RNA id: XR_002473762.2


Basic Information

Item Value
RNA id XR_002473762.2
length 4408
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110525476
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55071579 ~ 55128270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggcgCGCCGCGTGCACTAACCAAACCGGGCCAGTGCAACTGAATCTGTCTGTGAGGGACAATTTACCCCCGACCGAGCCGCGTGAGCAAAACGATTCCGCGATTATTGTATAGGCTCCATTTCGACAAATGAACGGCTCAGATCATCTGATTGCATTGATTTAGGAGGGATTGTCATCCGGAAGCTATTCCGTAGCCTAGCCTACAGAGGGTAGCCTACCAGAGCTAGAGTGGATTGTGATGCGTCAGTGTGTTTGACGGCTTTTCACGTAGGCTATATGTACCTTTGAAGATAGTGCTGAGAATGTAACAGCCTATATTAAACCAGCTCATgggacagacaaacacagagttGTTATAGATTGAGAGAACTGAGCACCGTCAGCGCTGACACGCTCATCACTGTCGGCTTCCTCTGGTGTGGGTATTGAAtcgtgtctctctcttttctctcatcCTTCTTCCGGCATCACTGACGGAGGCTGCTGATGCTGCCGTAGCTCGTGAAAAAAATCTCTGTAGCAACTACCTGGACTGGGCTGTGCGTTATCTATAGCCCGCTAGATGCTGTGAATTATCCCGCAGGATTGTGATTTGGGCTATACAAGAAGGAAGGCATCATAGACATTGCGTTTCGTTTGCTCCGGTTTGACACCGTCACTGTCGTTATCATTGCTTAGGAAAGAGCCATAGGCTATTGCAAAAAACTGCTGTTCTATTAGCTATTGGAAGGCCTTATTATTTGATATTGATTTGACTCTTAATTAAAATGAGTAATGTGTTATGGGTAATATCCGAATAACAATCTGATATTTGCTGTGTTAAGGAGGTATTCCGGAGGCATACAAGTGACATGTGCCAGAAGCGATGTCTGACAAACGGTTAGACGGCCATACATAGCCTATGAGAAAGGTGGGAGGGAATTATTTCTCATATAGGCTAGTTCAGGAGTCGCCACATTCTCAGAGTTATCATTTAGGTTAAATAAAGGCACAAGCTTGCAGATTAGCTTTTGGCTATTCAGTTTATGCGCCAGTATCGGGGTGCGACCTCGTGAGTTGAATATGCTTGCCAGATGTTGCCTTTGATGTGATTCATTCAGTTGCATGGGTGCATAGGCTACTTTGGGTTGCATTTATTATTGCTCAACTAATTAATTAGTCAGTGCCCCCCCTTTGCTCATATACCTACTTTAATAGGCTTACCTACTTCATAAGAATACCGGGACTGGGATACAACACAAACTGTGCTACAATGATACCCGGATCGGCTGCGTCGATGCTCCCATCAATGTCTTCGGAAGACATTAAACTATACCAGCATAACTATGTCCGCAACTCCCGTGCCATCGGACTCCTGTGGGCCATCTTCACCATCCTGTTCGCCATCTTGAACGTGGTGATTTTCAGCCAGCCCTATTGGATCGGGGACGGCGTGGACACCCCACAGGCCGGCTATTTCGGCCTCTTCCACTTCTGCACCGGCGACGGGATCCAGAGGGAGCTCGACTGCACAGGGACCTTCACTGAGTTCGCTCAGATTCCTTCCACCGCGTTCAAGGCCGCGTCGTTCTTCGTCGGGATGTCAATGATGCTGGTGATAGCTTGCATTGCTTCTTTCACTCTCTTCTTCCTGTTCTCCACCACCACCGTCTATAAGATCTGTGGCTGGATGCAGGGGGCCTCGGgtGTGTGTCTGGTGATGGGCTGTATAATCTACCCTGATGGCTGGGACAGTGATGAGGTGCGGAGGATGTGCGGTGAGCAGACAGACAAGTACTCCCTGGGAGCGTGCTCCATGCGTTGGGCTTACATCCTGGCTATCATGGGGGTCCTGAATGCCCTCATGCTCTCCTTCCTGGCCTTCGTACTGGGCAACAGGCAGGATGGACTCATGACCGAGGAACTGCTGGCCGAGAGCAAGGCTGGGATGAAGTAGCATCAACATCCGCTCggagactttgtggctgtgttatctagtgaCAACCCAAAAGTGTCGGGAAATTTGAGACTGTGCGATAACAGTTACGGACAAGATTGAAGATAACTCAATTCCATTTGAGCAACAATGTCTTCAGAAAAGCTGGGAATGCCTAAAACATCCATAGgtgtgtTTCCTAGTGTGTGTGTTCACCGCTCATCACTCTCCAGCTTTTTACCCATCATCCCCAGATGGCTttgggagagagaagaaagagagagagagggggagaaaggagggaagaggaggagaaatggaTAGCTATGGAACTAGATGCCTCCACTCCATTCACACTTGCACGTTCACACTGTAATATTCCACACCTTACCCTCTAGtttataatatatactgtatctgcCAATGATATGTACATACGTGTGTCTTTGTTGTCCATCCTGCTCATAGTCCTAGCCCTATCGAGCGTCTCTACCCCACACTACTCCCTTATCACTGAGCCCGTAGAACCCCAGCAGAGACTGACAACCCTTACACAACTGATAATCAACCAAGGCAGGGACAGAGACTTTGACTGACCAACTGAAGACGTATGGATTATCTGCAAGAATGTGGATGGGTTGTACTATGTTGAAGTATTATACTGATACAAATACACAAACACGGTAGTACAGTTCACACATACATAAATGCACGTGGGggagcaaatacacacacacacacacacatacacactcatctAAAGTCACACGTGAATACATATCCTTAGACTTTAACCTTGTAATAAATCCATACGCTAACATGTTGAGCAACAGTAGATATTGTATATTAGTGTACCATGCCATCTCCTGAGTATGTGTTTATGTTTTAGTTGTGAAAAGAAGGAAATTACCTATTCTCATCTAATATTGGGTGTAAATTTACGATATCTCAAAATAATGTGTGAACTCTTACAAACAAAACCTatccctcctcctcattctccccctcttcctcaaaAGCCGTCTTTACTAGCGCACTGTTGTCTAACGTGAGTGGCTACAGTTACTGTATATAGATAATTAATTATAGTTTTACAAAGTTGGGGCTGAAATATATGTATAAATACTAAAATATAAAAGAAGCACTGTTGTTGGAATTCAGTTTGTTACTCCATTTCAAGCGTACGTCGTCGATGCCCAGCTCAGTTCGTTTTGCACACTACTTGCATTTGAGGAGAATCTCAATGTTTTGTAGTTTGTGGTATGGTATATTCTTATTCACTGTGATGGGGGAGGTATTTGACTGTATGTCTGCTCCATATCTTGTAGCTGTTGGGTGAATGCGTGTTTGTATGAGTGTGAAtgtaggggggtgggggtgggttggttcttctatccttgtggggcTCTAAAATCCCCAAAAGTCTCCATGACAGTAAAATAAGGAAAATTGTCCACCGGGGGGACACTTCCCATGTCCCCATGAGAACAAAGGCTatgttaggtttaaggttagggttatatttAGTGTTAGCGGTTAGGAGTTAGATTTTGGGTTAAGGAAAATATTATTTTTAATGGAAAtcaattttaggtccccacgaggatagaagaacaaaacctgtgtgtgttttttaaatgCACCTTTTTAATGTACCAACACACCAGCCTCGTCCCATAACGACTCTTATACTATATAGTCCTGAACATACAAATGTATATTTCCCTCTCTTTTGATCTCTCGCTTTCGCGctcactttctctcgctctttctccatctcattctctctattgcacactccctcgctctccccctttccagctgtctctctctttctatctctctctgtcatgtttTTATGAATGAGTGTATTTGTCAAATTAACCTTTTTAATGTAccatcaactctctctctctctcttccatgttTTTTCAGTATGAGTATGTTTGTTAAATGCACCTTTTTAATGTACCaacacaccagcctcatctcataACGAGTCTTATACTATGTAGTCAtgtacatatttatttatttccctcTCTTgatctctcactttctttctctctcatgtctcttttTCAGTATGTGTTCATAATTCATTATGGGGATGTGCAGGTAATATTAATTGTGGAGAGGGTCATATGtaataattgattgattgattaatctaGAAGGCCTGGTGAGGTTATTTAAGTCCTATACCTCCATCATGAGCTGAGGGGAGGAAGAGcaaaaagagggggaggagaaaaggGATGAATATGAGAAGGAAGAGGTGTGAGCTAATAGTGTTAATACTGTAGGAACGAAAGGCCTGTCCCAGCCTCTTCTGTATGTATTTATGTACCACcaatgtaaatataaatatattacaGATACCAAACATTAAGCAAATACATGGACGAGAAGGGTAACGGCAATGGAATAAACAAACTTATTATAAAGCATATATGAATATGATTAATAAAGATTTTCACTGTAGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67199 lncRNA downstream 1734 55069610 ~ 55069845 (-) True G60517
TU67187 lncRNA downstream 27456 55043855 ~ 55044123 (-) True G60506
TU67159 lncRNA downstream 55931 55011079 ~ 55015648 (-) True G60478
TU66763 lncRNA downstream 246734 54824634 ~ 54824845 (-) True G60097
TU66762 lncRNA downstream 247944 54823429 ~ 54823635 (-) True G60096
TU67265 lncRNA upstream 42145 55170415 ~ 55170726 (-) True G60580
TU67273 lncRNA upstream 51640 55179910 ~ 55180197 (-) True G60588
TU67308 lncRNA upstream 74770 55203040 ~ 55203262 (-) True G60623
TU67314 lncRNA upstream 77749 55206019 ~ 55206260 (-) True G60629
TU67315 lncRNA upstream 78131 55206401 ~ 55206635 (-) True G60630
XR_005052176.1 mRNA downstream 37320 54978911 ~ 55034259 (-) True LOC118964914
XR_005052177.1 mRNA downstream 105026 54963456 ~ 54966553 (-) True LOC110525471
XM_021605592.2 mRNA downstream 136935 54905357 ~ 54934644 (-) True LOC110525462
XM_036980594.1 mRNA downstream 199254 54830826 ~ 54872325 (-) True LOC110525455
XM_036980597.1 mRNA downstream 199926 54830826 ~ 54871653 (-) False LOC110525455
XM_036980645.1 mRNA upstream 616137 55744407 ~ 55801039 (-) True LOC110525505
XM_036980672.1 mRNA upstream 773627 55901897 ~ 56127796 (-) False LOC110525190
XM_021605162.2 mRNA upstream 773628 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA upstream 773628 55901898 ~ 56147404 (-) False LOC110525190
XM_036980680.1 mRNA upstream 773629 55901899 ~ 56000300 (-) True LOC110525190
TU67198 other downstream 680 55070392 ~ 55070899 (-) True G60516
TU66641 other downstream 334335 54729131 ~ 54737244 (-) True G59978
TU65545 other downstream 1274565 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 1308683 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 1482809 53588422 ~ 53588770 (-) True G58842
TU67257 other upstream 21971 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 65027 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 75147 55203417 ~ 55203742 (-) True G60624
TU68326 other upstream 704555 55832825 ~ 55833360 (-) False G61563
TU68495 other upstream 1025160 56153430 ~ 56153918 (-) True G61715

Expression Profile