RNA id: XM_021606291.2


Basic Information

Item Value
RNA id XM_021606291.2
length 2003
RNA type mRNA
GC content 0.45
exon number 11
gene id rassf4a
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59438585 ~ 59507068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCCAACACCAGAATAGCGCAGGGTCAAGGAGGTTTTAAGGGAGATACGAGATAAGGGAGATACAGCGAATACCAGACTGAGACCGCCTGGTTttggaataaaaataaaaaaacgctACCCTCCTTTTGCACTCTGTGATGctgtATGATTGTATCTCAGAATGGCTGACTATGTGAAGCTGGATGAGGAGAAGTTTATCCCAAAGTCAGACATCTTGTCTCTGCTCAGGACCTACAACTGTTACCACGAGGGGAAGAGCTTCCAACTCAGACACAGAGAGgaggagcAAGCACTGGTCATCGAGGGGTTGTTGAATATCTACTGGGGTCTGCGGCGACCAATCAGACTGCAGATGCACGACGACAACGAGAGACTCCACTATGGAGGAgtcaacagGAATGAGAGATCCCAGGTTCTTCCAAAGCAGACAGAATCTAACAACAACATACTCGACAGAACTACTGACCCTGCCTTGACcaGTAGTCTGGAGGAGGACGATGAGGAGGTCCCCCAGCTGCTGCGAACCAGGAGTGATGCCTCCTTCATGGGGGTCACCAGAAGGTCAAAGACACACGCACACTCCGACCTGCAGCACTTACGCTCACACAGATTCTCCATCAATGGACACTTCTATAACCACAAGACATCAGTATTTACTCCAGCGTTTGGGTCGGTCACTAACGTCCGAGTCAACAGCTCCATGACAACACTACAGGTCCTCAACCTGCTGCTACAAAAGTTCAGAgtgGAGAATAAATCAGATGAGTTTGTTCTCTACATGGTCCATGAGTCTGGTGaaaGAACCCCATTGAAGGACAGTGCGTATCCTCTGGTGTACCGTGTGCTTCATGGACCCTGTGAGAAGATCTCCAAAATCTTTATTATGGAGACGGATCTTGGGGAGGAGGTCACACATGACGTGGCTCAGTACATTAATTTTGAGATGCCAGTCCTGGATAGCTTTGTAGAGAAactgaaagaggaagaggagagagagatttctaAACTGACCAGAAAgtACAGCGCACTGAAGTCCATGATTCTACAGCAGCTGGAGGGCATCACTGACACTACTGACCGagtctgagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgttcacAGGACCATTACACTGTTACAGTGAGAGGAAGTCAAGCAGAATGTTTGAGCACTGAGACCTTTCTTCATGTACAACTACAGTTGAACCATAGCATGTGTAGCTTTTTCTAGTAATGAAAACTACAGACATGATGAAAGCTTTCTACCGTAGTGAATGTAATGTAAACAGCAATAAGAATGCAATACTGCCACATCTTGCATCAATGTTTGTCACTTCGCAAATTAACTGTATTCATAGAATTTGTAACTTTTTTGCTACTGTATTGTCTATGATTGAATACATTCCATTGATCTTGTTGTTTACTATTGTTGGTAAAATACTGATTCCTGTATGTCTTAGAGGTCAAGGTCTTCTAAAACTGAGCTTTCCTCGAAAGGCAACATTTCTGTCAAGGCCAATTTCTAATTTAGCCACTGTAACAGATTATAAGAGAGCTACAGGGCGTGCAGGCTTTTTTCCCCCAGCTCTGCACGTCTAACACACATCTCCAGCACCAGAGTTGGAAACCCTGGCCTAAACTTGTGTTCACATAAGTATGCTGCAGGGTTAGCAGACCTGTAAGGCCCATACTGTATTTTACCACacagataaaacacacacacacctcattgttCTCCCACAGAAAGGGGTAGAGTTGTTTCCAGGGTGACTGAAGCAGAGTTAGTATTGTTCTGAGAGTGAGTGACCCtctccacctgtgtgtgtgtgtgtgtgtgtgtgttagagagaaagTATTGGCTAGCCCATCAGGGTTATACAGCAGGGGGGTGGGGATAATATAtattttcacacacacaaacacaaagcatttcactgtatgtaAAAAAGACAGGAGAGTTTTAGTTTGcaattatatacagttgaaaaAATA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09851 RASSF2_4; Ras association domain-containing protein 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72841 lncRNA downstream 103558 59334780 ~ 59335027 (-) True G65751
TU72837 lncRNA downstream 110312 59327995 ~ 59328273 (-) True G65747
TU72836 lncRNA downstream 111109 59327148 ~ 59327476 (-) True G65746
TU72835 lncRNA downstream 112535 59325850 ~ 59326050 (-) True G65745
TU72834 lncRNA downstream 113291 59324636 ~ 59325294 (-) True G65744
TU72945 lncRNA upstream 8479 59515547 ~ 59515901 (-) True G65851
TU72951 lncRNA upstream 18798 59525866 ~ 59526216 (-) True G65857
TU72956 lncRNA upstream 25810 59532878 ~ 59533090 (-) True G65862
TU72970 lncRNA upstream 42800 59549868 ~ 59631392 (-) False LOC110532486
TU72971 lncRNA upstream 42800 59549868 ~ 59643035 (-) False LOC110532486
XM_036981078.1 mRNA downstream 16168 59406144 ~ 59422417 (-) True si:dkey-275b16.2
XM_021606278.2 mRNA downstream 16177 59406144 ~ 59422408 (-) False si:dkey-275b16.2
XM_021606260.2 mRNA downstream 39905 59379812 ~ 59398680 (-) True mtg1
XM_036981062.1 mRNA downstream 42124 59379812 ~ 59396461 (-) False mtg1
XM_021606248.2 mRNA downstream 70464 59349556 ~ 59368121 (-) True echs1
XM_021606312.2 mRNA upstream 4485 59511553 ~ 59516650 (-) False tmem72
XM_021606304.2 mRNA upstream 4485 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA upstream 4485 59511553 ~ 59516732 (-) True tmem72
LOC110532486 mRNA upstream 134711 59641779 ~ 59644285 (-) False LOC110532486
XR_005052269.1 mRNA upstream 509928 60016996 ~ 60024584 (-) False LOC118964951
TU72370 other downstream 283440 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 652968 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2040097 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2375737 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 923139 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2175210 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2474663 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2904454 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3770140 63277208 ~ 63277752 (-) True G70013

Expression Profile