RNA id: TU70510


Basic Information

Item Value
RNA id TU70510
length 4209
lncRNA type sense_over
GC content 0.42
exon number 3
gene id wdr11
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57806134 ~ 57940604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTATAAAACATAATTGAAATTATAACTTGATCGCTTATGTGTGCCTCTGTATGCATGTGTGCCTGCAACTGTGTGTCAGGTGCGTCTGAACCCGGCAGAGAGCTCAGACGTGCTAAAGCGTTGGGCAGAGCACCTCTGCTCCCCCCAGGTCAACCAGAAGTCTAAGGCCATCCTAGTGCTGCTATCCTTGGGCTGCTTCCATAAAGTAGGAGAGATGCTACAAAgCATGAGGTACTTTGACCGTGCGGCACTCTTCATTGAAGCCTGTCTGAAGTACGGAGTGATGGAGGCCAACGATTCCACCAATAAGCTGATCGGGGCTGCGTTCGTGGACTACGCCCGACTACTGCGCACCCTGGGCCTGAGGGAGAGCGCCGCGTTCTGGGCATCGCGGGCAGGAGGTGCCGGAGAGCAACTGCTGGAAGAACTCTTCCAGGGAGAGGGGGCAGTGCCCGAGGAAACGGAGGGCCTGGAGAACACAGAGTGATCCCTgagtgtggaggagaggggaggagttgCCCATAAGCAAAGATCTATGATCAGCTAACGCTCACCCCCTCCTAATTGTAACTATTACAGGtgaaaatgcaaaactgatcttGGATCAGTGTTCTAGGGGAAAtttagggggagaggagaggaagtgttTGTCACTGGAGATTGCCATGTCTGTGAATATGCTTTTGTGTGTTCTGATTCATCACGTGATCAGTGTATGTGTATGCATGTCGATTTCTCCCCCAGTGGCAGGCCAAATGGAACCACACACTCACTCGCACAGCAAATGCAGACATTCATCTAATGCATCAATTTATGGTTATTAAGAACAGATTAAGAGATTATAATCAGTTTTTGTTGATTGATTTGAGGTTTTGAATGGTCAGTTAGCTTtattttgagtgttttttttttttaacaatctgACTCTTCCGTGGAAGATTCAATCAAAGTTTGCTGACTGTCGATGTACTGCTATTACCGTTTAAAGCAGTTAAAAGTGGCACAACCTTTTATCCTTCAACATTCTGCATTATGCACTCCCTTTTATTTAATGCTGGTGTTAGTGTAAATTAATGTTTAAATGTTTGAATGAATGACATTAAGGTCAAGTGAGTGTCCATTCCCTGTAGCTCAGACATGAAGCAGACCAATGTCCCAGACAACCCACACAGTGTAcctgacctgggttcaaatactatttgaaatccttcaaatactttgagtgtttgctttagcctgcTTGGAGTGCCAGATGAGCGTGGTTTGCACGGTTGAGACGTATCTATTGGTTATATTGCAACAGGCAAGCTCAGTCAAGCATTTGTGCTAGTATGTGAGCCCCGGTCTGCTGTGTCGTGACTGAGAGTAGGTGGTATAGAGCAGCTCTATTAAGACTGACCAAAGCCAGGCATAGTTAGCACAGGGGACTGCATTCATCAACTTGTCCCTGCATTACAGATGGGACACTGATGAGGCTCTTCCTCTAGTCTAGTTAGCCAGGATTGTTTGCGCTAACAGACACAGTATATTATACCCCTACACAGAAGAGAGGATTTGACCACTGTTAGCTATAAGGGCTTCTTGGTTAATATATAAAATGTGGGCATGAAGTATTCAACAGTTGGATTGCAGATTGATCTCCAGCTTTTCCCTATAAGGACATAAGATGTCAGTTTTATTGTGTGTTTTCTGATGTGTGAAGTATGAGGATGTCTcattaaaatataaaaaaatatcatgTTTAGCAAATCATTCTAGTGGACCAGAAAAGACAGAATCAGCAGGAAGTTGACTGCTGTTCTGTCAAGATCACTAAAAGTCCTCCCTCATCAGGAGCATAGCATTGGCTGGTACCAGGCTCAGGACTAAAATGAGCCAATCAGCAAATACTTCCTGTCGCATACTGTAGGGTTGCATTCTAAAGGATCCACAAACTGCATTACATAATCTGTAtctaagtacagttgaagtcagaagtttacatacaccttagccaaatacatttaaactccgtttttcacaattcctgacaattaatcctagtaaaaggtcagttaagatcaccactttattttaatgtgaagtgtcagaataatagcagagagaagtatttatttaaacttttttttctttcatcacattcccaatgcgtcagaagtttacatacactcaattagtatttggtagcattacctttaaattgtttaacttgggtcaaacgttttgggtagccttccacaagctgcccacaataagttgggtgaattttggcccattccccctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcatacggtttttcagttctgcccacaaatattcaatgggattgagttcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttgaaagtatgcttggggtcattgtccatttggaagacccatttgtgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacataattgtccctcctcatgaagccatctattttgtgaagtgcaccagtccgtcctgcagcaaagcacccccacaacatgatgctgccacccctgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatgatcattatggccaaacagttcgatttttgtttcatcagaccggaccagaggatatttctccaacaagtacaatctttgtccccatgtgcagttgcaaaccgtagactcgcttttttatggcggttttggagcagtggcttcttccttgctgagcggcctttgaatggttatgtcgatataggacttgttttactatggaaatagatacttttgtacctgtttcctccagcatcttcaccatGTCCTTTGCTgctcttctgggattgatttgcacttttcgcaccaaagtatgttcatctctaggagacagaacgcgtctccttcctgaatggtatgacggctgtgtggtcccatggtgtttatacttgctcactattgtttgtacagatgaacgtggtaccttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggacgtctacaattttttgtctgaggtcttggctgatttcttttgattttcccatgatgtcaagcagaggcactgagtttgaaggtaggccttgaaatacttccacaggtacacctccaattgactcaaatgatgtcaattagccaatcagaagcttctaaagccatgacatcattttctggagtttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattgtaagttaaataatctatctgtaaacaattgttggaaatattactttgGTCaagcacaaaatagatgtcctaaccgacttgccaaaactatagtttgttaacaagacatttgtggagttgttgaaaaatgagttttaatgactccaacctaagtgtatgtaaacttctgacttcaactgtatcaataGGCTAAACCAGTCTAACCATTGACTCACACCCGCATACCAAAAACTGTATAGCTCTTAAACCACTCACCAAAAACGACCAATCCCATGTCAACTCTTCCGTTAGGAGTGCGGgtaaaatattgttttttttccccttgcCTCGTCTGTCTTGTTCAAAGTCAAAACTATTAAAGAAATtaattattttaaaaatatatacaaaaaaaatgtgaatGATGTACATGAAAAGTAATTCTGTGTTTAGTAGCACTTGTATTATGTTTTCTTGTTCAGAAGTGATATTGTAACTAAATCTGTGTGTCGTTCAGTTGCTGTGAGTGCTGTTATAGTCTGGGATGTTGTTGACCACCCTAGACAATGTCACTATGGTAACCCACGCTTATTTTGAGGATTACACAGGGCTTAGTTCCCACATATCCATGTCATGTAGTTTCAGTGTGTTTGGAGTTTTAGTTTCCATTATGCCTGAAATGGACTGGAGTCCAAACcatagattatatttctatggtttaCTATTTCTATGGTCTAAAAGATCCAATCAGTTGATATACTGTTTATTTTGATCTAATCATGTCCTACAGTATTGTCTAAGTAATATTGGCCCCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70522 lncRNA upstream 38651 57819187 ~ 57896831 (+) True G63603
TU69656 lncRNA upstream 489833 57445138 ~ 57445649 (+) True G62768
TU69655 lncRNA upstream 490839 57444307 ~ 57444643 (+) True G62767
TU69634 lncRNA upstream 526968 57408182 ~ 57408514 (+) True G62746
TU69631 lncRNA upstream 529885 57405364 ~ 57405597 (+) True G62743
TU70889 lncRNA downstream 171601 58112205 ~ 58113058 (+) True G63950
TU70942 lncRNA downstream 224534 58165138 ~ 58165476 (+) True G64001
TU70943 lncRNA downstream 225629 58166233 ~ 58166460 (+) True G64002
TU71023 lncRNA downstream 362776 58303380 ~ 58304034 (+) True G64081
TU71025 lncRNA downstream 364302 58304906 ~ 58305109 (+) True G64083
XM_036989719.1 mRNA upstream 170084 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 213457 57694498 ~ 57722025 (+) True LOC118964920
XM_036980732.1 mRNA upstream 872631 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 872631 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 1031256 56894252 ~ 56904226 (+) True eif3s6ip
XR_005052202.1 mRNA downstream 21112 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 867766 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA downstream 868080 58808684 ~ 58838199 (+) True fam160b1
trnaa-ugc mRNA downstream 1121203 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 1269402 59210006 ~ 59212175 (+) True LOC110525756
TU68593 other upstream 1683467 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 1687712 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1905111 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 2012106 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 3214019 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 225961 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 280918 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 280918 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 646254 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 724730 58665334 ~ 58665906 (+) True G64315

Expression Profile