RNA id: XM_021605762.2


Basic Information

Item Value
RNA id XM_021605762.2
length 4152
RNA type mRNA
GC content 0.44
exon number 7
gene id vsir
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57035608 ~ 57062851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCGCATGTGCGGTTTTAGTTGGAGTGCATTATTTTGCCAACAGTATATCCTCCTGCAAGACATCAAGTCACAAAAATTTGGTAGGACTACTTGTAACTTACTTTTACTAGTGACATTGTAGCATAAAGTGTCACGTGTCAAAGATTGTTATTCCAACGCAGTTAAAATAATTAACGTATCAGCAGagcaaaaaaaatatgtttgaagGAAGATCAATATTAAAAAGTAGGCTACATAGGCGACAGAAGACAATAATGACGTGGGAATTATACAGCAGAGAAACTTTACGGATCCATTTGCTGCTGAGGTTTCTGCTCTATTTTCACCTGGCGACCGTGGTTGGAGCCAATGGAGACGTGGCCCATCCTCACACCCGCCTGACTGTCAATGCCCCCCACCTTTCCTACATGTGCGAGGTGGGTGCCAATGTCACCCTGCTCTGTGCCCAGAAAGGTGCCAAGCTGCACCCCTCGGACCACCTGCATCAAAGCTGGCTTTTCACCCCCCACTCAGCTGAGCATTGCCATGACAAGGTGCACCCCCGCGAACACAATCACCGGGGCAACCATTCCAGTGCGGCGCTTCCTTGGGGGGTAAAGTACGGGGCAAGCGAAGAGTCTTTCTGGGTGCAACTACAGCTTGTGAACAATTCTGACCAAGGGCGTTACTGCTGCCTCTCCCTGGATATTAACAATGGCAAGGTGGTGCAGAGGACGCATAGCCACATCTTTCTCACTATCACACCTCggAAAAGAGATGAGGCGAAATGCACTCTATTGGACATCAAGCCAGCAGAAGTATCCTCAGGGTCAGTGACTGCAGGCCTGGCCACAGCTGCTTGCATCATGGCTATTCTCTCTTTGCCCATCATCATGGTGTTAGTGTACAAGCAAAGACAATCCGCCCAGTCCAGCCAACGTGCACACGAGCTGGTGAGAATGGACAGtGAAGCTGCGGGCCATGAGAACCCAGTATTTCTGGGGGTCTCACCCCCAGGCCAGGCTAAGACCAGGACTGTGTCTCAAATCATGACCAGGCAGTCCTCAGAGACAGGCCGACACCTGCTACTGTCCGACCCTGGCACCCCCCTATCTCCTCCCGCACACGGAGTTGTCTTCTTCCCAGAACAGGATCCCATCCTAGAGTCTCCTGATTTCCTGCATGTGTAGAGAGAAGCAGTCAATGGCTCCCTAACCCAGAAACACCTTGTGGTTAGTTATTCATCGTCACTCTGCCATGTCACCCTGAAGCCTGTCTCACAACCTTCTCTGCTgggggagctctctctctctgtgtaccgcATCCTGGATGgatgggagagggaaggaggggacagTTTCTTCTAAAATAAATGTTCCACCTGCAACAACAACTGGAGGAGgccaaagaggggggggggggatttgttcTCGACACTTGTGTTGCAGTGGGGGCCCGCTAAGTATGTGACGCACCGTCTGACCACTGACGACAGCTCAAGGACCAGCAGGTGCTCCTGATCTGATGTCCCAGGACTGTACTGAGGAGGATGGGGGGAGTGTGGGTGCAGGGTGGGCGGTAGAGGATACAAAGCAACTCCTGTGGACTCTTGATGATATGCTCCTCACCATTTCCCTCACCATTTTCCCCCATATAGGGCCCGTtccccggacacagattaagcatCAATCTAGACAGAAAACAGTGTAAACTTTGGTTTAGACATTTGTTTTCCACTAATATTTGACAAACCtatttttcagtggcaattgACGAGACTGACTAGACAGACCTAGAAAAAACGAACTGAACGAAAGTGATTTTTCAATACAGTTGACTAAAATGAGACACGACAACATCTACCTATCTCTGTAGTGGACAGGACAATCGTAGACTCTTTAGTGGACAGGACAATCGTTTTTGAACGTTTTTGAACAAATCTAGCACTTTTCAGTGATAAGCACAATTAATATTAGCAGGACAGATGTAGTTATTTTCAGCAGTGGGAAGGATGCACCACACCCGGCACACACAACCTCCATCAGCTGGTGAGCTGGGGGGGAGCAAGCGATGAGTGTGGACAGGCTTCGCTCCAGCTCCGTCTTCGATTAGACACATTGCGCAGGCAACTCTTCTTAATTTCCCGACATTGCGCAGGCAACTCTTCTTAATTTCCCGTAGCTAACCAGTCACCACTAGCATTCTAGTCAGCTACCCTTTGCCTGGTTAAGAAACACAAGCTGCTTTACAAAATGTAAAACAATAGCAGCATTGAGTTGAACAGTGCAACTACAGTCTAGCGATGTTCTTCTCTTCCTTGAGTAGAGAAAAGTAAGCTGTTTTTTGAATTTGTAGTCTTCGCGCAACCCTCCCACCTTCCCCACTGCCTTTCATAGGCAGGTTCTGTAGCCaagtctccctcttttcctcagaCAAAACGCTTGATGCTAGCCCTTACTGTTCAAAAGATATGACCCAGCTCTATGTTGTTTCTTTTTATTGTGCATTGGCGGGTTGCATTTTATATTCATAAAGAATATTGTGGGCCGTGCTAAAAGTAGGCTACTTGCGGACCAGACCGTTAACCATTTGTTTAGACTACaccttgttcagtcatgttacctcaatagctagctatagctaacaAACTGGGGCTCGTTCAGCAGTATGAAACTTTTTggaatgttcagatagaaatatgctatgtagaacaaacatgcctctgacATTTTTCTACTGAACGTGGCTCTGGTATTACCAGTAGCCCACTGTATATGCAAACATTCGGTGGCACAGAAAGAAAAGAAGAAAGGGATTGCAAAAAATTGATTGACTAAATTCTTCTTGCCACTACACCTATATCTGACTCGGTAAATAGAGTTAATGTGCACCCAGTGACTCGAGCACtgggactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatctaTGCAATATGAATTATGTGAATAAAATGAAAGAGCATTTAGTTGACTAAAATGGCCCATTGTTTTCTTCATTTTGACAATAACTAGATTAAatcattattaaaaaaatgttttactaagACGTAATATTTTTGTCAAAATTACTAAGACTAGACTAAATCTAAAAAAGAGGGACACAATtaaatggagattctccattgaaagtgcttCTTAGTCCAACACCATTAGCTTTATCTGTGTCCTGGAAACTGGCCCATAGTGTTCTACTTCTTTCTATGATGATTCCCTCTTCCTATGGCTCTGATATGCATATTCAGCACATTTGCTTGTGCCAAAGTGATCAGGGTAGTAAGAGGTACCCATGTGCTGACAGTAGTCTTTTAAGGCCATTTCCAACCAGCCTTAAACAATTGTTTCTAAAAATGTGTTTCACTGAGCTGTTGTAACGAGAccaaagccccacttttatttaTCTAAACGTCCCATTCTTGTGTTGTTCCTCTTTCCCCTTTTATATATTTCACTACCTAAAATACTGTGTTTCTGTAacccccctccatcccttcccTTTCCTCGCTCTTATTCCTTCCCACACCCTTCTCTGCACGTAACAATGTCCAAATATTCAACCAGTACTAGAAACTGTCAAATAAATATTAGAGATATATTGCTATGCTGGATGGTCTGTTTTTGAAGAGAAGTGTCAATTTTGGCTAGTGGATGGATCTAGTAACCCAAACTCAACGAGCCAAATGCCTTCACTGCCAAGATGACCAACGTGTTTATTCCATGGTGTTCTTGTGTTTACTGTTTTGTGATATCCTTTGGCATATTTTGTGCTTATACTTGATTATTTGTTATCTTTATGTTTATCTATCTGTAAGTATACATAATCGAATACTACTGTAGATATTAGATAAGGGGTGTTCAGTGAATTGTAAAAAAAACCACCCTGAaattagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtaatagcCAAACAGCAGCAGCTTTGGCAACACCATATGAAATAAAGCCTTTCccaaaaataatgaaataaaatgCTGATGTAATTTTTTTCTATAATAAATCGGCGCTCTTAAACCTT

Function

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69381 lncRNA upstream 15865 57019442 ~ 57019752 (+) True G62504
TU69378 lncRNA upstream 18752 57016367 ~ 57016865 (+) True G62501
TU69323 lncRNA upstream 22885 56960399 ~ 57012732 (+) True G62447
TU69288 lncRNA upstream 123800 56911606 ~ 56911817 (+) True G62415
TU69287 lncRNA upstream 125242 56910168 ~ 56910375 (+) True G62414
TU69398 lncRNA downstream 4989 57067840 ~ 57068054 (+) True G62520
TU69402 lncRNA downstream 13817 57076668 ~ 57076895 (+) True G62524
TU69453 lncRNA downstream 73988 57136839 ~ 57137089 (+) True G62565
TU69454 lncRNA downstream 75146 57137997 ~ 57138199 (+) True G62566
TU69459 lncRNA downstream 84505 57147356 ~ 57147649 (+) True G62571
XM_021605747.2 mRNA upstream 131391 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 438964 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1010704 55976159 ~ 56024913 (+) True LOC118964919
XM_021605689.2 mRNA upstream 1205431 55815371 ~ 55830186 (+) True LOC110525514
XM_021605663.2 mRNA upstream 1297200 55674086 ~ 55738417 (+) True LOC110525494
XM_036989719.1 mRNA downstream 559416 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 631647 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 743283 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 898865 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1745519 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 783602 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 787847 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1005246 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1112241 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2314154 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 1103714 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1158671 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1158671 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1524007 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1602483 58665334 ~ 58665906 (+) True G64315

Expression Profile