RNA id: XM_036980792.1


Basic Information

Item Value
RNA id XM_036980792.1
length 1991
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110532479
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58353645 ~ 58535096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGAGCCGTTCGTTCGCGAATAATCCATCACTAGGAAGAAGAAAATTAATATGGCAGCAGGTAGCTCCTGCACGATAGTGGAATATTTCGGGGGCGATGACGGCTACCGCTGTGGTTATTGTAAAAATGAGAAGGGTAACTTCTCTCATGGGATGTGGTCCCACGCCATGACAGTACAAGACTACCAGGATCTCATAGACAGAGGATGGAGACGAAGCGGGAAGTATGTTTACAAGCCCATCATGAACAAGACCTGCTGTCCACAGTACACCATCAGGTGTCATGCCTTGAACTTTCAGCCATCTAAAACCCACAAGAAGATCCTGAAGAAGATGAGCAAGTTTCTGTCTAAAGGGGAGATGCCAACGGAACAAGGCGATGGGGAGCCCATGGACTCGCTGTGTGAGGAGGGAGGACTGCACGGCCCTGTTAAAGTCTGTCACTCTGAGGTGGCGAGTCCTGTGGTCACAGCCATTCTGACTGAGGAGGGAGACACCACACCAGCCGAGTTTGAAACCGCTAGAAAAGACCCAGTGTCTATTCCAGACGGGAGAGGACCAGAAACAACCCCCAAACCGGggGTAGGAGCGGACCCCGGCAGGCCGTTGTGTAGGAAAGCCAAGGAACTGAGGAAGGCTCGCCGGCTGCAGAAGGAGCAGAAGAGACAGGTGGGGGGTGGAGTCCCGGCCTCTGCGACCTCTAACCCCGCCACGCCCGTCCAGCTCACCCAACCCAAAGCCCTGGAGGAGTTCATCAACGAATCTCTGCCCGATAGTCCTCTGCACCGCCTCGAGGTGAGGCTAGTGCGCTCCAACCCCCCCAGTTCACAGTTCAAAGCCTCTTTCGACGCCTCCTACCAGGTGTACAAACTCTACCAGATGGCCATTCACCACGACCCTCCAGACAAGCCCACCGAGAGCCAGGTGAGGCTAGTGCCCGTCAATGATGATGATCCTCAGTTCATGGCGACCTATGAGCAGTCGGCAGCGCTGTACGCACGCTACCAGATGGCCGTTCACGGCGACACCCCTTCCGAGTGTAACGAGAGTGAGTTCAGGAGATTTCTCTGTGACTCACCACTTGAGATGGAGACGCCTCCGGATGGACCAGCGGCGGGCTACGGTTCCTTCCACCAACAGTACTGGCTGGATGGCCGCATCGTGGCAGTGGGAGTAGTGGACATCCTGCCCACCTGCGTGTcctctgtctacctgtactaCCACCCCGACTTCGCCTCTCTGTCGCTGGGCTCCTACTCTGCACTCAGGGAGGTTGCCTTCACCAGGCAGCTGCAGAAACAGTCCCCCAAGCTGTGCTTCTACTACCTGGGCTTCTACATCCACTCCTGCAACAAGATGCGATACAAGGGGCAGTACCAGCCTTCAGACCTCCTGTGCCCAGAGACATATGTCTTTGTGCCCATAGAATGCTGCATCCCCAGCCTGGAGCAGACCCACTACGCACGCTTCAACCAGGACCCCGACGCAGgTGACACACACGTACTGAAGGACCTGGGTCGTGCTCTGGTGCTGTACAGACGGACGGTCATGCCCTACGCCGCCTACGCCCGCAAACGCAAGTGCTCCAACGACGAGATGGAGGTGGCGCAGTACGCTGGCCTGGTGGGCCAGGTCTGTGCTGAGAGGATCCTGCTATACCGGGCGTAACCCACTGGGGGCGCCACCGCCACCCTGCACCTTGATCCGctcgtgtctctgtctgtcccgcTGTCTTTGTAAGTGCTTTCCACTGCTTCACTCTACAATAGCCTCACCAAGTTTAGCTCTACTACACATAGGCCGAACCAACACATTCAAGTATGTACCTGCTTTCAGGaagaattcacaccccttcactttttttcacattctgttgtgttacagcctgtattttaaatggattaaattgagattgtgtcactggcctaaacaTAATACCCCAgaatggaattatgttttaataaatgtttagaaattaattaaaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71724 lncRNA downstream 1901 58347293 ~ 58351744 (-) True G64748
TU71868 lncRNA downstream 16565 58336727 ~ 58337080 (-) True G64891
TU71863 lncRNA downstream 23689 58329735 ~ 58329956 (-) True G64886
TU71861 lncRNA downstream 25259 58328186 ~ 58328386 (-) True G64884
TU71857 lncRNA downstream 27936 58325502 ~ 58325709 (-) True G64880
TU71968 lncRNA upstream 50190 58585286 ~ 58586678 (-) True G64988
TU72038 lncRNA upstream 128854 58663950 ~ 58664149 (-) True G65057
TU72039 lncRNA upstream 129311 58664407 ~ 58664627 (-) True G65058
TU72041 lncRNA upstream 134438 58669534 ~ 58671224 (-) True G65060
TU72054 lncRNA upstream 152931 58688027 ~ 58688267 (-) True G65072
XM_021605831.2 mRNA downstream 70840 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 70840 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 70841 58169490 ~ 58282804 (-) False LOC110525582
XM_021605811.2 mRNA downstream 70842 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA downstream 70842 58169490 ~ 58282803 (-) False LOC110525582
XM_036980829.1 mRNA upstream 30134 58565230 ~ 58569141 (-) False LOC110525605
XM_036980823.1 mRNA upstream 30134 58565230 ~ 58569152 (-) False LOC110525605
XM_021605882.2 mRNA upstream 30134 58565230 ~ 58569247 (-) True LOC110525605
XM_021605965.2 mRNA upstream 56011 58591107 ~ 58599375 (-) True habp2
XM_021605977.2 mRNA upstream 64064 58599160 ~ 58613936 (-) False LOC110525652
TU70239 other downstream 955157 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1290797 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1290797 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1819670 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2199727 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 249646 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 609277 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 1895111 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3147182 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3446635 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile