RNA id: XM_021606427.2


Basic Information

Item Value
RNA id XM_021606427.2
length 2503
RNA type mRNA
GC content 0.46
exon number 10
gene id si:ch211-223a10.1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59969512 ~ 59993651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGGTCTGTCCTGCCAACTGCAGTCTAATCTAACGTGAACGTAGCATGCGTGACTGCAGACAGTTTAAAGACAACCACAAAAAAATCAAAATCCTTGATAGACAAGGGTCTTTACTAAATGAACGTATGATTGTTGTTACAATGTATCGTCTCTGTAAAGATGTGTTGTTTACATTGACAGAGTGATAGTCAGGCGTCACATTATTCGCATTATGCATCCGATGCCTAGGATCGACGGGGACATTTTTGACTGTATCCAACGAGGGAACATTGATCAGTGTGCACATTTCATTGAACATGATCGATCTATCCTCAAAGAGAAAGGCTGGGGTGGTTTCACTCCTCTCCACTTTGCGGCCCTCCAAGGTAACCGTTGGATAGTTAACCTGTTGCTAAGCAATGGAGCTGACCCCAACCTGACCTGTGATGCAGGAATGACGGCCTTCCATTTAGCCTGCAGGCATGGTAATGTATATGTGATGCACCAGATTATGCAGCATGGAGCTGATCTACGCATAGTAGACCATCAGGGAAAAACCGCCCTACACCATGGAGTGTCTGGAGGCAAcatTGTTGCGATGCAGTACCTGTGGGAGACGGGAATGTTCAGGTGGTGCGATGGAGACATGTACAATGTCACACCTCTACACCTGGCTGCTGATGCTGGCAACACCGAGGTGATCCGCTACCTGCTCCGAAACAAGaggtgtATGGTAGAGACTGTGGATGAGGATGGGTTGACAGCGGTCCATGTGGCATCAGAGAGAGGCTGTATAGAGATGTGTTGGACGCTACTACAGAGATCAGGCTTCAGGATACTACACTTGAAGACCTACAGCGGACACACGCCACTGGACCTCTGCAGGCAGGGAAGGACATTCAGACATCTGCAGCTGGCCAAACTACTGACCCGCTACATGAAGGAGCCACCCTTCAGCAAACCTGAAGAGTCACCAACGATGTTGGGGGGCTACGGAGGGATAACGTGCGCCGTCCTCTTCCCTTGGCTGGCCAGGAGTATTTTCTCCCAGTTACACCGCATGACCACCTACCAGAGGTTGGCCAACCCCGTCTACCTAGGGACTATGATAGCTGGACTGTTCCACTCTCTAGTCTGTTTCTACTACAAAATACTGCCGCCTAGCTTGTGGGGGGATAGTGTTCTGGGTCATGTGTCGCTGGTCCAGTTCTCTATGGTTTTGGCCATGTTCTGGAAGATTCTAACCCAGGATCCTGGGGAGCTGGGACCGGGAGATGCAGATCCTCGCTTCTCCTCCATAGCAGACCTGCTGGAGAAAAAACAGAATCCTCAGAGGTTCTGCATCTACTGTGAGttGTTCCAGCCGGACCATACTAAACACTGCAaattgtgtgatgtgtgtgtgagggattACGACCACCACTGCCTGTTCCTGAACCGCTGCATTGGTAGGGGAAACCACCGCCTCttcatcatcttcatcctctCCATGGCCGCAGCACACCTCCTTTTTGTGGCTGCGGCAATTTACCACCTGTATGTGGTGGTGGTGTCCCTTGAGGACCAGTCGTTGGTTAGGGCAGTAGCTAAACAGTTCTGGGTGGTCACATTGACAATAATGAACGCTCTGACAATCCTTTGGGAGGCTTGGCTGTTGACAGAACAGTTTGATGCCATCGCCATGGGGACTACAACCTACTTCAAACCTACCTGCGAGACTCGGCAACGGTCACTAGGACACCGCTGGACAACGGTTCTTACCTTCCTattggaggggaggagacggTTAGATTATGGACAGACGGAGGACAATATCTCCATAGACATTTAGACAATATGCACTCTAAAACCTGTGGTATAATGAAGAACAATGTATATATGAATTCTATATTCCATTCTTGAAACCAACTGGATCATCTGTGAGACTGTTAGCATGGTGAGCTAGAGTCTAGGCATTACCTTGGGAAGCTAATACCGCTATTAAACATATAACAAGTGGTGTGTAGACCAGAATTGGTTCTAATAGATCTTAACATTAGAGATTCCTTAGATTGTCTTTGGGGGTGTGGTCGTCAATATATCTGTTTAAACTTTATACTTGAACATAGGTATTGAAAAATTATACTTTTAAcatatagtagtagtagacagtagACTGAATGCGGAAATCTTGCCAGCTAACATGTCACACTCCTCACATAACGCACTGACTTAACACTATGTCCTGGTTAAGCATTTCCTatgtatacagtacatgtagaGCTAGTTTTATGTGATGCTCTGAGCTATTTTAAAGCTGACAGTACTTCTACAACAATGTAGCTAGTTTATGAACAACTGATCTTGCGCTGTCCTGTGAAGGATCCCACTATTTTACTACAGTATATCCCGTGGAGTTAGctttctgttttacatttttaatgcaTTGGTGTATTTAAAACAGTGTTTCGTGGGAGATAACTGGTCACTTGAAACGTGACCGGTTTCTTTTTACTTAAATAAAAAGTAATATGATGATGTGA

Function

GO: NA

KEGG:

id description
K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73320 lncRNA upstream 30703 59938558 ~ 59938812 (+) True G66187
TU73299 lncRNA upstream 42996 59926193 ~ 59926519 (+) True lrrc18a
TU73278 lncRNA upstream 61526 59907712 ~ 59907989 (+) True G66145
TU73275 lncRNA upstream 61814 59907120 ~ 59907701 (+) True G66142
TU73254 lncRNA upstream 77649 59891511 ~ 59891866 (+) True G66121
TU73351 lncRNA downstream 26826 60020477 ~ 60020701 (+) True G66214
TU73365 lncRNA downstream 33586 60027237 ~ 60091030 (+) True G66225
TU73409 lncRNA downstream 136668 60130319 ~ 60133974 (+) False G66269
TU73410 lncRNA downstream 136668 60130319 ~ 60141209 (+) True G66269
TU73453 lncRNA downstream 182327 60175978 ~ 60176307 (+) True G66308
XM_021606405.2 mRNA upstream 42377 59922675 ~ 59927138 (+) False lrrc18a
XM_021606368.2 mRNA upstream 175752 59786129 ~ 59793763 (+) True drgx
XM_021606358.2 mRNA upstream 190778 59725618 ~ 59778737 (+) False ercc6
XM_036981233.1 mRNA downstream 5759 59999410 ~ 60018695 (+) False LOC110525930
XM_036981240.1 mRNA downstream 6127 59999778 ~ 60018695 (+) False LOC110525930
XM_036981226.1 mRNA downstream 7051 60000702 ~ 60018695 (+) False LOC110525930
XM_036981245.1 mRNA downstream 7053 60000704 ~ 60018695 (+) True LOC110525930
XM_021606624.2 mRNA downstream 189564 60183215 ~ 60218672 (+) True LOC110526033
TU73321 other upstream 27451 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 644386 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1269136 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1303609 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1381930 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1321223 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1736114 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3281312 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4815938 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5922084 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile