RNA id: XM_021605162.2


Basic Information

Item Value
RNA id XM_021605162.2
length 5594
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110525190
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55901897 ~ 56147404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGACAGCCGACATCAGatgcttttttttgtttgttactgCAATAGCATAATAATACATGGAAAACGTTGTGGTGGAAGAGGATGACGACGAAATAAACGATTTGATGCTTGTTGCTTTAAATCTGCGCGTGCTCAATCTCAACTAGTCTATGCGCTATGAGCAATCTGGCGGTGCAGACTACAGAACATTCATTTGCGATTTTTTTTcctttccatccatccatccatccatccatccctcctctccgaACCATTAATCTCCCCTCCTCCAGACTTCACATCCGGTTCACCCGCTAGTAGCCTATCTTCTGTgtcttgcctgtgtgtgtgtgtgacggccTGATTCTCCACTGAGCTGTACTGCAGACCCCTACCTGAACGCGCTGCGTGCTAGACGGATACTACGCCTGGCGTGCATCGGTGATGGAGCTACCGTCGGCGCTCTGATCTGGTGGGAGCCGATCTGTATGACACAAAGGCCGGGATGAGACGATAGGCTATCGGATGGGCGCCTCGGTTTGGTGATACTCGCTCAACGATGTCCAAGAGCCTGACGAAAAAAAATCACTGGACCAACAAAGTCCACGAAGCGGTCGTCACCAGGAGCATAGAGGGAGAATTTGGCTTCGAGCTGAAGGGGGGCGCGGAGATTGGGCAGTTCCCCTACTTCGGGGAGGTGAAACAAGGAAAAGAAACAGTCCAGAGCGGCAAGCTGGCCCAGGATGAGTTGCTGCTTGAGGTCAACGAAACGCCGGTGGCCGGGCTCACCACCCGGGATGTTCTGGCTGTCATCAAACACGGCAAAGATCCGATCCGCTTCAAGTGTGTCAAACAAGggggcaTGGTGGATAAGGACCTCCGGCACTACCTCAATCTGCGCTTCTCCAAGGGATCCGTGGACCACGACCACCAGCAGATCATCAGAGACAACCTCTACCTCCGCACCGTACCCTGTACCACCAGGCTGCCAAAGGAGGGAGAGGTGCCGGGGGTTGACTATAACTTTGTGAGCGTGGAGCGCTTTATGGAACTGGAGCAAAGCGGAGCCCTGCTAGAGAGTGGAACCTATGAAGAGAACTTGTACGGTACTCCCAAGCCCCCAGCCGAGCCCAGTCCGGCGGCCCCTCCCTTGAATGTGAGTGAGGCGCTGCTGCCCGGAGCCTGGCCCAGCGCCCAGGGTAAGAGGAAGAGGAACCAGTCGGTTAGCAACATGGAGCAGCGAGCCAGCCTGGAGCTGCCTGAGGAGGAGGACTGCAGCCCTCCCGTGGTCAACGAGAATGGCGTGGCCATCACGCCAGAGTCAAGCGAGCATGAGGACAAGAGCACGGATGTGTCTGAGGAGGTGTCTATGATGGATGTCCTCACCCTTCCCCCTCCCTTCACTGAGCCCCCCACAGAGGGTGAGGAGTCCCCCGAGCGGGAACCCCCCAAATCGCCCCCCAAACTCCCcaaaggagatgaggaggaaCTGGGACCCCTACCCGACAACTGGGAGATGGCCTACACTGAGAAAGAAGAGGTCTACTTCATAGATCACAACACTAAAACCACATCATGGCTGGATCCTCGGCTGGCAAAGAAGGCCAAACCACCTGAGGAGTGCAAAGAGGACGAACTGCCGTATGGCTGGGAGAAGATCGATGACCCTATCTATGGCAGTTACTACGTAGACCACATCAACAGAAGGACTCAGTTTGAGAACCCTGTCCTGGAGGCCAAGAGACGACTGGAGCAGCAGATGCAGAACCAGGGACTGTCAGCTCTGCCTTTACCTACTATATACAGAGAGAAGCCCCCATTCACGAGGGACCCCACCCAGCTGAAGGGCTCCTTTCTGTCCACGGCTCTCCAGAAGAGCAACATGGGCTTTGGCTTCACAATCATTGGAGGGGATGAACCGGATGAGTTCCTGCAGGTCAAGAGTATCATACCCGAGGGCCCTGCTGCACAGAACCAGAAGATGGACACAGGTGATGTCATCGTCTACATCAATGACATCTGCTGCCTGGGCACCACTCACGCCGATGTGGTCAAACTCTTCCAATCTGTTCTCATTGGACAAAGCATCACCCTGGTCCTCTGCCGGGGCTACCCCCTGCCTTTTGACCCCGAGGACCCCAGCGGGGCATCCGCCGGAAACTCCCTGACCCCCATTGGCATGGAACACCACCCCATGGTGGTGAACGGGCGTAGCAGCTACAACCATTACCTGGAGTACCTCTCCCTGAGCTCTCAGCTCCCTTCGCAGGCTCTAGCCCAGCCTGGGGCACCCCACCCTGGGGACACCCACCTGGATGGGTCCTCATTACCGCTCACCAACCCCGGGTCCGCTCCGACCGTGACGCCGCGCGACGACAATGTCTCCATGGTGTCGTCAGGGGCGACGGGGATCACCGGGGGCGTGATCCAGGGGGCGGAGCTGCTGACGGTGACTATGGTGAAGAGGGCAGAGGGGTTCGGGTTCACCATCGCCGACAGCCCCACGGGGCAGCGGGTCAAACAGGTGTTGGAGCCGGTTGTGCAGGACGGAGTGAGTCTGAATGAAGGAGACCTGATCCTGGAGGTGAACCAGCAGGGTGTGGTGGGGGCAAGACACGGCCGTGTGGTGGAGCTGCTCAAAGAGTGTCCTGTCGGAGCCGAGGCCACGCTACTcatacagagaggaggaggggaagGTCACCTCTCTCCATGGAAGACCTCCAAACAGATACCAGAGCAGTGGGACCCCCATGGAAGTCCCCAGACTTGCTTGTCAGCCCCAGTGCTTCCCACGGGCACACCCTTCTCTACCCAGCCACAGCATCACATCTCAGTCCCCGACTCCACGGAGGGCTTCGACCTCAACAAACCCGACCCATATGACCTCTATGAGAAGTCCAGGGCCATCTACGAGAGTAGACGTCCAGAGTACCAGGAGGTGGAAGTTCACCTGTTGAGGGAGAAGACTGGGTTTGGCTTCCGCATCCTGGGGGGAGACGAGGCCGTGCAGGCTGTGAGTCCGGACGCCCGCGACAAGATTGTGATTGGGGCGATCATAGAGAACACTCCTGCAGAGCGCGATGGACGTCTTCGACCTGGGGACGAGCTCATCTCCGTGGATAAAATGGTGGTTGCTGGGAAACCACACAGATACGTGATCGACCTGATGCACGCCGCTGCACACAATGGTCAGGTCAGCCTGAAGGTCCGGAGGAGAGTCCACTTCTTCAGTGAGGTGTTAGGGGTGAACGGCCGTAGCCCTGGCTACGTGTCCACGCAGCACAATTCCCCGCTCAGCGACGTCGCCTCAGCTTCCTGTCCCGTAACCCCCGGCAATGTCCCGCCACCATGCACCACCTCCCCTCTGGAGGGCACCGTCCCCCTGCATACTAGTGATGTCATCATCCACCGCAAAGAGAACGAGGGCTTCGGCTTTGTCATCATCAGCTCGCTGAACCGACCGGAGAACACAGCTGTCATCACTGTGCCCCACAAGATTGGGCGTATCATTGAGGGCAGCCCAGCGGATCGCTTTGGCTGCCTGAAGGTTGGCGACCGGATCCTGGCCGTCAACGGGCAGTCCATCATCAGCATGCCCCACGCCGACATCGTCAAGCTCATCAAAGACGCCGGACTCATCGTCACCCTGCACATCATACCGGAGGAAGATCCCCACTCGAGGCCCAGCTCAGATAAGCAGAGCCCCATGACCCAGAAACACAGCCCCCAGGCCCAGCCAAGCCCCATAGTCAACCAGCCCAGCCAAGGAGCATCCCAGCCGGGTCATGCACCAGCCCAGCTGGGACAAACAACCACCACCCAGGAAGGCCCAGCACCACCAGCTCTGCCCGGCCAAACACCAGACCAGCCAGGCCAAGAACCAGCAGCAGCCACACAGCCTACCCCAGGAGCGGACGCCCAGCCCAGCCCGGCAGGCACCCAGCAGAGCCCGGTCGCCCAGCCACCCGGCCACCCTCCCCCGCTCTACCTCCACGACGGCAGGTCAGAGGTGAAAGCCAGGCAGGACGTGAAACCGGATATCCGCCAGCCTCCGTTCACCGACTACCGGCAGCCCCCTGTCGACTACCGGCATCCTCCGGTGGCTGATTACCGGCAGCCGCCCACACTGGATTATCGtcaccctcctcccctcatcgACTACAGACAACACTCGACAACACTCGCTGCACAGTTCCCTCTTGCACAGTTTCCACCTGACTTCAGACCACAGAACTTTGACTACTTCACGGTAGAGCTGGAGAAGAGTGTGAAGGGTTTTGGCTTCAGTATTCGTGGGGGACGGGAGTACAAGATGGATCTGTTTGTTTTGCGGCTTGCAGAGGATGGGCCAGCCATCCACAATGGCAGAATGAGGgtgggGGATCAAATCATTGAGATAAATGGTGACAGTACCCGGGACATGACTCATGCCCGGGCCATTGAGTTGATCAAGGCGGGGTGCAGGCGGGTGAGACTGTTGCTAAAGAGAGGCACGGGACAAGTGCCTGAGTATGGTGGGTCTCCCCCCAAATAAACCCCCATCttaatttttttctctctctttccctctctcgctttataatttttctctctctatagagagagaatatatctTTGTGCATATATCTTTCTTTCTCAATCTCTTTTTGGTTGACAATCTCTCTCTTGTGCTAGTCTAAAAAAAATGTCTCTCTTGTTTCCCATCAtcgctcactctctctatctcctctctctctctctctctctctcactctctctctctctctctctgtctctgtctctgtctctctctgtcgctatctctgtctgtgtttcaaTAAAATTCaagtgctttattggcatgggaaacatatgttcacATTGCCAaaccaagtgaaatagataataaacaaaagtgaaatatacATTAaataatgaacagtaaacattacactcacaaaagttccaaaagaatagagacatttcaaatgtgatATTATGGCTAAATACAGTGtggtaacgatgtgcaaatagttaaagtaaaaaagggaaaataaataaacataaatatgggttgtatttacaatcgtgtttgttcttcactggtttctgctctggcacactgtggtatttcacccataGGGAGTTTAACagaattggatttgtttttgaattctttgagtctgtgcaatctgagggaaatatgtgtcctACCGGCTCGATTCTGTCtgatgtagcaaaatttgaaattgtgtttttacattgcataaaagtagagactcagagatagaaaatggtatatcatacactacagatGAGAAACAATGGGAAGGTAATTCTGCTTtggaagttgataaacttgtaacctcacttttgggAAGAtggccttgaatgttttggtacacctactggagagctcttctttgtctacacccattcagtatCGTTCACACTCTCTTAAGAATTACCTCAAGAATTGCCTtaggcgaaaggctcggcacacgcatactcaagcAGACTAGCTATCATTCagccaaatgagaaataagtgcactcaggctatccggaagaaCAAAGTTAGTTTCTTTAAagagctggtctctctctgtgggtctaaccccaagaagttctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68287 lncRNA downstream 3739 55897741 ~ 55898159 (-) True G61531
TU68286 lncRNA downstream 61562 55840143 ~ 55840336 (-) True G61530
TU68285 lncRNA downstream 62089 55838753 ~ 55839809 (-) True G61529
TU68329 lncRNA downstream 65347 55836296 ~ 55836551 (-) True G61564
TU68324 lncRNA downstream 67970 55832872 ~ 55833928 (-) True G61563
TU68502 lncRNA upstream 13718 56161122 ~ 56161351 (-) True G61722
TU68510 lncRNA upstream 17905 56165309 ~ 56165704 (-) True G61730
TU68512 lncRNA upstream 18395 56165799 ~ 56166059 (-) True G61732
TU68529 lncRNA upstream 30785 56178189 ~ 56178408 (-) True G61744
TU68536 lncRNA upstream 36674 56184078 ~ 56184536 (-) True G61751
XM_036980645.1 mRNA downstream 100859 55744407 ~ 55801039 (-) True LOC110525505
XM_021605612.2 mRNA downstream 773628 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA downstream 773628 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA downstream 773628 55071579 ~ 55128270 (-) False LOC110525476
XR_005052176.1 mRNA downstream 867639 54978911 ~ 55034259 (-) True LOC118964914
XM_021599100.2 mRNA upstream 388265 56535669 ~ 56544298 (-) True LOC110521481
XM_021605723.2 mRNA upstream 644217 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 644217 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 644217 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 644217 56791621 ~ 56873359 (-) False smoc2
TU68326 other downstream 68538 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 698156 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 708175 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 747640 55150241 ~ 55154258 (-) True G60572
TU67198 other downstream 830999 55070392 ~ 55070899 (-) True G60516
TU68495 other upstream 6026 56153430 ~ 56153918 (-) True G61715
TU68821 other upstream 377566 56524970 ~ 56533975 (-) True G61978
TU70000 other upstream 888263 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 904694 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 1249790 57397194 ~ 57398488 (-) True G63328

Expression Profile