RNA id: TU71722


Basic Information

Item Value
RNA id TU71722
length 1318
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id LOC110525582
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58166565 ~ 58282805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaaccctttgcaatgagactcgaaattgagctcaggtgcatcctgtttccattgatcatccttgatgtttctacaacttgattggagtccacctgtggtgcatttaattgattggacatgatttgtaaaggcacacacctgtctatataaggtcccacagtgaacagtgcatgtcagagcacaaaccaagccatgaggttgatgcaattgtccgtagagctccgagacaggattgtgtcaagcacagatctggtgaagggtataaaaacattctgcagcattgaaggtccccaagaacacagtggcctccatcattcttaaatgaaagaggtttgaaaccaccaagactcttcctagaactggccgccctgccaaactgagcaatcaggagaaaagggccttggtcagggtggtgaccaagaacccgatggtcactctgaaagagctctagagtccctgaggagatgggagaaccttccagaaggacaaccatctctgcagcactctaccaatcaggcctttatggtagagtggccagacagaagccactcctcagtaaaagacacatgacagcccgcttggagtttgccaagaagcacctaaaggacactcagaccatgagaaacaagattctctggtctaatgaaaccaagattgaactctttggcctgaatgccaagcctcacgtctggaggaaacctgacacctccttacagtgaagcatggtggtggcagcatcatgcagtggggatttttttcagcgtcatggactgggagactattcaggatcgaggcaaagatgaacggagcaaagtacagatgaCAACCTGattgatgacaacctgctccagaatgctcaggacctcagactggggcgaaggttctctttctaacaggacaacgaccctaagcacacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtcctttagtggcccagccagagcccagccttgaacccgatcgaacgtctctggagagacctgaaaatagctgtgcaccgatgctccccatccaacctgacagagcttaagaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagcttgtggcgtcatacccaaaaagactcaaggctgtaattgctgccaaaggggcttcaacaaagtaccaagtaaagggtctggatacttatgtaaatgagatacttccgttttaaatttttaatacatttgcaaaaaaaattcaaaacctgtttttgctttgtaattatggggtattctgtgtagattgatggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71790 lncRNA downstream 1137 58165491 ~ 58165697 (-) True G64813
TU71787 lncRNA downstream 3112 58163165 ~ 58163722 (-) True G64810
TU71699 lncRNA downstream 65883 58033510 ~ 58100951 (-) True G64725
TU70803 lncRNA downstream 167330 57999276 ~ 57999504 (-) True G63867
TU70717 lncRNA downstream 225803 57897566 ~ 57941031 (-) True G63784
TU71839 lncRNA upstream 136401 58304552 ~ 58304754 (-) True G64862
TU71847 lncRNA upstream 144247 58312398 ~ 58312912 (-) True G64870
TU71857 lncRNA upstream 157351 58325502 ~ 58325709 (-) True G64880
TU71861 lncRNA upstream 160035 58328186 ~ 58328386 (-) True G64884
TU71863 lncRNA upstream 161584 58329735 ~ 58329956 (-) True G64886
XM_036980724.1 mRNA downstream 606410 56904609 ~ 57560424 (-) False cdh23
XM_036980719.1 mRNA downstream 1293450 56794283 ~ 56873384 (-) True smoc2
XM_021605727.2 mRNA downstream 1293475 56791621 ~ 56873359 (-) False smoc2
XM_021605716.2 mRNA downstream 1293476 56791621 ~ 56873358 (-) False smoc2
XM_021605735.2 mRNA downstream 1293478 56791621 ~ 56873356 (-) False smoc2
XM_021605811.2 mRNA upstream 1339 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA upstream 1339 58169490 ~ 58282803 (-) False LOC110525582
XM_021605857.2 mRNA upstream 1339 58169490 ~ 58282803 (-) False LOC110525582
XM_021605866.2 mRNA upstream 1339 58169490 ~ 58282803 (-) False LOC110525582
XM_021605840.2 mRNA upstream 1339 58169490 ~ 58282804 (-) False LOC110525582
TU70239 other downstream 768346 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1103986 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1103986 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1632859 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2012916 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 616591 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 976222 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2262056 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3514127 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3813580 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile