RNA id: XR_005052269.1



Basic Information


Item Value
RNA id XR_005052269.1
length 334
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC118964951
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60016544 ~ 60024584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCTCCTTTACAGCTTTAATTGTCTGGAGCCCGGTGTTGTTGTGGCCAAGGAGCTTCCACTCCGATGGAACCTGGTTTCAGCTGCTGTGCAATGTTGACGTCCTTCCTCCCAGAGACTTATCCTCTTCTAAACGACCAGACTGGAGACGAAGACCTGAACACGAATCCTCTAACCTGAGAACATcaagagagagagCTCCTCCTTCAACTCCGTCACCAGGCTGAACAGACCCTcattgacccctgacctctgacctgtgaTGTCATCCCCAGGGTCACCCTCATTCCAGTCAGCGCTGCTCACACACAGCTCTAGAGGAGAGCTACTGTCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73992 lncRNA downstream 1566 60015137 ~ 60015430 (-) True G66817
TU73991 lncRNA downstream 3587 60013106 ~ 60013409 (-) True G66816
TU73963 lncRNA downstream 48202 59968588 ~ 59968794 (-) True G66788
TU73962 lncRNA downstream 48594 59967942 ~ 59968402 (-) True G66787
TU73960 lncRNA downstream 51922 59964807 ~ 59965074 (-) True G66785
TU73994 lncRNA upstream 1653 60026237 ~ 60026460 (-) True G66819
TU74060 lncRNA upstream 73220 60097804 ~ 60098997 (-) True G66850
TU74069 lncRNA upstream 102876 60127460 ~ 60127691 (-) True G66858
TU74085 lncRNA upstream 149078 60173662 ~ 60173861 (-) True G66874
TU74087 lncRNA upstream 151376 60175960 ~ 60176302 (-) True G66876
LOC110532486 mRNA downstream 372711 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 500264 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 500264 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 500346 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 509928 59438585 ~ 59507068 (-) True rassf4a
XM_036981267.1 mRNA upstream 2634 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 2634 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 4523 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 65406 60089990 ~ 60124142 (-) False LOC110525964
XM_021606512.2 mRNA upstream 65406 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 861851 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1231379 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2618508 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2954148 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 405623 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1657694 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1957147 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2386938 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3252624 63277208 ~ 63277752 (-) True G70013

Expression Profile