RNA id: XM_021606181.2


Basic Information

Item Value
RNA id XM_021606181.2
length 3410
RNA type mRNA
GC content 0.44
exon number 12
gene id erlin1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59284324 ~ 59299682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTATAAATTCCGTGACCCGGAAGTACTTCAGTGTTGCTGACGAGGTGCTGATGGGTCGATGTCAACTGGATGAAAATACAAGATCTATCGCTTCAATACACTGgtgaGTTTGGGTGAGGATGACGATGACTCACGTGGGGGCAGTAGTTGGTGCAGTAACTGCAGTGATGGCCATCCTGCTGCACTCCTCCATTCACAAGATAGAGGAGGGGCACCTAGCTGTTTACTACAGAGGAGGAGCTTTGCTAACTGCACCCAACGGCCCTGGATACCACATTATGATGCCCTTTCTTACCACCTACAGATCAGTACAGACGACTCTTCAAACTGATGAGATAAAGAACGTGCCTTGTGGAACTAGTGGGGGAGTGATGATCTACTTTGACCGTATAGAGGTGGTCAACATGCTGGTGCCCTCATCTGtgGTGGACACAGTGAAGAACTATACAGCTGATTATGACAAAACTCTAATTTTCAACAAGATTCACCACGAACTCAACCAATTCTGCAGCGTACACACTTTACAGGAGGTCTACATCGAGCTGTTTGATATCATTGATGAGAACCTGAAAATCGCTCTGCAGAAAGACCTAAACTCTATGGCGCCTGGACTAAcgatacagGCTGTCCGAGTCACCAAGCCCAAAATCCCAGAGGCCATCAGGAGAAACTTTGAGCTCATggagggggagaagactCGTCTGTTGGTAACGGTTCAGACTCAGAAGGTTGTGGAGAAAGAAGCTGAGACTGAGAGGAAGAAAGCCGTCATCGAGGCTCAGAAGGTGGCTGAAGTAGCACAGATTCATTTCCAACAGAAGGTGATGGAGAAAGAGACTGAGAAGAGGATCTCTGaaatagaggACACTGCGTTCTTGGCAAAAATGAAGGCCAGGGCTGATGCAGAGTATTATACAGCCGCTAAGTTTGCTGAAGCTAACAGGTTGAAGTTAACACCCGAGTACCTTGAGTTGATGAAGTACCAGGCGATAGCAGCCAACAGTAAGATCTACTTCGGCCAGGACATCCCTAACATGTTTGTTGAGGGACACAGCCCTACCCAGGACCCTGAGCCCCCGAAAGCCTCTGAACAGGCCAGACACTAAGATCCGagactagctgtctgtctgtctgtcagttgaAGGGTTTGAGGGACAAAGGGAGTTTGAGGAGTCATTCCCCTAATTGGGGTGCGTAAAGGCTTTAGTTTTAATTCTAtcggccagagagagagagggagggagaagggggattGGTAAAgaaggatggggagaggaaggagtgagCGAGAAGCATGGAAAGAGAAATTCAGAAAAAAgtgaggggggggtgggggtcgcagggagagagcgagcgggTCTGTCTACACCTGTGTTGAGCAGGCAGTCGGTGGGAAGGATCAGTAAGAGGCATTAATGCTGATATTTGGCCTGGGTTGAGTGTTAGGCAGGTGGCTCTCAGTCGCCCTGCTCTACATGTGCAGCTTTGCATCGGATGCAACTCTTGGCTTTGTTTTTTGGAATTGtataatttttgttgttgtttgatgctTTATGCAAAATAATGAATTTAAATTGAACTTGAACATTAAGTTCAGCCTTACTGTCTAATTTGTTTTTAGCTTAACTAGAATGTAAAGAAGGCAACACTAATTCTGAACTAAAGGGTTTCtggttctgattctaaatggagTTTGGTGTATTGGTACTCCGGTCTCTTTCTAGTCATCCACAGTTTGTGTGTTTGCACGTGTGAGAGAGCAagaaaggggtgtgtgtgtgtgtgtgtgtgtgagactaagGGAGAGCGAAAGGAAACGAGAAATTGTGTGTGAGCCCATACTCCATTCTTACCCCAGAGCAGATCTGAGCCAGGACAATGAGACACTACAAACCTTCAGTCTGTCTGTCGGCACACATGGGTTGGACTTCTCGTAAGCGCAGAAACACCCAGTGGAACTCCTTAGAACTCTTCTTAGAACCTATGTATGGGGGGGGGGACTGATTAAAAATAGTTTTTCTGTAGAGGGCTGCGAGAGGACTGGCTTGTATTGCCATTCTAAGCTAAAGGGCTTCTGGGTAGTGTAGTCTTGGTGTGTATTTTCAGTCGGGAATCTAGTGTCAGTGGAATAGTTGTAGTTAAATGGGTTGATTCTCTGTTTGAGGCTGAGGTTAAAcaaatgatctaggatcagttaaaCTGGCTGGCAGAAGGACACTGAAGTCAGACTTGCCCTTTATTTTCTTTCTGTTTACTGTGAAACACCTCCAGTAGAgaatacaggactactaatacAAGGGCTGTTGACGGTTTGCCTGGAACCACTACACTGTATGTCAGCCATGTGTGGCTATTGAATGCAAAACCAGACAAACCGGCTCCGACTACATTGACACAGGTAGAGCGGAAGGCCGATGCTTTTCTTGCGCCATCGTTCCGTTCAAACTGAGCTGGCTCTAATATTTTATTCTCACATGGTCCATTTCAAAGTTTTCAGCATAATTCCAGGCCAACAACTATGGttgtgtaaccaggccagctcagtacatctTGATTTTACTTCACTCAGTTCAGCTCAGTAGTTTTTAGTTTGTATTTAGTAGGTAGAGAGGTAGCGTTAGTGTTAACTCTCAGGAAAGAGCTTGAGGCGACTAGTGACTTGGGCAGACAGCGTCATactgtattttttatatatatatatatatgtacacgtGTATATCTCATATACGTGTATATCTATATGGCTTGTATATCCCTATATGGTTCTTTATACAGAATGGCTGTAGTGCCACCTTCAGGCTCAGAAATTACAGGCGTAGGAATTGACAGGCTTACAGAGATAGACTTCGGTTCAGTAAAGCTACTCGGGCACTTCAGTAGATTAACCACCACTAACAGGGAAACTACTCTGGAGGAGTGTAACACAGTGGGTTCACAGAGTTAGCCAGCGAACTTTGAGAAACGCTCAGATGTAGGCTAGCTCTTGAATTTCCGGTTTGTTAAGAAAGAAACTCTATCAGTCGTTTGGAATGTTGAGTGAGTCAGTTACTGTGCCAATTTCAAGTGTATATAAACTTGAACATATGAATCCAGAATATTTAGGAAAGTTAGCTGGCGAACTCCTTCAATCCTGCCCTGTGACGTCACGCTACCGTGCTGCTGTTTACTGTACTTGATCTCACCAATCGTCTTTCTCCTATGGCATTGGTGGTGGGTTTAAATTAGAAAATGCAGAAAAGGATGGAATTAAATTTGTCATGGAAATAATTAACACGTTTTTGTGAATGTTACTTTTGTACAATTTTCATAATTTGAACTGTCTTATTTTAAAAGATTTATATGCAACAAAAAGTTCAAGTTTTGACAATGTTCGAATATGTAAAATAAAACCTATTTTGATACcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71690 lncRNA upstream 4011 59275245 ~ 59280313 (+) True G64718
TU71688 lncRNA upstream 11833 59272211 ~ 59272491 (+) True G64716
TU71612 lncRNA upstream 49759 59212441 ~ 59234565 (+) True G64645
TU71611 lncRNA upstream 70506 59212441 ~ 59213818 (+) False G64645
TU71537 lncRNA upstream 236065 59047544 ~ 59048259 (+) True G64577
TU72476 lncRNA downstream 5084 59304766 ~ 59304983 (+) True G65432
TU72487 lncRNA downstream 21122 59320804 ~ 59321015 (+) True G65441
TU72492 lncRNA downstream 27974 59327656 ~ 59327869 (+) True G65446
TU72494 lncRNA downstream 31419 59331101 ~ 59331325 (+) True G65448
TU72502 lncRNA downstream 48673 59348355 ~ 59348657 (+) True G65456
XR_002473818.2 mRNA upstream 72149 59210006 ~ 59212175 (+) True LOC110525756
trnaa-ugc mRNA upstream 222444 59061807 ~ 59061880 (+) True trnaa-ugc
XM_036980882.1 mRNA upstream 446125 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA upstream 446125 58808684 ~ 58838199 (+) True fam160b1
XR_005052202.1 mRNA upstream 1320501 57961716 ~ 57963823 (+) True LOC110525578
XM_021606217.2 mRNA downstream 40857 59340539 ~ 59342276 (+) True si:ch211-217g15.3
NM_001281351.1 mRNA downstream 183799 59483481 ~ 59485882 (+) True cxcf1a
NM_001281354.1 mRNA downstream 289982 59589664 ~ 59628254 (+) False cxcl12a
XR_002473834.2 mRNA downstream 300223 59599905 ~ 59608419 (+) False LOC110525860
XR_005052258.1 mRNA downstream 300230 59599912 ~ 59608419 (+) False LOC110525860
TU71284 other upstream 583945 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 618418 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 696739 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 1061194 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 1061472 58221522 ~ 58222852 (+) False G63959
TU72488 other downstream 24954 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 641804 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 2015192 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 2430083 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3975281 63274963 ~ 63275296 (+) True G70011

Expression Profile