RNA id: XM_021605831.2


Basic Information

Item Value
RNA id XM_021605831.2
length 3750
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110525582
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58166565 ~ 58282805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAATTGAGCACTCTCTCCTTGCGCACGGAGCAAGAAAGGCTCGTCGTTTCTTTCGAGGCAAAAGCATAGAAAGAGAGGGGGCCACTGAGATTTGATTGGCTGAGGAAGGCAGAGCCAAAAACACTGTGGCCAGGAAACGGCTCGAATTTCGGGGGACGTAAGGAGGAGAAAAAATCTAGTAAACCTGACAAAGCGTCTGAGAACAGTACTAGGATTGTCTGGGAAGAAGACGCTCTGCCGCGAGGGATCATATATTGATGGATTCTATGTTTTTGGAGAGTTTAAGTTCTTTTTTTACCCATTAGTTCATCATAAATTGCAGACCTTTCGTTTGGATGAAGAGTGCGCTCGCTCTGGTACACTGACATTTGAGTTGACTAGCAACTTGGTGAAGAAGTTTCAGGGACGTAGCTATGTTTTTCTAGTTATTTTTCAAGGATATGGATTTAAATTCTGATTTTTTTAAAGTGCCATGGAACAACAATGACTTCGTGatttaataatacattttcagTGATTTTCTTTTGTTGCTCGTCCAATTTGGGGAAAGTAAAAAAAATCGCTGCTTGGCATTTTTGGTGCAGTGGGGTGAATTTGCTCCATCGGGACTAGGCTACACATTCCTCTCGATTCGGCACAGGCACTCGCCTCCTGCCTTGTCCATGCATGCGAATCGGAGTTCTTCCAGACTTTAGGTAGTTATTCGTTCCTTTCCTCAGCCCAGGTGATTGGGGGAATTCACAGTGAGTGACAGGCTGGGCAGCCTGCAGTTGATGGTTGGGTGGAGCCCCTCAGATgggatcagtgtccagggggagGCAGAGCCTGAGGAGGGGGGGATGGGGGACGGACTCACCCTCCACTAACGGGATGGCCTCGTGGGCCTGGCTGCTCGCCACCATCCTGCTGTCCCTAGCAACGGCTACTTTGGCAAGGCCGCCGTACACTGCCGCCGAGGAAGAGGAGGCTACGCTAGAACCTGAAGAGCCTCCGACCAAATACCAAATCTCTAAGCCCACCGTGTGCTCGGTGCACCCGGGGGAACTGCTGAAGCTCAGCTGCCTTCTGGCCGGGGAGCCCGGGGCCATCACCTGGACTAAGGATGGTTCCACTCTGGGGGCCAACAACCGCACCCTGATAGAACAGGAGGTTCTGCAGATCCGCGACGCCACGCCCAAGGACTCTGGGCTGTACGCGTGCAGCACTGTGGGCCCTCAGGGCAGCGACACGCTCTGCTTCATAGTGAACGTCACAGATGCCATCTCGTCTGGGGACGATGAGGACGACACAGAGCGATCGGAGGACGTGGGGGCGGACGGAGAGCAGATAAGGGCGCCCTATTGGACGATGTTGGAGAAGATGGAGAAGAGGCTGCACGCGGTGCCTGCTGCCAACACAGTCAAGTTCCGCTGTGCTGCCGGGGGCAACCCACGTCCTAAGATGCGCTGGCTGAAGAACAGCCGACCATTCCGACAGGAGGACCGCATGGGCGGGTATAAGGTGCGTCACCAGCACTGGACCCTGATTATGGAGAGTGTGGTGCCGTCAGACAAGGGCAACTACACTTGCCTGGTGGAGAACGCATACGGCGCCATCAATCACACCTACACCCTGGATGTAGTGGAACGGTCCCCCCATCGGCCCATTCTCCAAGCAGGGCTGCCAGCCAACACCAGTGTGCAAGTGGGGGAAGACGCACGCTTCGTGTGTAAGGTGTACAGCGACGCTCAGCCCCACATTCAGTGGCTGCAGCACATCCAGAAGAATGGTAGTCGCACTGGCCCAGACGGACACTCCTACGTCCGCGTCCTAAAGCGCTCGGGCATCAATAGCTCGGACGTGGAGGTGCTCACGCTCACCAACGTGACGGAGGAGGATGCCGGAGAGTATACCTGTAAAGTCTCCAATTATATAGGGGCGGTCAACCAGTCGGGCTGGCTGACCGTCATCCCAGCCAGTAACGACGAGACGGTGACGGGTCTGATGTCACCTGACTACGTGGAGATAGCCATCTACTGCATCGGGGTGTTCTTGATCGCCTGTATGGTGGTCATCGTGGTGGTGTGCCGGATGAGGAATACGGCTAAGAAGCCTGACTTTGGGAACCAGCCAGCGGTCCACAAACTCAGCAAGCAGATACCTCTGCGCCGCCAGGTAACAGTGTCAAATGACTCCAGCTCCTCGATGAACTCCAGCACTCCTTTGGTCCGCATCACCACACGACGCAGCTCGGCTGGCCACGACGACCCCATCCCAGAGTATGACCTCCCTGAGGACCCACGCTGGGAGTTCTCCAGAGACAgGTTGACTCTGGGCAAGCCGTTGGGCGAGGGCTGCTTTGGCCAGGTGGTGATGGCTGAAGCGTTAGGCATCGATAAGGACAAGCCGAAGGAGGCCATCACAGTGGCCGTGAAGATGCTGAAAGACGATGCTACAGAGAAAGACCTGTCTGACCTTGTGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAACATCATCAACCTACTAGGGGCCTGTACACAAGATGgccctCTGTATGTGATAGTGGAGTATGCCTCTAAAGGGAACCTGAGGGAGTACCTACGTGCCCGCAGGCCCCCTGGCATGGAGTACTCCTACGATATTAACCGCTGCTCAGACGAACAGCTCGCCTTCAAGGACCTGGTCTCCTGTACCTACCAGGTGGCACGGGGCATGGAATATCTGGCCTCGCAGAAgtGTATACATAGAGATCTAGCAGCGAGGAATGTCCTGGTCACAGAAAGCAACTTTATGAAGATTGCAGACTTTGGCCTGGCCAGAGACGTCCACAACATTGATTACTATAAAAAGACAACTAACGGTCGTCTCCCGGTGAAGTGGATGGCTCCTGAGGCTCTCTTCGACCGTGTGTACACTCACCAGAGCGATGTCTGGTCATTTGGGGTGCTAATGTGGGAGATCTTCACCCTGGGGGGTTCTCCGTACCCCGGCATCCCCGTAGAAGAGCTCTTCAAGCTGCTGAAAGAGGGCCATCGCATGGACAAGCCTGGCAACTGCACCAACGAGCTgtacaTGATGATGAAAGACTGTTGGCATGCCATTTCCTCCCATCGGCCCACCTTCAAGCAGTTGGTGGAGGATCTAGACCGTATCCTGACCCTGGTCACCAATGAGGAGTATCTGGACCTGTGTGCCCCAGCGGAGCAGTATTCTCCCAGCTTCCAGGACACACGCAGTTCCTGTTCCTCCGGTGACGACTCTGTGTTCTCCCATGACCCCTTACCAGAAGAGCCCTGCCTCTCAAAGTACCAGCACATCAATGGGGGCGTCAAAACATGAGGCCTCCCCTCCTCAATCCCTCCATCGAGCCTGACCTGCCCctcaccctaacccccccccccccccccccccccccaaaagagaCATCTTCCATAGAGAGAAACTGAGATATACCCCCACAACTAACCCCCTCAAACCACAAACCTCctgcccccccaacccccctcTGGCTCCCAATggactttatttttttattttttatttcacctttattcaaccaggtaggccagttgagaacaagttctcatttacaactgcgacctggccaagatgaagcaaagcagtgcgacaaaaaacaaactacacagagttacacataaacaaacgtacagtcaataacacagtagaaaaaaatctatgtacagtgtgtgcaaagacAGAGTGTGCAAAGGACTAACGGACTGGATGAGACTGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71721 lncRNA downstream 1339 58166565 ~ 58168151 (-) False LOC110525582
TU71722 lncRNA downstream 1339 58166834 ~ 58168151 (-) True LOC110525582
TU71790 lncRNA downstream 3793 58165491 ~ 58165697 (-) True G64813
TU71787 lncRNA downstream 5768 58163165 ~ 58163722 (-) True G64810
TU71699 lncRNA downstream 68539 58033510 ~ 58100951 (-) True G64725
TU71839 lncRNA upstream 21747 58304552 ~ 58304754 (-) True G64862
TU71847 lncRNA upstream 29593 58312398 ~ 58312912 (-) True G64870
TU71857 lncRNA upstream 42697 58325502 ~ 58325709 (-) True G64880
TU71861 lncRNA upstream 45381 58328186 ~ 58328386 (-) True G64884
TU71863 lncRNA upstream 46930 58329735 ~ 58329956 (-) True G64886
XM_036980724.1 mRNA downstream 609066 56904609 ~ 57560424 (-) False cdh23
XM_036980719.1 mRNA downstream 1296106 56794283 ~ 56873384 (-) True smoc2
XM_021605727.2 mRNA downstream 1296131 56791621 ~ 56873359 (-) False smoc2
XM_021605716.2 mRNA downstream 1296132 56791621 ~ 56873358 (-) False smoc2
XM_021605735.2 mRNA downstream 1296134 56791621 ~ 56873356 (-) False smoc2
XM_036980792.1 mRNA upstream 70840 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 70840 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 70840 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 70840 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 70840 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 771002 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1106642 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1106642 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1635515 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2015572 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 501937 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 861568 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2147402 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3399473 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3698926 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile