RNA id: XM_036980984.1


Basic Information

Item Value
RNA id XM_036980984.1
length 1223
RNA type mRNA
GC content 0.45
exon number 7
gene id spef1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59310306 ~ 59318124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagaaatgggcGGGGTTTGGACTTTGTGGCTATGGTAACTAATGACGACCATCGTGggacgctagctagctaacgatacAGGCTAGCTGCAAATCGAAGTGTAAAGTTGTCGGATGAAGGACCGGTATACAGAATGGACAAAGAATTAAACGAAGAAATATTGCAAGACTTGTTTGCCTGGATAGACAAAATACCACTGTCCAGACCTAAGAGGAATATAACAAGAGACTTCAGCGACGGAGTGATGGCTGCTGAGGTCGTCAAGTATTTCTTTCCCAAACTGGTGGAGCTTCACAACTACACCCCAGCCAACTCTATACAGCAAAAACTCAGCAACTGGGGCACTCTCAACAGgcaagtgtCGTGTTTCCATGTTGACAGGAAGGTGTTCTCCAAGCTGAACTTCCACATCCCAGAGGAGACCGTGAAGAGGATAGTGGTGAGCACTGCTGGAGTAATAGAGCCTGTCCTGTGTTCGCTCCGAGAAAGGATTGACGACAAGAGACAGCAATGCACTGAAGACAcactactgGATGTGGAATACTACAACAACAGAAACCGAGAGAAACCTCTCACAGAGCCACCTCCcaagaagaaagaggagagggcacacgtacaccaacacacagacaAGACTAGcactgtGCTAGGTTCTCAGGTGGACCCAACCATCCGTCTTGTGCTGGAGGAGAAGGAGCAAGCTCTACTTGCCCTACAGGAGACTgtggagatcctgCAGATCAAGGTGAACAGACTGGAACACTTGGTTCAGCTAAAGGACATGAGACTTGAAGACCTGACACGCCATCTGGAGAGATACAAGGCCAGGGCTAACGTGCCTTGATACACACCGAAGCGGACACACTCAGAAACACACAGCAACTCTCAGACACAACTAGAAACAACAAACACACCTCTCCTTTTTATGAACTACATTTTTCTAACAActaatgcttgttttgctatcaGCCTGTACTTTTCTAAAAGTTAGCACTGAATGTTTTGTGAAGTATTTTTTAATTTGTTGCATTTATTAAATCATAACAGATGATATTGtattgagaatgtgtgtgtgttttctatatatAATGTGCTAGATTGAGGGGACTACTAGACTATAAGGTTTGTAGTGTGGATCTTATGTGTGTCTATTGCTGTGCCCTTATAACAGCCATGTGACCACTAACCTCTGAAGCTGTCTAAATAAAACACTGACACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72477 lncRNA downstream 5129 59304846 ~ 59305177 (-) True G65433
TU72464 lncRNA downstream 27709 59282324 ~ 59282597 (-) True G65420
TU72463 lncRNA downstream 28117 59281990 ~ 59282189 (-) True G65419
TU72412 lncRNA downstream 41922 59179972 ~ 59268384 (-) True G65373
TU72833 lncRNA upstream 1925 59320049 ~ 59320271 (-) True G65743
TU72834 lncRNA upstream 6512 59324636 ~ 59325294 (-) True G65744
TU72835 lncRNA upstream 7726 59325850 ~ 59326050 (-) True G65745
TU72836 lncRNA upstream 9024 59327148 ~ 59327476 (-) True G65746
TU72837 lncRNA upstream 9871 59327995 ~ 59328273 (-) True G65747
XM_021606138.2 mRNA downstream 61796 59212580 ~ 59248510 (-) True LOC110525737
XM_021606148.2 mRNA downstream 75673 59212580 ~ 59234633 (-) False LOC110525737
XM_021606110.2 mRNA downstream 110836 59149641 ~ 59199470 (-) False LOC110525695
XM_021606236.2 mRNA upstream 24198 59342322 ~ 59348237 (-) False fuom
XM_021606228.2 mRNA upstream 24206 59342330 ~ 59348236 (-) True fuom
XM_021606248.2 mRNA upstream 31432 59349556 ~ 59368121 (-) True echs1
XM_036981062.1 mRNA upstream 61688 59379812 ~ 59396461 (-) False mtg1
XM_021606260.2 mRNA upstream 61688 59379812 ~ 59398680 (-) True mtg1
TU72370 other downstream 155161 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 524689 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1911818 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2247458 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 1112083 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2364154 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2663607 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3093398 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3959084 63277208 ~ 63277752 (-) True G70013

Expression Profile