RNA id: XM_036981245.1


Basic Information

Item Value
RNA id XM_036981245.1
length 4560
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110525930
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59999410 ~ 60018695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttatttaCACTGCTGAAAAtgttcttaacatttgtcataattacttAAAGCAAAGAAATTGTATCCGCTCTCGTCGGACTTCAGCTGCATATTTTCTGCCATTTTCTTGAAATCTGAAAATgttgtgaagccacgcccattttctgaagaattgtATTATCGGCCCTAAAAGCACAGAGTGTCCAGAGCTGGTATACTTTGTATATTGGcgaatttagtacgacatccTAGAACTCTTGGCATACTAACTCTATCCATACAATAACCAATACGCATGCTACATACTCAATTTACatcacaaatagtacggttagtgcaGTTAGTATGAATATTTCGAAACACAGCTCTAGAGTGTTAGATGTCCACAGAATTTGCTGTTCTAAAATGATACGGACAGCATTTGTAGTCTTTTCTGGGTGCAGAAGGCTAGTGAATGGCTTACCTGAAAACAAGAGTAGAATAGTTTTACATACCTGGCTAGTAACATAAAGTGGACTATGGCAAACTGTgattatgtgtgtttgtgcatgtgcttgagtgtgtgtgcacccttctgtgtctgtctgaataATGCAGCAGGAGTAATATTAGAACTGAGCATGTGCAGGAGATGTCTACCCCTCGCAAAACCTCTAAATCCCTCTAAacatatacatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcattgggcAGGGCTGTAAGTACACTGGGCAGGGCTGTAAGTACACTGGgctagtgagacagagagagaaggggagagagaaaggggaagggagagagagtgtaactggaaaggagacagagggagagtggaaAGAGAGCCCGGAGGGTGCTTGCCCGGAAGGAGATTGAGTGGCAGTgaagaagagagatagagaaagggtgGTGCCTCAGGGAATAAGAAACAGGGTGAGGCagcagagtgagaggagagagcagtgtgCGTGTGACTGGAGGGATCCAGACATGGGACTAGCGCTGCAATGACAACCATGCTTAGCCCTaaaaacagacagacacgcagGGCCCGCTCTAAGAGCATGGTGCTGGGCCGCTGCAGTTCTCCTCTAGGCCAGGAGATGACGTTGAAGGCCGGCTGGCTGAAGAGACAGAGGAGCATCATGAGGAACTGGCAGCTGCGGTGGTTCGTTCTCCACACTGAAGCACTGTACTTCTATAAGGACCAGGATGAGACTAAACCTCAGGGATGCATCATTCTCCAGGGCAGTCAGGTCAGTGAGCTGTCGGCCAATCAGGATGAAGCTGGTCGCCACCTGTTTGAGATTGGTCCAGgaaGCAATGGAGAGAAGGATCGTTCAGGTCTGAGCGAGTCTTTCCTGTTGATGGCTAAGTCTCAGAGTGACATGGAGGAATGGGTCAGAGCCATTCGAAGAGCTATATGGGCCCCGCTAGGAGgagGTATTTTTGGGCAGCATTTAGAGGAGACAATGCAGTGTGAGAGTGGGTGTGGCAGCAGCAGCAAGCCTCTGGTGCCTCTGCTggtgcagcagtgtgtgtgttttatacacCAGCACGGCCTAACGGAGGAGGGGCTGTTCAGAATGCCTGGACAGACCAATCACGTACGAGAGCTGCAGGACGCCTTTAACTGCGGGGAGAAACCACTGTTTGACAGTAACACTGATGTCCACACGGTGGCGTCCCTGCTGAAGCTGTACCTCAGGGAGCTGCCAGAGCCTGTGGTGCCTTTCAACAAATACACAGAGTTCCTCTCCACCGTTCAGCTCCTGGCCAAGGaccaggaggagGGGATCCTTGAGCTGGGCAGGCAGTTGAAGAGTCTTCCTCAGGTCAACTACAACCTCCTCAGATACGTCTGCAGATTCCTAGATGAGGTCCAGTCCCACTCAAGTCAAAACAAGATGAGTGTTCAGAACCTGGCCACTGTGTTCGGGCCCAACATCTTCCGACCCAAGATGGAAGACCCACAAATCATGATGGAGGGTAGTTCCCAGGTGCAGCACCTGATGACTGTACTGATCAGTGAACACTCTCGTCTGTAccaggggcaggcagagactCACAGGGAGGACCAATCTGCCCCTTCTCCAACTCCCTATCCCCGGGTCCCCCCGATTCAGCGCTGCAGGGTAGAATGGCTCTCACAGGAGGACATCCTGCCCCCCAACCCCTCCAAGGACTATACATCCCTGGAACAGACCCCTAACACCCCAAGCCAGGAACCACTTCAACCCCTCCCGACCTCCGCAGTGTCCTCTCTTGACACTGACCGCCCTGGATCAACCCCCAAGGAAAGAACAGAGGGAGATTCTGAGGGAATGAATGGTGGAAGAACAGAAGaaaagacggagagaaagagtgaaggaAAGAGCGGAATAAAACTCTCGGGTGGTAGTGGCGCAGACCTCAGCCCCAGTAAACAGTCCAAAAGCCAGTCTTCATGGAGGTCCTCTTTGAAGGGTAGGTCCGGGTCAGGGGGGGTAAGGGGGAAGTTGGGGGGGTCAGCAGTTGATGTGTCGACAGTCACCGGAGGCCACTGGCTGATGAATGGCCTGACGTCCTTCCGGAGTCACCGACGGACCGCTTCGACTGGCGAACGACTCAAAGAGTCCTCGCTTTGCCTGAAAGAGACACATATAGATTCTCTGCTAGACTCATATACTGAGTCCTCTTTGTCACTAAAAGACTCCCAAAGAAGCATGCTAAAAGACTCATCTCCTTTACATATAGACTCCTCCTGTTCTACTATAGTCTCGTCCTGTCCCAATATAAAGCCCTCCCAATCTGTCAGAAACTCCCCCCATTCCAACAGGCTCTCGACCTATGACAACGTTAATGTCACTCCCTGCAGTCTGAGCTTGCCCATTGGCAGCCCCTCCCCCTGGACCTCTTGTGAGATCCCATTGGCTGAATCTACAGGAAGTGAGCACGGGACACTGATTTCTGGTTTAGGGTCAGGGCCGTCTGTGGCAGGGCCCTCGATACCTGGGGACAGTAGCTCTCCTCTAGAGCTGTGTGTGAGCAGCGCTGACTGGAATGAGGGTGACCCTGGGGATGACAtcacaggtcagaggtcaggggtcaatgAGGGTCTGTTCAGCCTGGTGACGGAGTTGAAGGAGGAGCTGAGGAGACAGAGGATCAGCTATGAGATACGCATACAAAAGTTAGAGGATTCGTGTTCAGGTCTTCGTCTCCAGTCTGGTCGTTTAGAAGAGGATCTAGGCCAGGAGAAGAAGAGGTTATTCATGTTGGAGATCCAACTGGGGAACTCGGAACGCGCAAGGCAAGATGCTGAGACTCGGAATGTTCTCCTgcagaaagagatggaagagtTATTTGCTACACTGGGGAACCTGACCACTGGCACAGATACCAGCTAGACCTGAGCAGACAGCATTAGCCCACCGAGCAAAAGCCTACAAACTGGGCACAAACTGAATGACTCACTGTTGTTTCAACATAATATGTCAACGTATAGCGACATGGAATTTGAGGAAAATGCATtcgatttgaaaaaagtaatgaacgtaaaatgttgttttgagggtgataTTTCAAACACGGGATTATGTCATCCTggtaaccaaatttcaacatagacaaaccttgtatcAAATATGTTGAACTTGTACCTTTAAGAAAACATCAGATCTTCAACCTTATATCCAcgataaaaaaaaataactataggctgggcagcacctcctgcTGGATAATGTATCTATAGCTAccctttggtctcccatccagggttttaaccaagcttAGCCCTGCGGAACTAttatatttgtcactgactatcACTAATGTTCTATTGCGAGAATGATTGTTAAGAGATCTCCACTTATTccacaaactggaattaaagccagactaaatcagtggcacagatggaactatccaagcagaagacacatctccttcaaatgttgatatttggttgtgttggcaaccaaacacaattcaatgtCACTTTTGAAATACTATAAATAGCCTATAAACTTGTCGACAAATTGTATGTTGGATTCACTTCTCtaactcaaccaaaaataaaagttaaagaataggattaagccagtggctcagatgcaACTATCCAAGAAGTAGATACATCTCCTAACACAATTCAATATGGGCCCGATTCAGACGTAGGAAAGGCGTATAtttcctacgcacgcctttcctacacacttctcagtagttcctattcagacttaccttatgcaggTGCGTAAAGGGCTTTGAAGGTGTGGTTCCCTTGCACACTCAGAATAAATGTAATTCGactgctgaaaaccctcccacttgctagctaacatattttcttgtggagttttcattgaatagggttttcagtacattacCCCTTTAAATTAGGTGTACCTTTTCATTTGAATTTTCTCAACAGACTCActagaatatacagtgccttcggaaagtattcagagcccttgactttttccacattttgttacgttacagccttgttctaaaattgattaaatagttttttcccctcatcagtctacacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73320 lncRNA upstream 61892 59938558 ~ 59938812 (+) True G66187
