RNA id: XM_036981267.1


Basic Information

Item Value
RNA id XM_036981267.1
length 3433
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110525944
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60027218 ~ 60064906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTCTTGCAGTGCGCGCTCGGCCTGTCAATGCAGAGAGATTGTAGTGAATTCCGTGAGGTCATGTTTTGTAGCAGGACAACAGAATAGCCATCATTTATTATCCAAATAATTCAACTTAATTCATCTTCGAGGACTCGGACTTTTGTGGCTAATCCAGAACTGACATTCTGTATTTTGTTGACGGAGTACAGAGAGCCTAGTTTGGATGCCCAGAAAGTAGCTCCTCCAGGTTTCATCATGAATAAAAACaagcgaggaggagagagggagttcTATAGTTTAGATGTCGGAGATTCCACCTTCAAAGTTCTGAAGCGCTACCAGAATCTAAGGCCCATTGGCTCAGGAGCACAGGGAATCGTCTGTTCAGCGTATGACCACAACCTTGAGAGAAATGTGGCTATTAAGAAGTTGAGTCGGCCGTTCCAGAACCAGACGCACGCCAAGCGAGCGTACAGAGAACTGGTGTTAATGAAATGTGTCAATCACAAAAATATCATTGGCTTATTAAACGTATTCAGCCCACAAAAATCATTAGAAGAATTTGCAGATGTATACATTGTGATGGAGCTGATGGATGCCAACCTGTGCCAGGTGATTCAGATGGAGCTGGACCATGAGAGGTTGTCCTACCTGCTGTACCAGATGCTGTGTGGCATCAAACACCTCCACAATGCCGGCATCATACACAGGGATCTGAAGCCCAGTAACATTGTGGTGAAGTCAGACTGTACATTAAAGATCTTGGACTTTGGCTTGGCTCGAACAGCGGCTACAGGTTTACTGATGACCCCCTATGTAGTGACCAGATACTACAGAGCACCAGAGGTCATATTGGGGATGGGCTACCAGGCCAACGTGGACATATGGTCTGTGGGGTGTATTCTGGCAGAAATGGTCCGTCACAAAATCCTGTTCCCAGGAAGGGACTACATTGACCAGTGGAACAAAGTGATAGAGCAGCTCGGGACTCCGCCCCAGGAGTTCCTGATGAAGCTCAACCAATCAGTGAGGACGTATGTTGAGAACCGACCGCGCTACGCAGGATACAGCTTCGACAAACTCTTCCCGGATGTCCTCTTCCCTGCAGACTCAGAACACAACAAACTGAAAGCGAGCCAGGCCCGAGACCTGCTGTCTAAGATGTTGGTGATTGACTCGTCTAAGAGGATCTCGGTGGACGAGGCTCTGAAACACCCCTATATCAACGTGTGGTACGACCCAGCAGAAGTGGAGGCACCCCCTCCAAAGATCACAGACAAGCAGCTGGATGAGCGAGAGCATACGGTGGAGGAGTGGAAAGACCTGATCTGGAAGGAGGTGTATGAGTGGGACGAGTGGACCAAGCAGAATGGAGTGATCAGAGGACAACCTCCTCCTTTAGGTGCAGCAGTGATTGACAGCTCCCCTCAGCccgcctcatcctcctcctcggcCAATGACGTATCCTCCATGTCGACTGAGCCAAGTGACCCCACCATGACCTCTGACACGGACATCAGCCTGGACAGCCACACCTCCCTGGGAGCACTGGCCTGCTGCAGATAACACacgtacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacagacacagccctACACATCCTGTCATAGTATACATAGTTTGAGACACTTAAGGGTCCtttgttaaaaacatttttttttaatgtacagCTTCTTTTAATTTCTCTGTCTCCTATATTCTGTATTGCCGATTGTGTACATGCTGtaaattattatatttatttatttattttcttgtgTCAGCTTCTGTCCCTCCAAGCTGTGTACAGTATTTCTATGCTGTAAGTTGTAGTCTTTTGGATCTCACAGTGGATGGAACTTTTTCCCCCTTTTCTCTATTAGAAAGTGTTTCCTTACAAACACATATTTTATTTTCTAGTATTTAGTGGTCATCTCTATTTAAATGGATCCTAAAAAATATTTTGACACCCTGTTACTCTGCCTACCCGTAGCTGTAGTGTTCTGGAGTCATGGCTACACCTTTATTTTTTCTAGTAATGGAACATCTCTTTATTTATTATATGACTGTAATTGTAAAGTTTTTTTGGGGTGTTGGATCTGGAGATAGCTTTGTTATCAAATGTTAATGAGCAGACATGGGAGTATGGGAAGGCAATAAAATCACCTGGCCCAAATACTTTAGACACTTTCCCCTCTTTGTTGCTTGACTTCTTCAACCAGTTACAATTTGCTCCCTGTCCCTCCTGCTTGTCCCTCACCCTTCGACgtttgcagtagtagtagttctgGATAAGTAGAAACACCTGAACAGTTCTGCAAACATCAAAGGGTTGGGGCCAAGGGTAGCGGTAAGGGACCAATTTGGGACAAATTGGCTGCTTATGTTTTATTGTTGGGGCCAGGAGTCTTTCCTCAGGTTACATGACCAGGCAAAACCCCTAGCCCTAATTCATTCAATTTGATTTAAGTGCTCTTACAGTTGTCTGCGTTTTTTTTTAGcccctctctatctcgctctgcTGTTGAGGCACTCGAAGAGTGTTTTGTTAGCTTAGTACGCCtgagctcctctctctgtgccgtCTCTGTTAGAGGACTTGGTTTTCATTAACTACCTCGCCTATATGAGTTTCTGACTGACATAACAGTCCACAGCAAACGGTCTTAAAAAAACACGTGAAtaaagttttattttttatttatttatttggaaATGTACAATTATCAATGTTAGAAGACTGCTAGTATTGTACGTactcactgggcacagacgtcaattcaatgtctattccatgaTGTGGGATGACGTGGGAGACAATGTTGATTCGACCCATGTGTACTAtgtatatacatttatttttgttttattttcagTGTATGTGCAATACCTATGATTTGTAGACTATAGAGTAGGTAGTGAGTGGTTGATTTGTATGCTAGATGGATGTTCTCCAGGGGTTTCAAAAGGTTTGCCGCCAGCTATGTTTTCCTTTTTCTAGATGAAGACGTATTTGATGGCTCGATTCCAAACCGATCCCTCACCCCTCTTCTCAACGTTCAATCCCTATATGACCTGTGTATGTTTGGAACTGGGCCCCATCCCTGGCTGTGGTCAGGCCTATCACACACCAGAAACATGGCTGCGTTCAGGAGGGCTCAATACTTTGGAACGTTCAGTGGAATCTGTGGAATCCGTCTAGTAAGTTTCACCCTCCTGAGCGCAACCCAGGTTTCGTGGTGTTTTCCGCAAAGGCCAGTTGTATAAATTTTAGCCTTTTGATCTGGACAAGGCCTCACTACAGACTTAATGTACACACTGGAAAAAGTTAGACAATGTCAACCTGCAACTCCTGCAAATAAAGGGTTGAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73994 lncRNA downstream 758 60026237 ~ 60026460 (-) True G66819
TU73955 lncRNA downstream 5995 60017341 ~ 60021223 (-) True LOC118964951
TU73956 lncRNA downstream 10061 60016544 ~ 60017157 (-) False LOC118964951
TU73992 lncRNA downstream 11788 60015137 ~ 60015430 (-) True G66817
TU73991 lncRNA downstream 13809 60013106 ~ 60013409 (-) True G66816
TU74060 lncRNA upstream 32899 60097804 ~ 60098997 (-) True G66850
TU74069 lncRNA upstream 62555 60127460 ~ 60127691 (-) True G66858
TU74085 lncRNA upstream 108757 60173662 ~ 60173861 (-) True G66874
TU74087 lncRNA upstream 111055 60175960 ~ 60176302 (-) True G66876
TU74089 lncRNA upstream 112772 60177677 ~ 60177945 (-) True G66878
XR_005052269.1 mRNA downstream 2634 60016996 ~ 60024584 (-) False LOC118964951
LOC110532486 mRNA downstream 382933 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 510486 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 510486 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 510568 59511553 ~ 59516650 (-) False tmem72
XM_021606503.2 mRNA upstream 25085 60089990 ~ 60124142 (-) False LOC110525964
XM_021606512.2 mRNA upstream 25085 60089990 ~ 60124142 (-) False LOC110525964
XM_021606519.2 mRNA upstream 25085 60089990 ~ 60124142 (-) True LOC110525964
XM_036981396.1 mRNA upstream 65410 60130315 ~ 60148883 (-) False LOC110525977
XM_036981339.1 mRNA upstream 65410 60130315 ~ 60167367 (-) False LOC110525977
TU72370 other downstream 872073 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 1241601 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2628730 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2964370 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 365302 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1617373 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 1916826 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2346617 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3212303 63277208 ~ 63277752 (-) True G70013

Expression Profile