RNA id: XM_021606228.2


Basic Information

Item Value
RNA id XM_021606228.2
length 769
RNA type mRNA
GC content 0.45
exon number 6
gene id fuom
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59342322 ~ 59348237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTGTGTTAGACTAATCAAATAGCCTACAAGCACTCTGATCTCATGACTTACTTCCTGGTCGTATTTTTCCTTCTGTGAAGTGCCTGTGTTATCGAACCTGCTACTATGGTTATTCTAAAAGGAATACCGTCCATTCTGTCGCCAGAGCTGCTGTATGCCCTGGCCAAGATGGGCCACGGAGACGAACTGGTTCTGGCTGATACAAACTTCCCTACCTCCTCCACCTGCACCTGCGGTCCCATTGAGATCCGAGCTGATGGTCTCGGGGCTGCTGAGCTTTTGGAGGCCATTTTGAAGCTATTGCCCCTGGATACCTACGTTCCCAGCCCGGCTGCCGTGATGGAGTTGGTGGACAGTGACAAAAAAAGGGGACTAGCCACTCCTGTATGGGATATCTTCAGACAGAAGCTGGCACATGCTGGGGTACAGGCTCCTCTAGAGAAGGTGGAGAGATTTGCATTCTATGAACGAGCCAAGAAAGCCTTTGCTGTTGTAGCAACTGGGGAGACAGCTCTCTATGGGTGCCTGATACTGAAGAAGGGAGTCATCCCGGGTGAACTACTAGATTGACACACAACAATTAATGTTATCGACGGGGCACAACCAAATTTTGCATTACCTAACAAATTACCTAAGAATTTGAGTTTGCATGTTTCTGAGAAACatctagtttaaaaaaatatattattttaatgTTGATGTCAAGATCCATCTGAAATCTAAAATGCAATGTATCAATTGTAAATAAACAATTTAGTGATTTTTC

Function

GO:

id name namespace
GO:0005996 monosaccharide metabolic process biological_process
GO:0016853 isomerase activity molecular_function
GO:0048029 monosaccharide binding molecular_function

KEGG:

id description
K02431 fucU, FUOM; L-fucose mutarotase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72841 lncRNA downstream 7303 59334780 ~ 59335027 (-) True G65751
TU72837 lncRNA downstream 14057 59327995 ~ 59328273 (-) True G65747
TU72836 lncRNA downstream 14854 59327148 ~ 59327476 (-) True G65746
TU72835 lncRNA downstream 16280 59325850 ~ 59326050 (-) True G65745
TU72834 lncRNA downstream 17036 59324636 ~ 59325294 (-) True G65744
TU72907 lncRNA upstream 105797 59454033 ~ 59458719 (-) True G65815
TU72911 lncRNA upstream 111817 59460053 ~ 59465429 (-) True G65817
TU72945 lncRNA upstream 167311 59515547 ~ 59515901 (-) True G65851
TU72951 lncRNA upstream 177630 59525866 ~ 59526216 (-) True G65857
TU72956 lncRNA upstream 184642 59532878 ~ 59533090 (-) True G65862
XM_021606204.2 mRNA downstream 24206 59310306 ~ 59318124 (-) False spef1
XM_036980984.1 mRNA downstream 24206 59310306 ~ 59318124 (-) False spef1
XM_036980995.1 mRNA downstream 24206 59310306 ~ 59318124 (-) False spef1
XM_036981003.1 mRNA downstream 24206 59310306 ~ 59318124 (-) False spef1
XM_036981000.1 mRNA downstream 27740 59310306 ~ 59314590 (-) False spef1
XM_021606248.2 mRNA upstream 1320 59349556 ~ 59368121 (-) True echs1
XM_036981062.1 mRNA upstream 31576 59379812 ~ 59396461 (-) False mtg1
XM_021606260.2 mRNA upstream 31576 59379812 ~ 59398680 (-) True mtg1
XM_021606278.2 mRNA upstream 57908 59406144 ~ 59422408 (-) False si:dkey-275b16.2
XM_036981078.1 mRNA upstream 57908 59406144 ~ 59422417 (-) True si:dkey-275b16.2
TU72370 other downstream 187185 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 556713 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1943842 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2279482 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 1081971 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2334042 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2633495 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3063286 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3928972 63277208 ~ 63277752 (-) True G70013

Expression Profile