RNA id: XM_021606312.2


Basic Information

Item Value
RNA id XM_021606312.2
length 1892
RNA type mRNA
GC content 0.48
exon number 5
gene id tmem72
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59511553 ~ 59516732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCGATTAGTACCCAGCCACTCACTGAGCGGCTCAGAAAGACTGAGCCCCATGGAGCTGTGTGGATGCTGCCTCTGTTGCCACTGTAACCCCTGGAGCTGAAATTGCATAGTTCATCTGTAGCTACTAAAGCTCACCTGTGAGATTGTACTGCAAAATGTCACATTAATATTGGCTCCAATAGAACCCACAGACTGACGTTTGAACTGGAGAGAGGTGGATTAGAGAAGGAAGAAAGAAGAGTTGTAAAAGAGGAGAGAAGTGTTTGCGCGATGGGCAGCGTGGTGACAGCCTGGTGGGTCGTGGTAGAGGTTGCCTGCAGGATTCTGGGTATTTCTACGTCAGCAGGAGTGGAGACGTTACGACAGGGGAAGTTCCACAGTCTGGCCATCTACCTGCTGGTGTCTGGGGCAGGTATGATGGTGTTTGAGGTAGCCTACTTCCTAGATGCCCTCCTGCAGATGTGTCTGCCtTTCCCCCCAGGGTggcgtgtgtttgtgttgtggggAAAGATGGCTCGTCTTGGAGGCTTTCAGAAGTTCCTCTACTACTCCATGATGTCAGTGGTGTGTTTCCTTCACCCTGTGTTAGTGTGGCATGCTGTTATACCAGGTAACACCACTCTACCAGGCATCATGCTCCTGGTCACAGCCTTCTTCAACTTCATCCTCAGCAAAAATACCGAAACAGTGTCCCCTAAAGACCTGGAGGACAATGTAGGGataacgtctgtgtgtgtgtctgagagaggagggacagaacaTACCTTCTCTTTCCTCCACATGGCGATGGGCAGGAGAGGGGCAGGGCTGGCCTTTGTACCCAGGGAGTGTGGCttgggagtgggggagagaggagagagcagccgGGCCATgctggaggtagagatggagcaGCCAGGGTCAGAGCTAGAGCgagtgaggaaagagaggaatAGACATGTGCATTTTCAGAACAGTGCTACAGAGGAGACAGAAATGGAGGAGTACCATGACTTTGAACCAGAGACCACCTCGGACACCGCTCCTATGATCACGAACTGAACATTACACTACTGTTATTCATTGAAGGCCCAGGACAatatggtggagaagagagactgAGCTCCATTGACATCAGCAGAGCTGTggcacagtggagaagatggCCAAAGACTGCCAGAAGTGGAGAACCTTGTCGGTGCGGAGGAGTGGACGAGTGAGTGTGTGACACTACAGAAGCAATACAGTTGGGGGTCAGCTGGAGcagggcttgaaccagggacctccTCAGACACCGCACATACACTACTATAGTAATGCAGGGGGACAGTTGAGGTGAGGTTTGAACAACGGGCTTTGAGGTTAAAGGTGAATTGTGGTGGTGGTGACTAACGTTTGGATGCTGATGCACATCAGTCAATGACCCAATGCCAAATAATGCATATAATCAATGGTCTATATACTATAGGAGAGTTAACTCATTGAAAACAGACTAACGTGTTTGCTTGCCCACTTCTTTCTTAGATTGAACACATTTCTGTTAGCTAATGGTAATATGAAGACCAGAAACACTGGCTTCGTATGATACAGGTGTGGGCCCCACATTCCACGAGCTGTAGGAGGGTCACACACTACACAGACGTTTGGGAAAGGCTGCTGACCGCACAGTCTTAAGTTTGACTTAATATATTGCATATGATgaagatgataatgatgatgattttAATGGTGATCATAATGAGGATGGCGATGGTGATCATTTAAAGTAAGGGTCTGATTTTAAGCGAGGCAGTCCACTAAGGTAAATGTATGTGCTGTATGGAATCTGTTTTAGCTGCACACGGAACATGTGTATAATGTTTTGCACATGTAGAATGATTTCTATAGTAATAAAACCCCTTTGTACCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72911 lncRNA downstream 46124 59460053 ~ 59465429 (-) True G65817
TU72907 lncRNA downstream 52834 59454033 ~ 59458719 (-) True G65815
TU72841 lncRNA downstream 176526 59334780 ~ 59335027 (-) True G65751
TU72837 lncRNA downstream 183280 59327995 ~ 59328273 (-) True G65747
TU72836 lncRNA downstream 184077 59327148 ~ 59327476 (-) True G65746
TU72951 lncRNA upstream 9216 59525866 ~ 59526216 (-) True G65857
TU72956 lncRNA upstream 16228 59532878 ~ 59533090 (-) True G65862
TU72970 lncRNA upstream 33218 59549868 ~ 59631392 (-) False LOC110532486
TU72971 lncRNA upstream 33218 59549868 ~ 59643035 (-) False LOC110532486
TU72972 lncRNA upstream 33218 59549868 ~ 59631392 (-) True LOC110532486
XM_021606291.2 mRNA downstream 4485 59438585 ~ 59507068 (-) True rassf4a
XM_036981078.1 mRNA downstream 89136 59406144 ~ 59422417 (-) True si:dkey-275b16.2
XM_021606278.2 mRNA downstream 89145 59406144 ~ 59422408 (-) False si:dkey-275b16.2
XM_021606260.2 mRNA downstream 112873 59379812 ~ 59398680 (-) True mtg1
XM_036981062.1 mRNA downstream 115092 59379812 ~ 59396461 (-) False mtg1
LOC110532486 mRNA upstream 125129 59641779 ~ 59644285 (-) False LOC110532486
XR_005052269.1 mRNA upstream 500346 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 510568 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 510568 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 512457 60029107 ~ 60064905 (-) True LOC110525944
TU72370 other downstream 356408 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 725936 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2113065 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2448705 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 913557 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2165628 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2465081 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2894872 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3760558 63277208 ~ 63277752 (-) True G70013

Expression Profile