RNA id: XM_021606092.2


Basic Information

Item Value
RNA id XM_021606092.2
length 4253
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110525695
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59144373 ~ 59199471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttttggcataccaTCTCCAGTCATACTATTACCATTAACCATACTACATGCTCAATTTACGTCACGAATAGTACGGTCTGTGCGGTTACAATGAGTATTCGAACAATGAGTATTCTGTGGGTAAAGTGCGCGAACTTCAACATACAGAAGAAAAACGATAACCCATACACCGACCAGCAAACTGGTGAAAACAAAATATGACGTAATTTTACCTCTACGCAAAGCCTGCTGGGAGCATACGCTTTCCAGAGGACATTTTGGATTTAAAGGGACTGGTCCAGCTGTTAGTCTCAGCTCTCGGTCCCCCCTACGGTAGACTAGACGATGTCCACGATGGTGTACCCAAGGGAAGAGAAGCTAGAGAAGCTGTCCCAGGAGGAGATAATCTCCAACACCAAGCTGGTGATCCAGGGCCTGGAGGCATTGAAGAATGAGCACAACTCCATCCTGCACAGCCTGCTGGAGACCATCAAGTGCCTGAAGAAAGATGAGGCTAACCTGGTGCACGAGAAGTCCAGCCTTCTGCGCAAGTCTGTGGAGATGATCGAGCTGGGCCTTGGAGAAGCACAGGTGATGATGGCCCTGTCCAACCACTTAAACGCGGTGGAGTCTGAAAAGCAGAAGCTGCGAGCCCAGGTGCGTCGGCTGTGCCAGGAGAACCAGTGGCTGAGGGACGAGCTGGCCAACACACAGCAGAAGCTGCAGAAGAGCGAACAGAGCGTGGCacagctggaggaggagaagaagcacCTAGAGTTCATGAACCAGCTCAAGAAGTACGACGAGGACGTCTCACCCACTGAGGAGAAGGATGGCGAGCCACCAAAGGACTCTCTGGATGATCTCTTCCCCAACGATGAAGAGGAGCAAGGCCAAGGCATGCAGCACCAGCACAACAGTGCTGCGGTGGCCGCAGCCCAACAGGGAGGCTATGAGATCCCAGCCCGCCTGAGGACCCTCCACAATCTGGTGATCCAGTATGCCTCCCAGGGGCGCTACGAGGTGGCCGTGCCCCTCTGCAAACAGGCCCTGGAGGACCTGGAGAAGACCTCCGGACACGACCACCCTGATGTCGCCACCATGCTCAATATACTGGCCCTTGTCTACAGggatCAGAACAAATACAAAGAGGCTGCCCATCTGCTCAACGACGCTCTGTCCATCCGGGAGAAGACTCTCGGCAAAGACCACCCTGCTGTTGCTGCTACACTCAACAACCTGGCCGTGCTCTATGGAAAGAGGGGCAAGTACAAGGAGGCCGAGCCACTGTGCAAGAGAGCTTTGGAGATAAGAGAAAAGGTGCTGGGCAAGGACCACCCAGATGTGGCTAAGCAGCTGAACAACCTGGCCCTGCTGTGTCAGAACCAGGGCAAGTATGAAGAGGTGGAGTACTACTACTGCCGCGCCCTGGAGATCTATGAGTGCAGACTGGGTCCCGACGATGCCAATGTGGCCAAGACCAAGAACAACCTGgCATCCTGCTTTCTCAAGCAGGGGAAATACAAAGAGGCTGAGATTCTGTACAAAGAGATTCTGACCCGTGCCCATGAGAAAGAATTTGGATCTGTCGATGCTGAGAACAAACCCATCTGGATGCACGccgaagagagagaggagatgagtaaGGGCAAGCACAGAGACAACACCCCGTACGGCGAGTATGGAGGCTGGTACAAGGCCTGCAAAGTGAACAGCCCGACAGTGAACACCACCTTGAGAAACCTGGGAGCTCTGTACCGCCGGCAGGGCAAGCTAGAGGCCGCTGAGACCCTGGAGGAGTGTGCCATGAGGTCCCGCAAGCAGGGCATAGACCCCATCCAACAGACACGTGTGGTGGAGATCTTAAAGGATGgcgagggagacagggagaggcggAGGAGCCGGGACAGCCTGTCCAGCGTCAAGTACGAGAGCGGCTCTGAGACCGTCGAGGAAGTGAGTATGGGCGTAGAGTGGAATGGGGATGGTAGTGGGGCGCTACAGCGCAGTGGTTCCCTAGGGAAGCTAAGGGACGTCCTGCGTAGAAGCAGCGAGCTACTAGTGAAAAAACTACAGGGCAATGGACCTCCAGAACCAACCAGAACCAGCACCAACATGAAGAGAGCTGCCTCCCTGAACTACTTGAACAAGGCCAGTGACCTAGATGGTTTCCAGggtCCAGGCATCAGCAGGCTAAAGGAGAGCCGTGGCCTGAGCTCCAGCACTGTAGATCTGTACAGCGGAAACTGAGAAATGAGCAACATACTAGCACACGTTACTCCTGTCTCAGCCCACCATAATAACCACTGCCCCAAAGAAACATCTACCTACTACACCAAGTCATCTCCCAGAGCCAAAAGCCCAAAGATTCAGCGACACCTCGATCTCTGCTACCACAACCACTTTCCTAAAGACACATCCATGTTGCTCTAAAGTCTTCTGAGCCTTGAACCCAAGGCAACCATGTGGTTGCCTGTTTTTTTCAGATACTCTGGTCCCAAAGACATGCCCGCTTCTCCCTCTCAGTAATCAGGACCTCCTCCCAAAGACCCCCCTGCCACACCCTCCACCGGCGAGGGAATGTTTTCTGGGCTAGAGGTATACAGGGCATGTTGGCTATGGAACACATTAAAAACAGGGCATTTCCTGAAACAGGCGTGTGTCCCTATAGGCTATTGGGATCAGACTGGGAAACTACCCAGTAAGAAACACACCTCTTGTGAAATGTTTCCTGTATACCCTTAGTAAATaactataggtgtgtgtgtgtacacggtTTAGTTACATCTGGAATCTCTGTTGCCATTGCTGTGCTTTTCTGTAATTGCGATATGTTATACATCTCTGTAAAATACTTTTGTTTAATTGTGCTTAATCCTACAGTTTTGATTTATTATTCCTGTGCCGCTATTCCTTGTTTTAACTTTGCAAATTGTTTGCATTTTTACCTTGTAAAACAAAaacggaccccccccccccccccagatagaGCTCACTACATGTTGGTAGGAAATTGGTTAGCTGTCATTCTGGCAGGATTTACATAACCTTAAGATTTATTAACCCTTTAGTTGCCTATTGAGATTGCTAGGGAGACAGGGTGTTGGTAGAAAGTTTTGGATAATAGGGcgaaaaaaaattaaatactgtGTGACTAGTATAGGAGGGTGtcctaaatggcatcctattccctacatagtgcgctacttttgaccagggccctcctatgggccttggtcaaaagtagcatactaaatagagaatagggtgccatttgggaagtaaCCATAGATAACAGGGTTGATGTTAAGCACATTGCTGCCACCCACTGGTACCATGGGTGTTCTGAAGTAAGATGCTTGAAAAGTCACTGAATTCACCAGATGGCTCCACCCAGAATGAGGTATTGAATTTTACTGTCTGATGTTATGATCACCACCAGCAGGCACTCTCTTAAGATTATGGTTTAAATTAGAGTTACTTAGGATGATACATTTCTAAATGTGTATATATTATTCTTTTTTTGGGGTGATAATTTTGCACAACTCTTGGATGGGtctctatttttttatttacattttactcatttagcagacgctcttatccagagtagaCATACAGTAGTATGAGTGCATAGTGAGTGCATAATTTTCATATTTTGTTTGTACTGGGCTCCCATGGGAAtttaacccacaaccctggtgttggaAGTGCCacactaccaactgagccacatgggatcAACTGTAATGTAAAGAAAATCAACATTGAACATAAATGGCATGTTATGTAATTGTAAAGGAGTTGCTTGGCTTGTTGTGTGTTTGGTCATATTCACTAGGCACAAAATGAAAGAAAGCACCTCACCGTTTGACTGTTATCTGAAAATGTACAAAAGGAAACACTTTTTCATTTGACGTTACACAAAGTCTTGAAACGTTTTGAaacagtgtgccctaatgaatacaaccttGTTCAACACTTTGTTTTCGTTGTCCTTTTAACACTGGTACATATTGGGTATCTGCATAGTAGTTTGACAGATATCTGTTCACACTTTTCATAATCTGGGTTTGTGATTCATCTTTTGTACTTAAAAGCCATTCAGGTTCAGCTGAACAATATGCTGCAATGCAGCTGCTCTAGTAAGGTTCTGTCTGTCTTGTATCTATTTTGGTTCTTACATGTTATACTGGATATGTCATCTGTACATCTGTCTTTTCCACTGTCGGTTCTGCCTTTCTGTCTACCAATAAAAATGTGTTCCCCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72197 lncRNA downstream 213786 58863756 ~ 58930587 (-) True G65188
TU72142 lncRNA downstream 372526 58771543 ~ 58771847 (-) True G65140
TU72074 lncRNA downstream 373336 58714310 ~ 58771037 (-) True G65091
TU72063 lncRNA downstream 441281 58702692 ~ 58703092 (-) True G65081
TU72056 lncRNA downstream 450908 58693249 ~ 58693465 (-) True G65074
TU72440 lncRNA upstream 28487 59227958 ~ 59228740 (-) True G65397
TU72463 lncRNA upstream 82519 59281990 ~ 59282189 (-) True G65419
TU72464 lncRNA upstream 82853 59282324 ~ 59282597 (-) True G65420
TU72477 lncRNA upstream 105375 59304846 ~ 59305177 (-) True G65433
TU72826 lncRNA upstream 111091 59310562 ~ 59312366 (-) True spef1
XM_036980912.1 mRNA downstream 10044 58924580 ~ 59134329 (-) True LOC110525690
XM_021606005.2 mRNA downstream 230026 58838261 ~ 58914347 (-) False LOC110525667
XM_021606016.2 mRNA downstream 230026 58838261 ~ 58914347 (-) False LOC110525667
XM_021606030.2 mRNA downstream 230026 58838261 ~ 58914347 (-) True LOC110525667
XM_021606023.2 mRNA downstream 230027 58838261 ~ 58914346 (-) False LOC110525667
XM_021606148.2 mRNA upstream 13109 59212580 ~ 59234633 (-) False LOC110525737
XM_021606138.2 mRNA upstream 13109 59212580 ~ 59248510 (-) True LOC110525737
XM_036980996.1 mRNA upstream 110835 59310306 ~ 59314571 (-) False spef1
XM_036981009.1 mRNA upstream 110835 59310306 ~ 59314586 (-) False spef1
XM_036981000.1 mRNA upstream 110835 59310306 ~ 59314590 (-) False spef1
TU72149 other downstream 358756 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1745885 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2081525 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 2081525 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 2610398 56524970 ~ 56533975 (-) True G61978
TU74240 other upstream 1230736 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2482807 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2782260 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3212051 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 4077737 63277208 ~ 63277752 (-) True G70013

Expression Profile