RNA id: LOC110532486


Basic Information

Item Value
RNA id LOC110532486
length 2090
RNA type mRNA
GC content 0.64
exon number 3
gene id LOC110532486
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59549868 ~ 59644285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgCAATGGgtgacccaggccctgtgtgtgggGGGCTCCCCTTTCTGTGCTCTGCGCTCGCGGGTCAGAGTGACCCAGAACCTGTGTGTGGAGGGCTGGCGCTCTTGCGCTGGCGGGTCAGAGCGACCCTGTCAGCCACTGGCGAGGCGTGTGCCTTCGAGCGTAGTAGAGAGTCTGCGAGTGCGCTCTTGCCCGCAGCTCAGCGGACCCGATCAGTGGAGCCGAGCGGCCATGGCCGCGCGTTTTACGGCCGCGCAGGTTCTAGAACAGATCTTGTCCAGCGTGGACCAAGAAGACTACTCGGAttgccaggaggaggaggaggaggaggaagaggtttcGGAAGACGAAGACGGGGAGGAATACAACCCCGAGCGCCGCGAGGTCGACGatgcctcttctccctcttctgagGGAGAGCAGCCCGAGGAAGAGCCGCCCGAGGACGAGCACGAGGACGAGCGCGAGGACCGCGGCGAGGAAGAGATCTCCTCGGCCCCGGACCAACGGGAGCCGCCGTTGCTGTCGAAAAATGGCAAAATCGAGTGGTACCCCGTGGCCTACGGCCGCCGCCGCGGGGCCCTCGCCATCTGCCACGTCGGGCCGGACCAGACTCCGGGCCCCACGGCCTATGCCGCGACACAGGTCCGCGACATCGCGTCCGCCTTCCACCTGTTTGTCACACCCGCGATAGAAAGGATAATTGTGGAAATGACGAACCTGCACGGGGCCAGAAAATACGGCGACGGCTGGCGACCCATGGACGCCACGGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCGGGCGTCTACAGGTCCCGGGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGAGCCACCATGCCGCTCAAGATCTTTCACAGGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACGGACAAACTCGCGGCCATACGGGAGGTCTGGGACCCCTCTACAACCCGGGGCCCGACGTGACGGTGGACGAGCAACTGGTCCCGTTCAGAGGCCGCTGTCCTTTCCGTCAGTACATCCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtGTACACCGGCAAGGCGGCCGGCGGAGGCCACGAGATGAACCAGGGGATGCGCGTCGTCCTCGATCTGACAACGGGCCTGAGCGGTCGCAACGTCACCTGCGACAACTTCTTCACCTCCTACGACCTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCCAGGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTGGTGTCCTACCTGGCAAAGAGAAACAAGAACGTGCTACTCTTGAGCACGCTGCACACAGAGGGCCACGTCAGCGATCGCCGCGACAGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAACGGCGGCGTGGACAACCTAGACAAGGTGGTGGGCACCTACAGCTGCAGAcggatgactgcccgctggcccctggtcgtCTTCCACAACATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGCAAGCGGAACAAGCGCAGGGTGTTCCtcgagcagctgggaaaggcactcgTGAAGCCGCCGATCCAAAGAAGGCAGCATCTGCCCCTTACCGAAGCGGCGTCAGCGCTTGTCAAAGTCCTACAGAGTGCTATGGCGGCGGCGGCTGCGGCGCCTCGTGATCAACAGCGCCAGGGTCCCGCCGCTGACACGGCCGCTGCCCCGCTCGTTGCCCCGGCCACCGGGGCAAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACTCCAAGACACACACGGTGTGCTGCAGGTgtaagaaatacatctgcaaaggctGTTCACACGCCTACTGTCACACTTGCGCACATTGGGCCTTTAGCCAGGACGGGACAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72970 lncRNA downstream 10387 59549868 ~ 59631392 (-) False LOC110532486
TU72972 lncRNA downstream 10387 59549868 ~ 59631392 (-) True LOC110532486
TU72956 lncRNA downstream 108689 59532878 ~ 59533090 (-) True G65862
TU72951 lncRNA downstream 115563 59525866 ~ 59526216 (-) True G65857
TU72945 lncRNA downstream 125878 59515547 ~ 59515901 (-) True G65851
TU73037 lncRNA upstream 19327 59663612 ~ 59685746 (-) True G65937
TU73084 lncRNA upstream 85562 59729847 ~ 59736154 (-) True G65982
TU73213 lncRNA upstream 216925 59861210 ~ 59861428 (-) True G66080
TU73233 lncRNA upstream 230284 59874569 ~ 59875057 (-) True G66100
TU73241 lncRNA upstream 237167 59881452 ~ 59882036 (-) True G66108
XM_021606304.2 mRNA downstream 125047 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 125047 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 125129 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 134711 59438585 ~ 59507068 (-) True rassf4a
XM_036981078.1 mRNA downstream 219362 59406144 ~ 59422417 (-) True si:dkey-275b16.2
XR_005052269.1 mRNA upstream 372711 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 382933 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 382933 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 384822 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 445705 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 486634 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 856162 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2243291 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2578931 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 785922 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2037993 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2337446 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2767237 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3632923 63277208 ~ 63277752 (-) True G70013

Expression Profile