TU73299 lncRNA upstream 74185 59926193 ~ 59926519 (+) True lrrc18a
TU73278 lncRNA upstream 92715 59907712 ~ 59907989 (+) True G66145
TU73275 lncRNA upstream 93003 59907120 ~ 59907701 (+) True G66142
TU73254 lncRNA upstream 108838 59891511 ~ 59891866 (+) True G66121
TU73351 lncRNA downstream 1782 60020477 ~ 60020701 (+) True G66214
TU73365 lncRNA downstream 8542 60027237 ~ 60091030 (+) True G66225
TU73409 lncRNA downstream 111624 60130319 ~ 60133974 (+) False G66269
TU73410 lncRNA downstream 111624 60130319 ~ 60141209 (+) True G66269
TU73453 lncRNA downstream 157283 60175978 ~ 60176307 (+) True G66308
XM_021606417.2 mRNA upstream 7053 59969515 ~ 59993651 (+) False si:ch211-223a10.1
XM_021606427.2 mRNA upstream 7053 59969515 ~ 59993651 (+) True si:ch211-223a10.1
XM_036981213.1 mRNA upstream 11847 59969512 ~ 59988857 (+) False si:ch211-223a10.1
XM_021606405.2 mRNA upstream 73566 59922675 ~ 59927138 (+) False lrrc18a
XM_021606368.2 mRNA upstream 206941 59786129 ~ 59793763 (+) True drgx
XM_021606624.2 mRNA downstream 164520 60183215 ~ 60218672 (+) True LOC110526033
XR_005053649.1 mRNA downstream 198426 60217121 ~ 60217262 (+) True LOC118966766
XM_036981447.1 mRNA downstream 210776 60229471 ~ 60264209 (+) False LOC110526041
XM_021606634.2 mRNA downstream 210777 60229472 ~ 60264209 (+) False LOC110526041
XM_036981456.1 mRNA downstream 212548 60231243 ~ 60264209 (+) True LOC110526041
TU73321 other upstream 58640 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 675575 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1300325 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1334798 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1413119 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 1296179 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1711070 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3256268 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4790894 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5897040 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile