 99102 54118652 ~ 54118876 (-) True G59626
TU66262 lncRNA upstream 100258 54119808 ~ 54120128 (-) True G59627
XR_005051434.1 mRNA downstream 115291 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 115502 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 115502 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 121437 53853860 ~ 53868090 (-) True LOC110525263
XM_036980360.1 mRNA downstream 121438 53853860 ~ 53868089 (-) False LOC110525263
XM_036980395.1 mRNA upstream 93589 54113139 ~ 54223986 (-) False LOC110525336
XM_036980399.1 mRNA upstream 93589 54113139 ~ 54223986 (-) False LOC110525336
XM_036980401.1 mRNA upstream 93589 54113139 ~ 54223986 (-) False LOC110525336
XM_036980403.1 mRNA upstream 93589 54113139 ~ 54223986 (-) False LOC110525336
XM_036980407.1 mRNA upstream 93589 54113139 ~ 54223986 (-) False LOC110525336
TU65545 other downstream 192513 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 226631 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 400757 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 563211 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 651140 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 709581 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 1050842 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1130691 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1173747 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1183867 55203417 ~ 55203742 (-) True G60624

Expression Profile