RNA id: TU72972


Basic Information

Item Value
RNA id TU72972
length 2807
lncRNA type read_through
GC content 0.37
exon number 2
gene id LOC110532486
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59549868 ~ 59644285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGTAAAAAAAACTGATTTTATTTAaacaggcaagtcagtaaagcactcttatttacaatgacggcctacccggaaacagtgggttaactgccttgttcaggggcagaatgacagaatttgactttgtcagctcagggattcgatccagcaacttttcggttacaggtccaaccctctaaccaggggctggctacctgccgcccctgtgttgtgttgatgtgttgatgtagTGTTGCCAATAGTTTATGTTATTACTTTTTACAGTATTGAAAAAAGTATGCAAACATAAAAATGAATACTTTTTATTTAAAGATTACATTTTACTCAACAATCTAGTTTAACATTGAAATGGCTCATGTGAAAAGATCTGGAGACATTATACATTCTAGCACCTTCATATGAACTTGTGTTTGACGTATAAAAACTACAAAAATATAATATTTCttataatatttgttttcactcaAAATGAAAATGTGATGTATCTCATGCTTAAGATTGTTATATGAAAaagtaaagtaaaagtaaagtATTATACCACTAAAGACAATTAGAAAAACAACAGTTGACTAACTGTAGTAGACCAACAGTGTGGATCATATTCTTGTTCTCATTATAACATTCTAAACTTACGTATTGTTAATGAATGAATATGTTGGATGTAAAGTGCATCGGTATCCaaaataacatacagtatatgacaTCAATAGGTAGTCAAGCCAATCTATCTACTATTACCAtttctactattactattactatactgCTACTAACGCTAGCACACTAAAACTGCTGATAGATTTGCTTTTCATAGTGTCTGGTTTGCTAAATATGAAACTTTATAATTTCCATAATGTTTCATAACACATTGACGTGGTAGTCTGTCTGACAACAAATTTAATTTGGTTAACCCACTGCATGTGTTGTCCAGGATTTTAGTTCATACTGTACGGGACTAGTCAATGTCAGAATTAAAGGGGAACCTGAACTACGACGTTGGCAAGCCGTGGGTTGTTAGTTATCTGACTGAACTTTCCCTTTATGGTAGTCTGGATTAACTGTTCCTTTAATAAAATCTGAACGTACTACCTTTAATGTTTCCATAACCATGACGCGGCTACGGACTACTACTTTTTTATTGGTCGCTCAATAAGCAGAGTTCTGACTCTAAATGTTGCTAATTACCAAAGTTGCTCAGAGAATAACATCACAGACTATGCTTCACATTAAGACTCTTTATATGAAATACTTCAACATCCAGCATGGCTggatacaaaaaataaaatattggtTGAGTCGGTACTAGACAGGGATGTCCATTCACTCCTGTGTGTTCTTAAGCAGACATACTGTAAGTGTGTTCTAGTGTGTTCTAGCCCTGCACACGTGAACATCCCCATGCCTCTTGGATCTTTTTTTTTGCATTGCTGAACCTTGTACACTCTCCAGGACAAGCTGATAGAGTTGGATTGAGAGTTGTGAATTCTGTCATGAATCCTCCCGCATtatctcttcctttccttcctctccataTCTCAGTCCCATCAATACCTACCTAAAGAACAGTTCTAATTCCTAAATGACAGAGAAGCCAGGGGCCAAAACAACTCCAAAAATCTTTACCAATCAAATAGGATAGTAAAAAAACGGTATATACATCATAGATAAAAACATACATGCACAGATATAATTTCACTTGGCGCTAATAGGGGTGGATTCTATAAGTAGTACAGGTGGTTATGGTAGCATTGGTAACAGAGGTGGTGGTTTTGGCAAGCCATGGGTTGGAAGGTTCCGTGATGGACAGGATAAGTGCTGTTCAGCGTGCGTGCCAGGTGAGTAGATGTTACACGCTATACGCCTCACATTACATACAGccgctagtgaaagtctacacaccccttcaCAATTTGCCTTAAAATTACATCTAAAAAAGGGATTACATTAGATTTGTTTCCTActgatctacacaacctactccacatttgATATAAGAAATTTCAAATGACTGAAAAACACAAAATGAGTAAATAgttggtggaagcacctttggcagcgattacagatgtAAATATTTTGAATTAGATTCTACCAACCTTtcacaactcttagggcaacatatgtccattgtttttgtcaaaattgctcaagctcagtgCATTTGCGtgggaatcattgatggacagcaatattcaaaccttgtctcATAATTTTAAAGCACATTTAAGTCAGGAGAGAATGgaccattcaggaacattcaacaCCTCTTAGAAAGCCATTATAGTGTGTGTTTGGCATAACAAATTGTGTAATTGTCCCACAGAAAAATAAAACTATCCAAGGATTGGGTTTTCAGAAGACCGATTCAGGTTTTCCTCTAACATTTTACCTGGGCTTTGCttctttcatatttattttgatcctgacaaactccccagtccttgccgatgacaagcatacccataacatgatgctgccgccacaaTACAAAAAAACTAAGGGATCAACAACAGTGCATTCCCTTCACATTACTGGCCTGTATGACAAAGCGAAAAGAAGGAATCAAAGTCAAAAcaaatatgaaaggagcaaacTCCAGGTAAAAAGTTAAAGGAAAACCTACCTCAGTATTTTTCAGAAAGACAATTACACAATGTTTTATGTCAAAGACATCAGAATTGCTTTCCACTTggtgttgagtgttcctgagtggtctagaCCTGACTTACATTTTCTTGAAAATCAGAGACAATGTTTGAATATTTCTGTCCATAAATGATCCCCAAACAAATgtactgacctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72956 lncRNA downstream 16778 59532878 ~ 59533090 (-) True G65862
TU72951 lncRNA downstream 23652 59525866 ~ 59526216 (-) True G65857
TU72945 lncRNA downstream 33967 59515547 ~ 59515901 (-) True G65851
TU72911 lncRNA downstream 84439 59460053 ~ 59465429 (-) True G65817
TU72907 lncRNA downstream 91149 59454033 ~ 59458719 (-) True G65815
TU73037 lncRNA upstream 32220 59663612 ~ 59685746 (-) True G65937
TU73084 lncRNA upstream 98455 59729847 ~ 59736154 (-) True G65982
TU73213 lncRNA upstream 229818 59861210 ~ 59861428 (-) True G66080
TU73233 lncRNA upstream 243177 59874569 ~ 59875057 (-) True G66100
TU73241 lncRNA upstream 250060 59881452 ~ 59882036 (-) True G66108
XM_021606304.2 mRNA downstream 33136 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 33136 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 33218 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 42800 59438585 ~ 59507068 (-) True rassf4a
XM_036981078.1 mRNA downstream 127451 59406144 ~ 59422417 (-) True si:dkey-275b16.2
LOC110532486 mRNA upstream 10387 59641779 ~ 59644285 (-) False LOC110532486
XR_005052269.1 mRNA upstream 385604 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 395826 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 395826 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 397715 60029107 ~ 60064905 (-) True LOC110525944
TU72370 other downstream 394723 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 764251 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2151380 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2487020 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 798815 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2050886 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2350339 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2780130 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3645816 63277208 ~ 63277752 (-) True G70013

Expression Profile