RNA id: XM_021606148.2


Basic Information

Item Value
RNA id XM_021606148.2
length 1935
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110525737
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59212580 ~ 59248510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCGATTCAAGCGATTCATCAAGGGAGATTTTAAACCCGAGGTTTGGGACGGAGAGTCCTTTTTGGCTGGTTTGTCTGAGGCGGCCAACAGGTCTGTTACACAGAGTGAAACTGTTACTGAGACAAAAAGACGCACACCATGCCAGCAGCACGcCCTAATTCTCTGTTCGGGATGGGGAACCCCCTGCTGGACATCTCAGCCGTCGTGGACAAGGACTTCCTGGAGAAgtaCGGTCTGAAGCCCAACGACCAGATCCTGGCCGAGGACAAGCATAAAGCATTGTTTGAAGAGATTGTCAAAAAGTTTAAAGTAGAGTACCATGCCGGAGGAGCTACACAGAACTCTATAAAAATCGCCCAGtggatGATCCAGGATCCCCACAAGGTGTGTACGTTCTTCGGCTGTATCGGAGAGGATAAGTTTGGGGAGATTCTGAAGCAGAAGGCAGACGAGGCCCACGTGGACGCCTACTACTATGAGCAGACAGAGGAGCCTACAGGGACCTGTGCCGCATGCATCACCGGAGACAACAGgTCCCTGGTAGCTAACCTAGCGGCAGCTAACTGTTATAAGAAGGACAAACATCTGGACTTGAAGGAGAACTGGAAACTGGTGGAAAAAGCCAAAGTTTACTATATCGCTGGTTTCTTCCTGACGGTGTCTCTGGAGTCCATACTGAAAGTGGCCAAACACGCTTCTGAGAACAACAAGCTGTTCACTCTGAATCTCTCCGCTCCCTTCATCTCTCAGTTCTTCAAAGATGCCCTCATGGAGGTCATGCCCTATGTGGACGTGCTGTTCGGCAACGagacggAGGCGGCCACGTTTTCAAAAGAGCAAGGCTTTCAGACTGAGGACATCGAGGAGATTGCTAAGAAGGCCGAGGCTCTGCCCAAAGTCAACAAGAAGAGACCGAGAATCGTTGTCTTTACTCAGGGGAAGGACGGAACCATCATGACCAAaggaggtGACAAGGTGGAGACGTTCCCAGTGCTGAAGATTGACCAGAAGGACATTGTGGACACAAATGGAGCCGGAGATGCCTTTGTAGGAGGATTCCTGTCAGAGTTGGTCCAGGACAAGGAGTTGGAACAGTGTGTGAAAGCAGGACACTACGCTGCCAACGTCATCATCAGACGAGCAGGATGCACCTTCCCCGAAAAACCAGACTTCCACTGATGACCTGTAACCTTAATTGCTGACCTcttacccctacccctaacccatcCACCCTTACCTTCCAACTGAATGAAACCAGGTCCCCCCCTgtccttttttttctttcaacCATCCATCCATGCCTTCATCCAATCCATCCATATATCTGTCATTGCTTTCATCCCTTCTTCCTTTGTCTTTCTGCAACCAGACTTATGTGCCTATTCTTCTTGTCCTACGCTAGGGGATGCTCTCGGGCCACACTGCCTGATACAGCAGTATCTGTTTATACTGATGTTCAACTGCCCTCCCTAAGGACTGCTGAAGTCTACTGCCCTCTGTAAACACAGTTAGACCTTAGGTACCAACGTAATACTGCCGATTCACAGTTAACTATCAGCCTCTCAATAAACTGTCATGTTTACACACACTGCAGGATGCTGCTGGAATCCGACTGCTGTCCAGTCTTCTCCTTGGAGACCGAGCTAAAGCCAAGTTAGTGAGTCAGGATTAGGTAACAGGTTAGGGACATGGTTAATGGGTTAGTTACGGATGGGTGAACACTGCGCATAGAATTAGTTTGCATTAGATAGGCGGTGTCATTGTGGTTTAGATTTGATCATTGTTTTCATTGATTGATGTTTTATTGTGACTGGAGGCTTATTGAAGCGGAGAAGTGTTGTTGCAGGGTAGTGTTGCTGTAAAACCAAACAGATTCCTTAACCTTAAAGCGCACAGTAAAAGTGTAAAGTTCTCTGTACACTTTGTAAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72197 lncRNA downstream 281993 58863756 ~ 58930587 (-) True G65188
TU72142 lncRNA downstream 440733 58771543 ~ 58771847 (-) True G65140
TU72074 lncRNA downstream 441543 58714310 ~ 58771037 (-) True G65091
TU72063 lncRNA downstream 509488 58702692 ~ 58703092 (-) True G65081
TU72056 lncRNA downstream 519115 58693249 ~ 58693465 (-) True G65074
TU72463 lncRNA upstream 47357 59281990 ~ 59282189 (-) True G65419
TU72464 lncRNA upstream 47691 59282324 ~ 59282597 (-) True G65420
TU72477 lncRNA upstream 70213 59304846 ~ 59305177 (-) True G65433
TU72826 lncRNA upstream 75929 59310562 ~ 59312366 (-) True spef1
TU72833 lncRNA upstream 85416 59320049 ~ 59320271 (-) True G65743
XM_021606057.2 mRNA downstream 13109 59144373 ~ 59199471 (-) False LOC110525695
XM_021606075.2 mRNA downstream 13109 59144373 ~ 59199471 (-) False LOC110525695
XM_021606083.2 mRNA downstream 13109 59144373 ~ 59199471 (-) False LOC110525695
XM_021606092.2 mRNA downstream 13109 59144373 ~ 59199471 (-) False LOC110525695
XM_036980939.1 mRNA downstream 13109 59144373 ~ 59199471 (-) False LOC110525695
XM_036980996.1 mRNA upstream 75673 59310306 ~ 59314571 (-) False spef1
XM_036981009.1 mRNA upstream 75673 59310306 ~ 59314586 (-) False spef1
XM_036981000.1 mRNA upstream 75673 59310306 ~ 59314590 (-) False spef1
XM_021606204.2 mRNA upstream 75673 59310306 ~ 59318124 (-) False spef1
XM_036980984.1 mRNA upstream 75673 59310306 ~ 59318124 (-) False spef1
TU72370 other downstream 57435 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 426963 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1814092 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2149732 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 2149732 57052098 ~ 57062848 (-) False G63093
TU74240 other upstream 1195574 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2447645 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2747098 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3176889 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 4042575 63277208 ~ 63277752 (-) True G70013

Expression Profile