RNA id: XM_036980680.1


Basic Information

Item Value
RNA id XM_036980680.1
length 5725
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110525190
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55901897 ~ 56147404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacgctgacgtcattttcagtttataacctgtggtaaaatgtgtatgaaccagtactctcttgaattaaacgctgttacctaacttttaagaccggggctctgtccattcttagAAAATATAGGGTCGTACAAACCCTTTGAAtgcattgacagagtgtttaattttgattggaaattaaaacagaggaatttagaattccttCAACAGTTGTTCCTAAGTTGAGAGGGGATTTTATTAGAGGAGGAGTACTTGGAAGACCAGCATGAATGGGTGGCAGACGAGGGTGGCAAGGTTGAGATCAGACAAGGAAGACCCTCATTGGGGAAGAGGTCAGTGATTGAAGTGGAGGGGGTGCCAAGAGAGTTCAGGCTCTGAACCAAATAATAGCCAGTATAGTAAACTGCATACAATATACATTGAGGTACAATctgattgacagcatggccaatgtctTCAAACTTTTCTAgcccacctcatgggtctcccagtcaccgCTGGCTGTAACACAGCCTAGGATCAAATCCGGGGCTGAagtgaatttgcaatttccaacttgttgtgtaatgtttatggtcGATAAGCACCGATAAGTTTTATCTATAATCTCTTTATATGACAAGGGTTGAAAagaatttgccagtagattgctgACTTCATGCACGATGATGATTGCTTGTCTAGCTTACTAGCTAAGATTTTTAAAGTaaaatgttgacatgatcagtccaatcaaagcgacGGTAGatattttatctgtggccaatgatggGCACTTGTAATATAAGTCTATGGCATGAATTTTCAAGCTCTACCCATAGATTTTGCGgcgatgtagtgtccccatgagtgacagaacactgagccaacaAGAGAATATTACCAACACCTACATTCCGTATTttatgtttgtatgtggctttaacTAAAtgatcattttttaaatatatattttttacattgtttgcaaactgatatgtgacatgtattaatgccaaaataacatgcaaaacaggtggggctcaaaacttgggaggctctgccccacctgccctgaatgacgcaTTGCCACTGCTAATATATGGTGGTGAAGTTCTCTGCTCAGctgacagaaacaggagatacagGAGTCCATTCTGTTCCAAGAAGGGTACCTTGGCTCTCCTCTATGTACAGCACTCTGGGGACTTTCTGCAGTTGTTCTCAGGAGAACAGCGAGGCAGAGGACACCAAGTTTGGACCAATTATGTTAACGTCCCACTTTAAGAACCTGGAGATCTTCACTGGTTCTGAGGGAGGTGACTTGGCCACAAACTGTACCTGGGACACCTTCCATCGCTACCACTGTCTGAAAAACAGCCACAGGGTGGTCAAGACATCTGCTGCAACTTCATCTTTAGTGTGTCAGCTCTGCTGCACCTGGGAGCTACAGAGTCAAGCGAGCATGAGGACAAGAGCACGGATGTGTCTGAGGAGGTGTCTATGATGGATGTCCTCACCCTTCCCCCTCCCTTCACTGAGCCCCCCACAGAGGGTGAGGAGTCCCCCGAGCGGGAACCCCCCAAATCGCCCCCCAAACTCCCcaaaggagatgaggaggaaCTGGGACCCCTACCCGACAACTGGGAGATGGCCTACACTGAGAAAGAAGAGGTCTACTTCATAGATCACAACACTAAAACCACATCATGGCTGGATCCTCGGCTGGCAAAGAAGGCCAAACCACCTGAGGAGTGCAAAGAGGACGAACTGCCGTATGGCTGGGAGAAGATCGATGACCCTATCTATGGCAGTTACTACGTAGACCACATCAACAGAAGGACTCAGTTTGAGAACCCTGTCCTGGAGGCCAAGAGACGACTGGAGCAGCAGATGCAGAACCAGGGACTGTCAGCTCTGCCTTTACCTACTATATACAGAGAGAAGCCCCCATTCACGAGGGACCCCACCCAGCTGAAGGGCTCCTTTCTGTCCACGGCTCTCCAGAAGAGCAACATGGGCTTTGGCTTCACAATCATTGGAGGGGATGAACCGGATGAGTTCCTGCAGGTCAAGAGTATCATACCCGAGGGCCCTGCTGCACAGAACCAGAAGATGGACACAGGTGATGTCATCGTCTACATCAATGACATCTGCTGCCTGGGCACCACTCACGCCGATGTGGTCAAACTCTTCCAATCTGTTCTCATTGGACAAAGCATCACCCTGGTCCTCTGCCGGGGCTACCCCCTGCCTTTTGACCCCGAGGACCCCAGCGGGGCATCCGCCGGAAACTCCCTGACCCCCATTGGCATGGAACACCACCCCATGGTGGTGAACGGGCGTAGCAGCTACAACCATTACCTGGAGTACCTCTCCCTGAGCTCTCAGCTCCCTTCGCAGGCTCTAGCCCAGCCTGGGGCACCCCACCCTGGGGACACCCACCTGGATGGGTCCTCATTACCGCTCACCAACCCCGGGTCCGCTCCGACCGTGACGCCGCGCGACGACAATGTCTCCATGGTGTCGTCAGGGGCGACGGGGATCACCGGGGGCGTGATCCAGGGGGCGGAGCTGCTGACGGTGACTATGGTGAAGAGGGCAGAGGGGTTCGGGTTCACCATCGCCGACAGCCCCACGGGGCAGCGGGTCAAACAGGTGTTGGAGCCGGTTGTGCAGGACGGAGTGAGTCTGAATGAAGGAGACCTGATCCTGGAGGTGAACCAGCAGGGTGTGGTGGGGGCAAGACACGGCCGTGTGGTGGAGCTGCTCAAAGAGTGTCCTGTCGGAGCCGAGGCCACGCTACTcatacagagaggaggaggggaagGTCACCTCTCTCCATGGAAGACCTCCAAACAGATACCAGAGCAGTGGGACCCCCATGGAAGTCCCCAGACTTGCTTGTCAGCCCCAGTGCTTCCCACGGGCACACCCTTCTCTACCCAGCCACAGCATCACATCTCAGTCCCCGACTCCACGGAGGGCTTCGACCTCAACAAACCCGACCCATATGACCTCTATGAGAAGTCCAGGGCCATCTACGAGAGTAGACGTCCAGAGTACCAGGAGGTGGAAGTTCACCTGTTGAGGGAGAAGACTGGGTTTGGCTTCCGCATCCTGGGGGGAGACGAGGCCGTGCAGGCTGTGAGTCCGGACGCCCGCGACAAGATTGTGATTGGGGCGATCATAGAGAACACTCCTGCAGAGCGCGATGGACGTCTTCGACCTGGGGACGAGCTCATCTCCGTGGATAAAATGGTGGTTGCTGGGAAACCACACAGATACGTGATCGACCTGATGCACGCCGCTGCACACAATGGTCAGGTCAGCCTGAAGGTCCGGAGGAGAGTCCACTTCTTCAGTGAGGTGTTAGGGGTGAACGGCCGTAGCCCTGGCTACGTGTCCACGCAGCACAATTCCCCGCTCAGCGACGTCGCCTCAGCTTCCTGTCCCGTAACCCCCGGCAATGTCCCGCCACCATGCACCACCTCCCCTCTGGAGGGCACCGTCCCCCTGCATACTAGTGATGTCATCATCCACCGCAAAGAGAACGAGGGCTTCGGCTTTGTCATCATCAGCTCGCTGAACCGACCGGAGAACACAGCTGTCATCACTGTGCCCCACAAGATTGGGCGTATCATTGAGGGCAGCCCAGCGGATCGCTTTGGCTGCCTGAAGGTTGGCGACCGGATCCTGGCCGTCAACGGGCAGTCCATCATCAGCATGCCCCACGCCGACATCGTCAAGCTCATCAAAGACGCCGGACTCATCGTCACCCTGCACATCATACCGGAGGAAGATCCCCACTCGAGGCCCAGCTCAGATAAGCAGAGCCCCATGACCCAGAAACACAGCCCCCAGGCCCAGCCAAGCCCCATAGTCAACCAGCCCAGCCAAGGAGCATCCCAGCCGGGTCATGCACCAGCCCAGCTGGGACAAACAACCACCACCCAGGAAGGCCCAGCACCACCAGCTCTGCCCGGCCAAACACCAGACCAGCCAGGCCAAGAACCAGCAGCAGCCACACAGCCTACCCCAGGAGCGGACGCCCAGCCCAGCCCGGCAGGCACCCAGCAGAGCCCGGTCGCCCAGCCACCCGGCCACCCTCCCCCGCTCTACCTCCACGACGGCAGGTCAGAGGTGAAAGCCAGGCAGGACGTGAAACCGGATATCCGCCAGCCTCCGTTCACCGACTACCGGCAGCCCCCTGTCGACTACCGGCATCCTCCGGTGGCTGATTACCGGCAGCCGCCCACACTGGATTATCGtcaccctcctcccctcatcgACTACAGACAACACTCGACAACACTCGCTGCACAGTTCCCTCTTGCACAGTTTCCACCTGACTTCAGACCACAGAACTTTGACTACTTCACGGTAGAGCTGGAGAAGAGTGTGAAGGGTTTTGGCTTCAGTATTCGTGGGGGACGGGAGTACAAGATGGATCTGTTTGTTTTGCGGCTTGCAGAGGATGGGCCAGCCATCCACAATGGCAGAATGAGGgtgggGGATCAAATCATTGAGATAAATGGTGACAGTACCCGGGACATGACTCATGCCCGGGCCATTGAGTTGATCAAGGCGGGGTGCAGGCGGGTGAGACTGTTGCTAAAGAGAGGCACGGGACAAGTGCCTGAGTATGGTGGGTCTCCCCCCAAATAAACCCCCATCttaatttttttctctctctttccctctctcgctttataatttttctctctctatagagagagaatatatctTTGTGCATATATCTTTCTTTCTCAATCTCTTTTTGGTTGACAATCTCTCTCTTGTGCTAGTCTAAAAAAAATGTCTCTCTTGTTTCCCATCAtcgctcactctctctatctcctctctctctctctctctctctcactctctctctctctctctctgtctctgtctctgtctctctctgtcgctatctctgtctgtgtttcaaTAAAATTCaagtgctttattggcatgggaaacatatgttcacATTGCCAaaccaagtgaaatagataataaacaaaagtgaaatatacATTAaataatgaacagtaaacattacactcacaaaagttccaaaagaatagagacatttcaaatgtgatATTATGGCTAAATACAGTGtggtaacgatgtgcaaatagttaaagtaaaaaagggaaaataaataaacataaatatgggttgtatttacaatcgtgtttgttcttcactggtttctgctctggcacactgtggtatttcacccataGGGAGTTTAACagaattggatttgtttttgaattctttgagtctgtgcaatctgagggaaatatgtgtcctACCGGCTCGATTCTGTCtgatgtagcaaaatttgaaattgtgtttttacattgcataaaagtagagactcagagatagaaaatggtatatcatacactacagatGAGAAACAATGGGAAGGTAATTCTGCTTtggaagttgataaacttgtaacctcacttttgggAAGAtggccttgaatgttttggtacacctactggagagctcttctttgtctacacccattcagtatCGTTCACACTCTCTTAAGAATTACCTCAAGAATTGCCTtaggcgaaaggctcggcacacgcatactcaagcAGACTAGCTATCATTCagccaaatgagaaataagtgcactcaggctatccggaagaaCAAAGTTAGTTTCTTTAAagagctggtctctctctgtgggtctaaccccaagaagttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68287 lncRNA downstream 3740 55897741 ~ 55898159 (-) True G61531
TU68286 lncRNA downstream 61563 55840143 ~ 55840336 (-) True G61530
TU68285 lncRNA downstream 62090 55838753 ~ 55839809 (-) True G61529
TU68329 lncRNA downstream 65348 55836296 ~ 55836551 (-) True G61564
TU68324 lncRNA downstream 67971 55832872 ~ 55833928 (-) True G61563
TU68402 lncRNA upstream 32903 56033203 ~ 56087068 (-) True G61635
TU68502 lncRNA upstream 160822 56161122 ~ 56161351 (-) True G61722
TU68510 lncRNA upstream 165009 56165309 ~ 56165704 (-) True G61730
TU68512 lncRNA upstream 165499 56165799 ~ 56166059 (-) True G61732
TU68529 lncRNA upstream 177889 56178189 ~ 56178408 (-) True G61744
XM_036980645.1 mRNA downstream 100860 55744407 ~ 55801039 (-) True LOC110525505
XM_021605612.2 mRNA downstream 773629 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA downstream 773629 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA downstream 773629 55071579 ~ 55128270 (-) False LOC110525476
XR_005052176.1 mRNA downstream 867640 54978911 ~ 55034259 (-) True LOC118964914
XR_002473726.2 mRNA upstream 68905 56069205 ~ 56079673 (-) False LOC110525232
XR_005052192.1 mRNA upstream 68905 56069205 ~ 56079783 (-) True LOC110525232
XM_021599100.2 mRNA upstream 535369 56535669 ~ 56544298 (-) True LOC110521481
XM_021605723.2 mRNA upstream 791321 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 791321 56791621 ~ 56873356 (-) False smoc2
TU68326 other downstream 68539 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 698157 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 708176 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 747641 55150241 ~ 55154258 (-) True G60572
TU67198 other downstream 831000 55070392 ~ 55070899 (-) True G60516
TU68495 other upstream 153130 56153430 ~ 56153918 (-) True G61715
TU68821 other upstream 524670 56524970 ~ 56533975 (-) True G61978
TU70000 other upstream 1035367 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 1051798 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 1396894 57397194 ~ 57398488 (-) True G63328

Expression Profile