RNA id: XM_021599100.2


Basic Information

Item Value
RNA id XM_021599100.2
length 1947
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110521481
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56535669 ~ 56544298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTCCTTGTGTTCTTCCTGGGACTCTACCTGGCGACAGGTGCGTTTCCCTCCTCGGTGAGTGCGTGCCCGTCACAGTGCAGCTGTTTTTTTCACAACCTAAGTGATGGATCTAAGGCCAGGAGTGTCATTTGCAATGACCCTGAGATCTCCCTTGTGCCTGCCAATTTCCCCGTGGACACGTCCAAGCTGCGTATCGAGAAAACAGCCATCCAACGGATCCCAAGTGAAGCCTTCAACTATCTCCGAAATCTGGAGTTCCTTTGGATGTCCTTTAACGTGCTGTCCGCTCTCAACTCGGACAGTTTCCGTGGGCTGCTAGATCTGGAGGAGCTGAGACTGGATGGGAATGCCCTCACTTCGTTCCCCTGGGAGTCTCTTATGGATATGTCCAGCCTCAGGCTGCTGGACTTGCATAACAACCGGTTGACCTCAGTTCCCGCAGACGCCACAATGTATATAAAAAACCTGACCTACCTGGATCTATCCAGCAACAACCTTCTGACTGTCCCGGCCGAGGTGCTAGCCACTTGGCTAACAGTTAAATCTTCGCATGGCCCAGATAGCTCCAAAATGATACTTGGTCTCCATGACAACTCCTGGGTGTGTGACTGCCGCCTGTACGACCTGATCCAGTTCCAGAAGTCGCCAACGCTCTTCGTGGCATTAATCGACACGCGCCTCCGCTGCTCCGCCCCCGAGAGCCtgtcaggtgttctgttcagCGACGCCGAGGGGCGGAGATGCCAGGCGCCGCGCATTCACACAGCAGTGGCGCGAGTCCGCAGCGCCTTGGGAAACAATGTGCTTCTGCGCTGCGGGACCATCGGCATTCCCAGTCCTGATCTGGCCTGGCGGAGGGCGGATGGGAAAGCCCTGAATGGGACAGTCCAGCAGGAGAACTCCAAGGAAGGCATCGTCTGGTCAATCCTCAGTGTCCCGGCCGTGTCCTACCGTGACTCAGGGAAGTATGTCTGCAAGGCCAATAACTACGCCGGCAATGCCGAGGCCGTCATCTCCCTAGTTATCTCTGAAGCACCCCCAAAacccgacaacaacaacaacctaaCCAGCGTGGTTGCTGCTGCcgtaaaaaaaaacaaagtcAAGAAACCCAATGGGATAGGGAAAGCAGCATACCAGGAGAAACTGGTGGCTAGGGTAGGGGTTCCCACCACCAGCCCTCCACCCCCACTTGTTGTGTTGGACTCCAGCCCTGCGCCTGAGGGTGTGGGGAGTGTAGCAGATAGAGCCATCCCTGGACCAACCACTTTGCCTAGTCCAGACGGACTCCTGGAGCTGGAGAAAACCAACCTGAGCAACCTGGCCCAGGCACAGTATGACCCGGACCGGATAGTTcgctctgtcaaggtgttgggCGACACAGAGAACACCATCACCCTGAACTGGCGGGCACCCAAGGCCAAGAACACCACAGCTTTCAGCGTGCTCTACGCTGTCTTCGGTGAGCGGGACATGCGCAAGATCAATGTGGCGGCGGGCCAGAATCGCGTCTTCATCGAGGGCCTGGTGCCCAAGACCAAGTACATTGCTTGCGTTTGCGTCCGGGGCCTGATCCCCAAGAAGGAGCAATGCGTCATCTTCTCAACCGATGAGGCGGCCAGCGCAGCCGGCACCCAGAAGCTCATCAACGTCATCGTGATCACGGTGGCGTGCGTCATCGCCGTGCCGCTCACCGTCATCGTGTGCTGTGGCGCACTCAAGAGGCGCATCCAGAAGATGTGGGGAAAGAAGTCCAAGGACATCCAGGATTCGTACGTGACTTTTGAGACGCTGTCCCCCGGGACCAAGGCTAAAGGTTTGGATGGTGAGTACCTGACCAGACTCAACCCTGAGGAGTCCAACCGACTGCTGTCGGCCCGCTCCAGTCTGGACTCAGAGGCCACGGCTAAGATAGAGGGACAGCCCAACGAGTACTTCTGCTGA

Function

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68813 lncRNA downstream 40260 56494084 ~ 56495409 (-) True G61976
TU68810 lncRNA downstream 42532 56488406 ~ 56493137 (-) True G61975
TU68808 lncRNA downstream 42658 56488406 ~ 56493011 (-) False G61975
TU68702 lncRNA downstream 51418 56482665 ~ 56484251 (-) True G61877
TU68695 lncRNA downstream 60041 56473369 ~ 56475628 (-) True G61871
TU68862 lncRNA upstream 25164 56569462 ~ 56598254 (-) True G62009
TU68884 lncRNA upstream 54370 56598668 ~ 56598996 (-) True G62026
TU68888 lncRNA upstream 58255 56602553 ~ 56602811 (-) True G62030
TU68892 lncRNA upstream 63089 56607387 ~ 56608282 (-) True G62034
TU68893 lncRNA upstream 64120 56608418 ~ 56608709 (-) True G62035
XM_021605162.2 mRNA downstream 388265 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA downstream 388265 55901898 ~ 56147404 (-) False LOC110525190
XM_036980672.1 mRNA downstream 407873 55901897 ~ 56127796 (-) False LOC110525190
XR_005052192.1 mRNA downstream 455886 56069205 ~ 56079783 (-) True LOC110525232
XR_002473726.2 mRNA downstream 455996 56069205 ~ 56079673 (-) False LOC110525232
XM_021605723.2 mRNA upstream 247323 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 247323 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 247323 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 247323 56791621 ~ 56873359 (-) False smoc2
XM_036980719.1 mRNA upstream 249985 56794283 ~ 56873384 (-) True smoc2
TU68821 other downstream 1694 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 381751 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 702309 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1331927 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1341946 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 491369 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 507800 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 852896 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2240444 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2600075 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile