RNA id: XM_021606349.2


Basic Information

Item Value
RNA id XM_021606349.2
length 5677
RNA type mRNA
GC content 0.50
exon number 24
gene id ercc6
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59725618 ~ 59778737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGATGTGTAATCGCCAATATACCATAGAAAATAAGTGTAGGTGGTGGTAATGccacatttattggatgccaaccgccgttaaacttcatcgaagaagaagaaaaaaaaaaatcttaaaatgTAATTTTAAACCTATCTACACGgttaaccttatgcctaactctAAATTAAGactaaaaagcacatttttgttttcatacgTTTGTATAAAAAAAGTATACGATATAgcccattttgactttgtggctgtgccatctagtggaaagcatcaCAATAGGAGTTAGGTTATGTAACTTGGCGATTTATGCAACAGGATGCCAGTAGAAAATACTGAGAACCAGGTTCCTCTTATCCTCTCCAACCCGGCTAGTGCTGCTCTCACCccgggaggaatggaggaggatgGGGCCAACAGAGGAACTGCTGGATGCTCAATCTCCATCACTGGGACCAGCCAGGGGGACACTGAGCAGCCTGCAATGGCCTGCCCAGATAGCACTGGATCTGGGGAGGGCAGCAGTGCCATTAAGAAGTCTGGAGCCCTGCTACACATTGACCGCCAGCTTATCCAGGCTGTGAGTGCCAGCTCCGGGGCTGCAGAGCTACAGGGTCTGGGTGTCGCTGTGTACGACCAGGATGTGTTGGAGCAGGGGGTCTTGCAGCAGGTGGACCAGGCCATACACGAAGCCAGCCAGGCTGCAGCCAAGGCCGAGGCGGAGAAGGAGTACCAGTCTGTACTAGACGATGTCAGgtcatGTATGGCAGCTCTGAAGCATATTAATAAGATAATAGAGCAGCTGACTCCCTATGCTACTTCCAGTAAAGACATTAACAGGAAGATTGAGTCTGTCAGACGGCAGAAAGAGAACAAGGAGAAGCAATTGAAGAAGATCAGAGCAAAGCAGAGGAGACTACAGGCCATCCTGGGGGGAGAAGACACACTGAAGATAGAGGCTGAGCTACTGCTGGAGGACGATGTGGACGAAGAGCCCGGCCCATCTACTCTGGGCAGTATGCTGATGCCGGCTCAGGAGACGGAGTGGGAGGAGCTAATCCGGACGGGTCACATGACACCGTTTGGAACGAGGGTCCctcagaaggaggagaagaaggaaccACGCAAGTTCATGCTGTCTGAAAACTCTGGCTTCGACGCTTACCTGGCGGACCAAGCTAAGATGGCGGTGGACAGGAAGAGACCTGCACCCCtaaagcagaagaagaagactgCTGTGGGCAAGGAAGGGAAAAAGACCAAAGAAGCGGCTCTCCCCTCCTACTCTGTGGATAAGAAGCTCCAGAAGCGAATGCGTAAGCTGCAGAGGACCGCTCTGAAGGCCCACTCTAAGGCCCCGGCTAAGAAGGTCACGCCGATCCCCAAGCCCAGGACGAAGCTTGAAGCTGGAGGAGATGAGATGGACAGCGAGGGGTCTGAGTACCTCCCCAGTGATGAACTGATGGACCCcgagagagaagagtgggaggACCGAGATGAGggctggggagaggaggatgaggttgACTACTATGAGTTAAAGCCCTACAGGAAGAAGAGTgaagaaaaaggggggaagaaggggaaaaggagagagtgtGACGAGGAGTATTACCCTGACAGCTCAGAGGAAGACAAGGGTACAGGGAAAAAGGGAAAAGAGAAGATGAAGAAAGACGACGGAGATGTGGAGTTCTACAAACAGAGGATACGGCGGTGGAGGCGGCTgcggctgagagagagggaggagaagagagagagaggagaggaggagagtgaccAGAGTGATGCTGAGTTTGATGAAGGATTCAAAGTGCCTGGATTCCTCTGGAATAAACTCTTCAAGTACCAGCAGACAGGTGTGAGGTGGCTGTGGGAGCTACACTGCCAGCAGGCAGGGGGAATCCTGGGGGATGAGATGGGTCTGGGTAAAACCATCCAAGTCATCGCATTCCTGGCTGGCCTCAGCTACAGCAAACTACGCACACGAGGGTCCAACTACAGgtacCAAGGACTAGGTCCTACAGTGATAGTGTGTCCAGCGACAGTCATGCACCAGTGGGTCAGTGAGTTTCACACCTGGTGGCCCCCATTCAGAGTGGCTGTCCTACACGACACGGGATCCTTCACCCAAACAAAGGAGAAGTTGATATCAGAGATGGCAGCATGTCATGGTGTCTTGATAACGTCGTATTCAGCCGTGAGGATCATGCAGGAGACCCTGCAGAGATACGACGGCTGGCACTACGTTATACTGGACGAGGGACACAAGATCCGCAACCCTCACGCTGGAGTTACCACCGCCTGCAAACAGTTCCGTACTCCTCATAGGTTCATTCTATCTGGCAGTCCTATGCAGAACAATCTGAAGGAGCTGTGGAGTCTATTTGACTTTGTCTTCCCTGGCAAACTGGGCACGCTGCCTATTTTTATGGAACAGTTCTCTGTACCGATCACCATGGGGGGCTACAGCAACGCTTCACCTGTACAgGTCCAGACAGCGTATAAGTGTGCGTGTGTTCTGAGGGATACCATTAACCCTTACCTGCTCAGACGGATGAAGGCTGACGTGAAGGCCAACCTCTCTTTACCTGACAAGAATGAACAGGTTTTGTTTTGCAGGCTAACAGAGGCGCAGCGTGAGGTGTATCAGGGCTATCTGGACTCCAAAGAGGTCTACCAAATACTGAATGGAGATATGCAGGTGTTCTCGGGCCTGATAGCACTGCGTAAGATGTGTAACCACCCGGACCTGTTCTCTGGGGGTCCCAAGATCCTGAAGGGTATACCAGAGGACCAACTGACTGAAGAGGAACACTTTGGCTTCTGGAAACGTTCCGGCAAACTGATGGTGGTGGAATCACTGCTCCGACTTTGGTTTAAACAGCAACACAGAGTCCTGCTGTTCACACAGTCCAgacagATGTTGGGGATATTGGAGGTGTTTGTGAGGGAGAATGGCTACACCTATGTGAAAATGGATGGTACCACCACCATCGCCTCCAGACAGCCTCTCATCGCTCGATACAACGAAgacAAGTCTATCTTTGTGTTCTTGTTGACCACCAGAGTGGGGGGGCTGGGAGTCAACCTGACCGGAGCCAACCGAGTCATCATCTATGACCCCGACTGGAACCCTAGCACtgacacacaggCTCGAGAGAGAGCTTGGAGGATCGGTCAGAAAAAGGAGGTGACTGTCTATAGACTACTGACCGCCGGGACCATTGAGGAGAAGATCTACCACAGGCAAATCTTCAAACACTTCCTGACCAACCGCATTCTGAAGGACCCCAAACAGCGACGCTTCTTCAAGTCCAACGACATCTACGAGCTGTTTACCTTATCTAACCCTGACGGGACGCAGGGCACTGAGACCAGTGCTATAtttgcagGCACGGGTTCTGATGTCCAAGCTCCTAAGAAGCCAGTCAGACCAAGGTCTAACCATAGACACTCTGTAACCAATCACAATGTTAGCTCCACTGGAGGTGGAGCCATCCCTTCCCCATCGCCCCAGCCTGGAGACAGGACCACCCCCCTTCGCAGTAACATCTCTCTCAATAAGAACAACAGGCTGACGGACAGCGAGGAAGCCAACCAGGGCGAGGCAGATATTCCTATTGGACAGTCCCAGACAGAATGTGACACACAGCATTCTAGGGAGGAGGGAAGCAATGCTCATATACtcacagacccagacagagaccAAAACTCCATTCTGacccacaaacacagagactcACCCGTGACCAGCCCAAACCCACACAAACATTCACACACTAACTCTGTCAGTCCCAGCACACAGAAACAACGAGACAAACACAgtccacacaaacacagagagtcTCAAGGACCCGGCCCCAGTCCCTACAAACACCGGGAGAAGAGGAAGCACTGTGACTCGACAGTAGAAGGACCTAAAAACAAACACGGGAATCAGAAACAGGCCAAGGTCGAGGGTCATCGCATCTCTTACCTGGTGAAGAAGAGGAGCTACAAAGGACAAGAGGAGCGTGAGGAGCAGCCAGAGAAACAGGACCAGAGACAGAGCGACGACTATGTACTGGCCAAACTCTTCAAGAAGTCGGGTATCCACAGTGTGATGCAGCATGACTCCATCATGGAGGCGTCTAACCCAGACTTTGTCCTGGTGGAAGCTGAAGCTAACAGAGTAGCTAAAGACGCTTTGAAAGCTCTGAAGGTCTCCAGACAACACTGTAGACTGCCCTACAACCAACCTGCCCCAGCTCCAGCcagGAAGAGGTTTGGTCAGAAGAAAAATCCTTTGCTATCTGCTCCTCCTACTACAGTTGTCCCAGCTCAGGACAAATGCAAGGACGCTGCCATCATCAAGAAAACCATCGCTAGGAAACCCATCCCGGGGGGTCACTTCAGTGGAGAAGGGGTAGAGGTGGGAGGCTCTTCCTCTACTACggcccccctctcttcctccactctaCTGGCCTGCATGAAAGCTAGGAACCACCTCAGCCTGCCCCAGAGAGAAGGggatgaaggagaagaggaagaggggggtgCCCGTATCCCCTCAGGCCCTCCTGCCCCCCCTACGGAACACGATGAACTCCTGGTGGAGCTGAGAAACTTTGTGGCATTCCAGGGAGCTGTGGATGGACAGGCCAGCACCAAGGAGGTCCTGGACCACTTCACCCCCAGACTGACCCACACCCAGACCCCTGTCTTCAGAGAACTACTCCGAAACATCTGTAACTTCCACAGGGCAAAGGGGCAGGAGGGGACGTGGAGACTTAAACCTGACTACAGATAATGGGAgtaaggagaaggggagaggagactcACATCTGACTACTTGTAGTGAGGGtgaggcagaggaggagaagtCTGGGTTGATGGAGAGGAACTTGAggctaaaaaaaaaataattttgacTGATGGCGAGGAGataggaaaaagagggagaaggggaccTGAGTTACTGTAGTAGTTGGGTTGGGGGGGTGCTATTAATGAAAATGTcatatttatttgtttataccTGGGATCTACTTGAATTCAGACATTTTACATGTAACTGACATTGTAGCTAGAAATCGAATACTGTTATTGTGGCAGCAGGAAATTATGCAGATGTTTTTAATTCAAAATAAGAGTCCCCCTACAAAGACACGTTAAACTTGGGGAATATGCAGTACAACGGTTTTTCACGGCATTGCAACCACCTTTTAAGAAAATGTCTTGATCATTTGACGTACTTTTATTTTTAACCCCATAGAGACGATTTTCACGTCTTAATCCGCCgatgtcgcacttccgcatctgcggtgaaaggtggcagagctagagctgtgtttgtcagaccatgagacattccAAAATATCAGTCTTCTCACGAAAatgtctgtagcgtctgaacgcCCTACAAACTGTTACCCCTATATGGATAGATGAAACTCTCACGAACACAATGTtgtgctctacgacccccacaagcgtcttgggactcgTTTGAAGTCGGTACAGatgatctgccaacttctgtctgtagcgtctgaacagtttgggctacatgCTAATATATCTCACGAACACTTACACTACCGTTAAaaaatttggggtcacttagaaatgtccttgtttttgaaagaaaagcaacatttttttgtacattaaaataatacagaaatacagtgtaa

Function

GO: NA

KEGG:

id description
K10841 ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72644 lncRNA upstream 94318 59589595 ~ 59631391 (+) False cxcl12a
TU72645 lncRNA upstream 94318 59589595 ~ 59631391 (+) True cxcl12a
TU72634 lncRNA upstream 189748 59535403 ~ 59535961 (+) True G65572
TU72572 lncRNA upstream 277901 59439236 ~ 59447808 (+) True G65519
TU72534 lncRNA upstream 333219 59391152 ~ 59392490 (+) True G65488
TU72808 lncRNA downstream 25517 59804254 ~ 59826592 (+) True G65724
TU73187 lncRNA downstream 59154 59837891 ~ 59838094 (+) True G66057
TU73214 lncRNA downstream 83975 59862712 ~ 59862927 (+) True G66081
TU73215 lncRNA downstream 84293 59863030 ~ 59863267 (+) True G66082
TU73227 lncRNA downstream 90706 59869443 ~ 59869818 (+) True G66094
NM_001281354.1 mRNA upstream 97455 59589664 ~ 59628254 (+) False cxcl12a
XR_002473834.2 mRNA upstream 117290 59599905 ~ 59608419 (+) False LOC110525860
XR_005052258.1 mRNA upstream 117290 59599912 ~ 59608419 (+) False LOC110525860
XR_005052255.1 mRNA upstream 117290 59599913 ~ 59608419 (+) False LOC110525860
XR_005052256.1 mRNA upstream 117290 59599913 ~ 59608419 (+) False LOC110525860
XM_021606368.2 mRNA downstream 7392 59786129 ~ 59793763 (+) True drgx
XM_021606405.2 mRNA downstream 143938 59922675 ~ 59927138 (+) False lrrc18a
XM_036981213.1 mRNA downstream 190775 59969512 ~ 59988857 (+) False si:ch211-223a10.1
XM_021606417.2 mRNA downstream 190778 59969515 ~ 59993651 (+) False si:ch211-223a10.1
XM_021606427.2 mRNA downstream 190778 59969515 ~ 59993651 (+) True si:ch211-223a10.1
TU72488 other upstream 400580 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1025330 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1059803 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1138124 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 1502579 58221522 ~ 58223130 (+) True G63959
TU73321 other downstream 162749 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 1536137 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1951028 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3496226 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 5030852 64809589 ~ 64901624 (+) True LOC110526969

Expression Profile