RNA id: XM_021605716.2


Basic Information

Item Value
RNA id XM_021605716.2
length 2517
RNA type mRNA
GC content 0.48
exon number 14
gene id smoc2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56791621 ~ 56873384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTAGTCGCTACTCCATACTCACTACGCCTTTACGCAGTCTGGTCCTCTCTTTACTGAGCGAGGCTCATAACACAGCAGAGGACAAAACAGAAACGGATTCCCTGTTGTGGTTTagaggaaaaaaagaaaaagagggagaaagaaagaaaatagaaCTTTGTTTGCCTTTAGCTACCAGCAGCAGAAAGATAACTTCAAAACGTATAGGCTACCTACCTACCGTCAAGGAACTGCCTGCATCCGATAAGGGATCTAGTCCACAtacgaggagagggagggggtgtggAGAAAagtcgagagagagacagagtgtgtgtgtgtgagagagagagagagagagcactgaggGAGGGAAAAAGGTCAGGACACAGGGGGCATTTCGCACTGCGATAAATAAGGATAGTATCAGAAGGTTGCAGAAGTAACGGAATTGGCAGAGATAAAAACGTGTGATAAAATAAACGTCTGCCCACAACTTCTTCACAAAGTCAATTGAAAGGAGTACCTTGGTAATTGAATTGAGCGCATTTTCTCAAGAAAAGTATTTGGATACTTAGGACACAGTTGGTTTTGCTGAAGCCGAGACAGTAGGCTGGAGGATCACTTTGGATCGTGCGTAATTTTCATTGAGAGCCACCATCAGGATGCGCGTCTGCCTGCTCTTGGTCCTTCTCTGCCTCCTTTGCGCCGGGCACGCTCAGAAGTTTTCCGCTCTCACGtttctgCGGGTGGAGCAGGATAAGGAGTGTAACATGGAGTGTACTGGTGGTCCCAGGAAGCCCCTGTGCGCGTCGGACGGCAGGACCTTCTCATCGCGCTGCGAGTTCCTCCGTGCCAAGTGCCGAGACCCCCAGCTGGAGGTCATCCGAGGGCCATGCAAAGATACATCCAGATGTGTGGCAGAGAAGAAGTACACGGAACAGCAGGCCAAGAAGCTCTTCCCTCAGGTGTTTGTACCTGTCTGCAACCCAGACGGAACATACAGTGAGGTGCAGTGTCATagttacacaggctactgttggTGTGTCACACCCAATGGCCGTCCTATCAGTGGCTCAGCCGTGGCCAATAAGAAGCCCCGATGCCAAGGGTCAAAACATGAGAGAGCTAGCACAAGAGAACCCGGAAAAGCAGTTTCCTTGCAAATCTTTTCCATTCTAAACACAGATGAGTCAGCTGGCCTAGTGGGGGAGCCGAATTCCCCGACAGACGAGGAAGACATAATTTCTCAGTACCCCACCCTCTGGACAGAGCAGGTCCGCAGCCGGCAGAACAACAGGACCAGAACACAATCCTCGTCATGTGACCAGGAGCAGCAGTCGGCCCAGGAGGAAGCACGGCAGCACAAGAACGAGGCGGTGTTCGTGCCCGACTGTGCCCAAGGGGGCCTCTACAAACCTGTCCAGTGTCACCCGTCCACTGGGTACTGCTGGTGTGTGCTGGTGGACACAGGGCGGCCCATTCCTGGCACCTCCACCAGTGTACGTCCTGAAGCTTCCAAGTGTACAGATGCAACTACATACCAACGTACATGCAGATATGAGCAACCAAAGTGTGACGGCAACGCCAGAGCCCATCCCACCAAACCGAAGGACCATTACAGAAGCAGACATCTTCAAGGGTGTCCCGGGGCAAAGAAAACTGAATTTTTGACGAGTGTTCTCGACGCGCTGTCAACAGACATGGTGCATGCTGTCACAGATCCAGCGTCTGCCGGCAGGATGTTGGAGCCAGACCCAAGTCACACACTAGAGGAGAGAGTGGTCCACTGGTACTTTAGTCAGCTAGATAAAAACTCCAGCGGCGACATTGGCAAGAAGGAGATCAAACCTTTCAAACGTTTCCTGCGCAAGAAGTCCAAGCCCAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGTGACATCAGCAATGACAAGGCTCTGTCCCTGCAGGAGCTGATGGGATGCCTGGGCGTCACCAAGGAAGAAGGGACCAAACCAGGTGAAGGTACATCCTCCAGTAAACTGAATCCCTCAAAGAAGCAAGGCTAAGCCAACAACTGAGATTTCCCCTCCCCTTTTGGAGCTCCTGCCAATCGGCAATGGAAACCATAGTATTTGCACTTTGTACTTTAAGAAATGTAAATTCCCTTTGTAGAAATTAGGTATTTAAACAGACTGCTGAATCTGTGAATGATGTAGTTTTTTTTAAtgtctttacaaaaaaatatttaacacATACAGTGTATGTGTCTTTTGTGTCTAAAGAAAGTATACTTTTCGGAGTTGTACAAGTTTTGTGATGTTGCATTTTGTGTCCGCTTTGAATTGTTACGTTTTACTGTTGTTGATGTTAACACAGATGTATGTATAGTTTGTTACATGGCTAAAACATTAACTTAGGCCCCTCCGCATTTTTTTTATGTACTTACTGAGCTCTGTACAGCAGTTTGTATTATTAAACATGGATCATCACACAATTAATTTTGTTCAAAATGTATACATGTTTATTAGAAATAAAGAACTCTTTTATGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69184 lncRNA downstream 17222 56753218 ~ 56774399 (-) True G62314
TU69134 lncRNA downstream 89290 56683158 ~ 56702331 (-) True G62265
TU69103 lncRNA downstream 146113 56645088 ~ 56645508 (-) True G62236
TU68922 lncRNA downstream 150691 56640708 ~ 56640930 (-) True G62064
TU68902 lncRNA downstream 169617 56621791 ~ 56622004 (-) True G62044
TU69273 lncRNA upstream 9385 56882743 ~ 56882958 (-) True G62400
TU69277 lncRNA upstream 10851 56884209 ~ 56884429 (-) True G62404
TU69917 lncRNA upstream 34903 56908261 ~ 56908564 (-) True G63014
TU70009 lncRNA upstream 144906 57018264 ~ 57018486 (-) True G63102
TU70011 lncRNA upstream 145811 57019169 ~ 57019430 (-) True G63104
XM_021599100.2 mRNA downstream 247323 56535669 ~ 56544298 (-) True LOC110521481
XM_021605194.2 mRNA downstream 644217 55901898 ~ 56147404 (-) False LOC110525190
XM_036980724.1 mRNA upstream 31251 56904609 ~ 57560424 (-) False cdh23
XM_021605811.2 mRNA upstream 1296132 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA upstream 1296132 58169490 ~ 58282803 (-) False LOC110525582
XM_021605857.2 mRNA upstream 1296132 58169490 ~ 58282803 (-) False LOC110525582
XM_021605866.2 mRNA upstream 1296132 58169490 ~ 58282803 (-) False LOC110525582
TU68821 other downstream 257646 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 637703 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 958261 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1587879 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1597898 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 162309 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 178740 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 523836 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 1911384 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2271015 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile