RNA id: XM_036981062.1


Basic Information

Item Value
RNA id XM_036981062.1
length 2817
RNA type mRNA
GC content 0.45
exon number 11
gene id mtg1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59379812 ~ 59398680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATTGCTACATAAACGTTATCATGCACATTTTATCTCACCAACAGTTTCTAATTTGCAATAAGATTAAGACATTCGTCTATGATAGGTTTTTGCTATTCCCAAACGCTACAGCACACACAGCACCCTGCTCTTAGTTAGTGACCATGGCGGAGAGAGCTAAACGTTAAAAAGTGTGGTTACACTTCAGCAGAGTCGATGCTGACTGCTCGTTGCCACTAGTGCAACAACACTTTTGCTCGTTCGTTTCCGCCCTTACAAGCAATCTGTCCAAACATCTATGGAAAGTGCATCATGTACAGGCAGAGAGATGCATTTTGACTGCCTAGCTCGTAGTTCATCTCTCGTTGCCCGGTCTACGTTAGGTATGTATGCTAGCAGTCTAGAGCCCACACACTGGAGTTAACTCAATTATGCGAACATGGGTTCATGATCAAAAGCAACCATTAGCAAGCTGATTGTTTAGCTATGGGTGTATTCATAAATTCAATCACCCATTTTAAAAATGTTGCTAATTTTTTGTTAAACTTGCAGCTACAATGAACCAACCCACTCCTTCCTCTAATACCGCTAGTCCAAGCCAAAGACCAGCCCAAAGCCCCTTCACGCTGGCAGTTAGTGGGAGGATGACTGAGGAGAGGGTGAATGAGTGCCACCTAGCCGTGACCAAGTTCATAGTGAAAAGCCTTACACCCCTTTGCAACAGTGGAGTCCAAGGGCTTTAGGTAACAGTCTGTCAGTAAATATTGAGTTGTATACATTTTTAGGATATAGGACTAACATACAACGCTTTTATACTACTATTACTCcacaatacacaacaacacaacccCAAATATACCCCTCCCTCCAGGAGTTACCTCAGTGACACATTCATTCCTACCTGGTATGGTGTAGAAAAGGCCAATGTGATCACTGAGCTGAAGGATGTTCCAATGCTGGCTATCACATCAGACGGGTGGACCAGACTCTGTCTGGACCACTATCTCACAGTTACAGTTCACTACACAAGCCAGGGCAGTGTagaacagaaggtcctccacaccagggcagtgtacaaATCGCAAACTGGCCAAGTAGTGGCAGAGGAGATCTCAGACATTCTGGAAGAGTTTGAGATAGAGCCGAGCAAGATTGTAGCTGTGACTGTTGATAATGCTGAAAATATGGATGTTGCCATCAAGAGGCTACACGTCCTAAAAATAGGACACATTAAATCTGGCAGTGCAGAAAATCATTAATAAATGGGCAGCCTGAATCAGAGCAGTGGTCGTATGGTTCAAGATGtccaaaacagtcttgaaggaaaagcagcagctCCTTGGTAAGATGCCTGTTCAATCTATTACAGTTTTAAAGTATTATTTTGAAATTCCCACATTTAACAATTTAATTGAATATTCAAGTGTGCGGTAATTAAAtgtatgttgtttttttgttgtttcagGCATTCCGCAACACTCACTCATCCTTGATGTCAAGACCAGACGGAACTCGCTCTATCTAATGATAGAGAGATTCATGGAGCAGTATCCAGCGATCCAAGCAGCAGCCTTGGACCCACGACTGCGAAAAGCAATGACCAAGGACAGCCTGAACCGTCTGAAGGACGAGGACTTTGTCCAGCTCATGGGAATCCTCCATACACCCACACTGTCTGTCATGTGAAAAGAATGCCACCTGTGGACAGATCATACCCATCCTCCAAAAACTGGAAGAGCACTGGGAAGCATGAAGAGAAGGTCTGAAACAGATGAAGGCCAGTGTGAAGAATGTTGACTGCATCCTAGAAATCCACGATGCCAGAATCCCGTTCTCGGGTAGAAACCCTCTTTTCCAGGATAGTCTGGACGTCAGACCTCATCTCCTGGTGCTGAACAAGATGGACCTGGCTGACCTGTCTGCCAAgcatATGATTTTGAAACAGCTTGAAAGACATGGAGTGAAGAAGGTCCTGTTCACAGACTGcctcagacagagagatgacAACGTCAAAAAGCTGGTTCCCATGGTCACAGAATTAATCGAGAGCCAGCCACGCTTCCACCGAGAGGAGAACACCAACTTCTGTCTGATGGTGATTGGGGTGCCCAACGTTGGAAAGTCATCACTCATCAATGCTCTGAGGAGAACCAACCTCAAGAAAGGTCGGGGGTCAAAAGTAGGAGGGGAACCAGGCATTACCAAAGCAGTGTTGACTAGAATACAGGTGTGTGAGAGACCCATCATCCATCTTCTAGATACGCCTGGTGTCCTTCCTCCGAAGATACAGAGTCTGGAGACAGGCATGAAGCTAGCCCTATGTGGAACCATTCTGGACCATCTAGTAGGAGAAGACATCATGGCAGACTACCTACTGTTCTCTCTCAATAGACTGGAGAAGTACAGttacGTGGAGAGGTATGATCTCAGTGAGCCTAGTGATGACATCCAGCAGGTGTTGAAACGTATCGCTGTCAAACTGGGAAAGACTCAACGGGTTAAAGCCATCACTGGAGTGGGTAACATCACCCTCACAGTGCCTAACTACACAGCAGCAGCCTATGATTTCATCAGAGCGTTCAGGAAGGGAGAGCTGGGACGGGTCATGCTGGACTGACCACTACCGCACCACAGACTGACTACAACACATACTGATCACTACCGCAACACAGATGATTGGTCTGGCAGACACACACCGTACTCACAGACTCAGGAGTCTGGTGTCTCACCATAGACCCAGCGGATCAGTAAGAATGCCGACACTGTTGTTTGTACATAATGTACCTGTTAGTGTAAATGCACACAAtcataataaaatgtattttatgtacAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72841 lncRNA downstream 44785 59334780 ~ 59335027 (-) True G65751
TU72837 lncRNA downstream 51539 59327995 ~ 59328273 (-) True G65747
TU72836 lncRNA downstream 52336 59327148 ~ 59327476 (-) True G65746
TU72835 lncRNA downstream 53762 59325850 ~ 59326050 (-) True G65745
TU72834 lncRNA downstream 54518 59324636 ~ 59325294 (-) True G65744
TU72907 lncRNA upstream 57572 59454033 ~ 59458719 (-) True G65815
TU72911 lncRNA upstream 63592 59460053 ~ 59465429 (-) True G65817
TU72945 lncRNA upstream 119086 59515547 ~ 59515901 (-) True G65851
TU72951 lncRNA upstream 129405 59525866 ~ 59526216 (-) True G65857
TU72956 lncRNA upstream 136417 59532878 ~ 59533090 (-) True G65862
XM_021606248.2 mRNA downstream 11691 59349556 ~ 59368121 (-) True echs1
XM_021606236.2 mRNA downstream 31575 59342322 ~ 59348237 (-) False fuom
XM_021606228.2 mRNA downstream 31576 59342330 ~ 59348236 (-) True fuom
XM_021606204.2 mRNA downstream 61688 59310306 ~ 59318124 (-) False spef1
XM_021606278.2 mRNA upstream 9683 59406144 ~ 59422408 (-) False si:dkey-275b16.2
XM_036981078.1 mRNA upstream 9683 59406144 ~ 59422417 (-) True si:dkey-275b16.2
XM_021606291.2 mRNA upstream 42124 59438585 ~ 59507068 (-) True rassf4a
XM_021606312.2 mRNA upstream 115092 59511553 ~ 59516650 (-) False tmem72
XM_021606304.2 mRNA upstream 115092 59511553 ~ 59516732 (-) False tmem72
TU72370 other downstream 224667 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 594195 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1981324 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2316964 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 1033746 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2285817 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2585270 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3015061 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3880747 63277208 ~ 63277752 (-) True G70013

Expression Profile